3300024973: Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_expt_300_biof (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300024973
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118793 | Gp0095077 | Ga0209959
• Sample Name: Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_expt_300_biof (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 137607266
• Sequencing Scaffolds: 16
• Novel Protein Genes: 20
• Associated Families: 11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Thiobacillaceae → Thiobacillus	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Thiobacillaceae → Thiobacillus → Thiobacillus thioparus	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	7
All Organisms → Viruses → Predicted Viral	1
Not Available	2
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta → Adineta ricciae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Wastewater Bioreactor Microbial Communities From Cape Town, South Africa
• Type: Engineered
• Taxonomy: Engineered → Bioremediation → Hydrocarbon → Unclassified → Unclassified → Wastewater Bioreactor → Wastewater Bioreactor Microbial Communities From Cape Town, South Africa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: South Africa: Cape Town
• Coordinates
  • Lat. (^o): -33.936637
  • Long. (^o): 18.478905
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025775	Metagenome	200	Y
F033506	Metagenome / Metatranscriptome	177	Y
F033870	Metagenome / Metatranscriptome	176	Y
F055860	Metagenome / Metatranscriptome	138	Y
F075082	Metagenome / Metatranscriptome	119	Y
F081545	Metagenome	114	Y
F087441	Metagenome	110	N
F092364	Metagenome	107	Y
F094111	Metagenome	106	Y
F095751	Metagenome	105	Y
F103563	Metagenome / Metatranscriptome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0209959_100011	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Thiobacillaceae → Thiobacillus	659158
Ga0209959_100036	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Thiobacillaceae → Thiobacillus → Thiobacillus thioparus	329946
Ga0209959_100058	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Thiobacillaceae → Thiobacillus → Thiobacillus thioparus	259641
Ga0209959_100451	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	30574
Ga0209959_102037	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	6094
Ga0209959_103499	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	3643
Ga0209959_106890	All Organisms → Viruses → Predicted Viral	2036
Ga0209959_107964	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	1806
Ga0209959_118729	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	919
Ga0209959_119714	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	872
Ga0209959_125471	Not Available	652
Ga0209959_132738	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	561
Ga0209959_134282	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta	549
Ga0209959_137226	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta → Adineta ricciae	528
Ga0209959_138482	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	520
Ga0209959_139227	Not Available	515

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0209959_100011	Ga0209959_10001192	F025775	MKQLLTFQSFPMVVVTGLIIWAWISILSVLIASFF
Ga0209959_100036	Ga0209959_100036115	F025775	MKQLLTFQGFPMVVVTALIVWAWISIFSVLIASFF
Ga0209959_100058	Ga0209959_100058106	F025775	MKQLLTFQGFPMVVVTGLIVWAWISIFSVLIGSFF
Ga0209959_100451	Ga0209959_10045112	F033870	MKVSMEAPQTPQHDLVAMTAALRGVLLQRVEHGIQSSGLTNYFFYLVAKRLTFAGPLTIPGLAEQLRLNPRDIEDSLHVMLERGMVTREDDAWRITDTGRRALTAANNSGEQVLDDIRNAIGAAACDHLVTGMRDALAALRKAA
