3300024041: Peat soil microbial communities from Stordalen Mire, Sweden - 717 E3 1-5

Overview

Basic Information

• IMG/M Taxon OID: 3300024041
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0131983 | Gp0256467 | Ga0224539
• Sample Name: Peat soil microbial communities from Stordalen Mire, Sweden - 717 E3 1-5
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 41611474
• Sequencing Scaffolds: 8
• Novel Protein Genes: 11
• Associated Families: 11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	4
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Acidobacteria	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Peatland Microbial Communities From Stordalen Mire, Sweden
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → peatland → peat soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3533
  • Long. (^o): 19.0466
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000634	Metagenome / Metatranscriptome	971	Y
F000926	Metagenome / Metatranscriptome	832	Y
F002283	Metagenome	574	Y
F002347	Metagenome / Metatranscriptome	568	Y
F009281	Metagenome / Metatranscriptome	320	Y
F018300	Metagenome	235	Y
F031999	Metagenome / Metatranscriptome	181	Y
F036661	Metagenome	169	Y
F040382	Metagenome / Metatranscriptome	162	Y
F046737	Metagenome	151	Y
F080602	Metagenome / Metatranscriptome	115	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0224539_1000291	Not Available	913
Ga0224539_1000515	All Organisms → cellular organisms → Bacteria	802
Ga0224539_1001330	All Organisms → cellular organisms → Bacteria → Acidobacteria	646
Ga0224539_1001829	Not Available	603
Ga0224539_1003357	Not Available	530
Ga0224539_1003912	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	512
Ga0224539_1003949	Not Available	511
Ga0224539_1004006	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	509

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0224539_1000291	Ga0224539_10002912	F046737	RILTSIKKVLFFIALATVLAACDTQQGMMHGGGSTMNMGNWNWVGILIGLIIGFLIGYLVASRRR
Ga0224539_1000515	Ga0224539_10005151	F000926	LHGNTVARLEVLVRTAVFKSANALVGWLLQQAADRIDAQYQPKARQTRKSRETIGVQGIFGRFQLQRDYYYHEGKDQGHYPVDAALGLEVGYTPALAKLICLEGADEPTYQKAERHLEQTGGICVSSRQ
Ga0224539_1000515	Ga0224539_10005152	F002347	MNQSTKTHLLQQIAGIPAMELGKLSRYTFKERSNASGPYHKLQRWQDGKNHTRYVSADELPAVQTALAGYAQFRQLTEQYADLVIEETRQHIAGSKKNQFRPESSSPRKKKSSN
Ga0224539_1001330	Ga0224539_10013301	F000634	LPATSSKATIKILYGEDDEQVLAAQAAEMKKAGHHVTPAIGRQGVMEVLRRDAFDLVILGSTLSKDDRHHLPYMVKKSHEGTKVLVMAAGHHNEVDATIDANTSMQFVLEKIARLLAEQSVSA
Ga0224539_1001676	Ga0224539_10016761	F031999	MTNTKFVVKVNLTGARSVEYVQRVDRTPILTTTNRK
Ga0224539_1001829	Ga0224539_10018291	F002283	MGILINIQVLPPNQSLKLTEPAVDDFARAKQPVTIGQDLSRADWIPSLRHFVAAA
Ga0224539_1001829	Ga0224539_10018292	F018300	KLTEIAVDDFLRAKQPVTIGLDLARADWIPSLRHFVAAA
Ga0224539_1003357	Ga0224539_10033571	F036661	GGGELSTMSALDTEYLTAPALAERIALVRAQLAPIRSRTALLDSYRRESLWRLAGPAQTAGSATEVLDQAYALRWLELEPDKSIAEPQFDPSFEQGDG
Ga0224539_1003912	Ga0224539_10039122	F040382	MNNSSLIRNRSIRVLAFVLASSLAGFASVIGSFDRSFQVNG
Ga0224539_1003949	Ga0224539_10039491	F009281	ASGVPKSYGKLVTAFADSIGTGLVFEDAEGVIRFVSITGMKEGELARYQTTPTRGGIPKSYGHLVSAVVNHGTTGLIFEDASGVIRFVTLTGETERELPRN
Ga0224539_1004006	Ga0224539_10040061	F080602	ISAVQRPFGILNALSVGALMVVLIIATYTGLFLAFIAIKL