Ga0209959_102037	Ga0209959_1020372	F094111	LTLSYNQPRFCLNTIWNSIATSFADQSFLGTDPHGIFVNSNNSIYIPNRQTGQIYIWQNENHLNPTKTIIYVDNGQYNGRVDKWIVENETWISVMNATSPCFGLFIDIYENLYCSMFYNHRVDKKWSNSIISIESTKWNNCCRIWISKCNNQT
Ga0209959_103499	Ga0209959_1034992	F087441	MEPLAVYGKSLIETNTNLSRSLSISILDEQGNEIPFETTSSNPIEFFIPRDPNLRIPPMILTNKTFHSLNLTTDLPISVHFEIKANFSYRFVYKFDRQTNFLNSIEVNNQNDFNFMLDNQQTVGHRLLIFGLEEENSNSSEYEYRVYSSGCYYLNKQNQWTSDGLRVGPKTNLSQTHCYSQFI
Ga0209959_106890	Ga0209959_1068901	F087441	MEPLAVYGRSLIESNTNLSRSLSISILDESGNEIPFETTSSSNPTEFFIPRDPNLQIPPMILTNKTFHSLNLTTDPPISIHFEIKANFSYRFVYKFDKQSILTNSIQVNQSYFTFMIDNQQTVGHRLLVFGLQQENQNNSEEYEYRVYSSGCYYLNKENEWKSDGLRVSPKTNLSQTHCYSTHLT
Ga0209959_107142	Ga0209959_1071421	F092364	MVMFVIGFINGICSFITFRNKELRKVGCVLYLLASSITSLLTITMFTVKFWFVVFIQLHSIISSSILQTDCAFIGPVLKLCLYLDGWLNACVAIERTVNVSKGITFDKKMSKRAARWIIPILFLIIMGTIIHEPISHELFEYPTQKYKPINNNLTMNKSMRNEIYSEYEIEHNVLCVIRYSRSVQTYNTITLFVHLVVPFLLNLCSALFIIFGTARQRSTTHNNQTLREHILKQINEHKQLLISPIILLILALPRLIISLVSGCVDPSNNPWLYLCGYFTSFIPPMLIFAVFVLPSELYWKTFKNSITKWRRHGCW
Ga0209959_107964	Ga0209959_1079644	F087441	SLIESNTNLSRSLSISILGQNGNEIPFETNSDSIEFFIPRDPNLRIPPMILTNKTFHSLNLTTDLPISIHFEIKANFSYRFVYKFDRQSSFTNSIEVNQSYFTFMLDNQQTVGHRLLIFGLEQENQNISEEYEYRVYSSGCYYLNKENQWKSDGLRVGPKTNLSQTHCYSIHLT
Ga0209959_110871	Ga0209959_1108711	F075082	MASSNSNKRRPRIQRIIQNFHLVWLDGNINENDDDCRHSIQKLKQVVNTVNTFVDVDECIDFINKIPEETAFMITSGAFGQTVVPAIHNKKQVNAIYIFCGNKDRHEKWAKEWPKVKGVFTDIKPICEALKQAAQDCDQNAVSISFAPTGDSTANKNTLECSFMYTQILKDILLTIHFDHDH
Ga0209959_113967	Ga0209959_1139671	F095751	MYQAYPLKQYFDLFNRHARRANITTVYINSEDEQVFNEFDQINRKTQNYYKLISIQTTKNVVYRTLTNMSREQRGKIVLEFLTDLYIEANADLHAGTLTSNWCRLVDEIRLVLGKKIPYYTPENKYLMDW
Ga0209959_118729	Ga0209959_1187291	F087441	MEPLAVYGRSLIETNTNLSRSLSISILDEKGNEIPFETNSDSIEFLIPRDPNLRIPPMILTNETFHSLNLTTDLPISIHFEIKANFSYRFVYKFDKQSIFTNSIEVNQSYFSFMIDNQQTVGHRTLIFGFEGENQEYEYRVYSSGCYYLNKENEWKSDGLRVGRKTNLSQTHCYLT
Ga0209959_119714	Ga0209959_1197142	F103563	MVAIDRVGHVYPSVHLQEMLNLAQNSAPLATPTEYTSTHVNDPVASVMNGEIGQKISPSQFGLANNPSLQFSTPGGGFVQVFGPLKTPGNDKFFHDPNPVVIQKKSKPITYVQKINLAYYKPPAPPAPGPVIIKEVGR
Ga0209959_119921	Ga0209959_1199211	F075082	MASSNVSRHKQSNQRIIQNFHLVWLDKNINEKRDDFRNTITKLRQVVNTVNTFVDADKCIDFINNIHEETAFMIISGAFGQTTVPIIHSKKQISDIYIFCGNKDWHTKWAKEWSKIKGVFTHIQPICEALKQAAHACDHNAVSISFATTRDTATSVSNKNA
Ga0209959_125471	Ga0209959_1254711	F033506	LITVSVAAILAIFSGFARSRTDATNNLARLAGIVAVVLLFATGVLVAVALYTFVGAQYGTGYSFTAMAIAQFLSFLAALLVAHWMVKFNDK
Ga0209959_132738	Ga0209959_1327381	F055860	KRFDFCSGILVDMCWMASLSVFVILTIHSVYLYDPIKGSGPAKVDAVQPLDRSHVLASISIIDHDVYINYHKGVHLDQYRVSTTSQWTLEKRFSKSDCCEAKDIGIRDVRCDAQSICLSIMQQGDLKWRLDIMSRDMKRIRRGTPMDAGENQHKFFSMLISLHDQRWLFVNWYTNKLWLVDQEGKPG
Ga0209959_134282	Ga0209959_1342822	F087441	MEPLAVYGRSLIETNTNLSRSLSISILDEKGNEIPFETFSNPIEFFIPRDPNLRIPPMILTNETFHSLNLTTDLPISIHFEIKANFPYRFVYKFDKQSSFTNSIEVNQSYFTFMLDNQQTVGHRTLIFGFEGENQEYEYRVYSSGCYYLNKENEW
Ga0209959_137226	Ga0209959_1372261	F094111	YQQQYLTSATFSFNQPRFRINATWNLIATTFANQSFVGTFPHGIFVNSNNSIYIANRQTGEIHIWLNENHLNPTKTISGNLSNPFSLFVTTNGDIYVDNGNNRRVDKWIRENERWISVMNASSYCDGLFIDIYENLYCSMYHNHRVDKKWSNDTTTIVAGTGVQGSQSDLLNYPC
Ga0209959_138482	Ga0209959_1384821	F081545	MDHQQLRSIIIKLETRLSDDDRERLHFYLGNDVPRKIRDDASLRGTLRLMDSLFDQDKINEQDFTFLIRAFEQIQCIDAVNLLKG
Ga0209959_139227	Ga0209959_1392271	F094111	QRNLIVSVRKIVQKSFHFDFVVLTLSYNQPRFCFNTIWNSNATTFANLSFVGPLPYGIFVNSNNSIYILNQQTGQILIWLNENDLNPTKTVSGNLSGPLSLFVTTNDDIYVDNGKNGRVDKWIRENETWISVMNVTSKCYGLFIDIYENLYCSMQDNHRVDKKWSNGTTTI