3300023717: Human gut microbial communities from healthy child feces in Northridge, California, USA - CDI_128B

Overview

Basic Information

• IMG/M Taxon OID: 3300023717
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133482 | Gp0296381 | Ga0257029
• Sample Name: Human gut microbial communities from healthy child feces in Northridge, California, USA - CDI_128B
• Sequencing Status: Permanent Draft
• Sequencing Center: University of California, Irvine
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 89158579
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Child Gut Microbiome
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Gut → Child Gut Microbiome

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: Northridge, California
• Coordinates
  • Lat. (^o): 34.2381
  • Long. (^o): -118.5301
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051936	Metagenome	143	N
F062845	Metagenome	130	N
F078693	Metagenome	116	N
F097493	Metagenome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0257029_10087	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	131351
Ga0257029_10140	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	100106
Ga0257029_10368	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	44395
Ga0257029_12265	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	6521

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0257029_10087	Ga0257029_1008730	F062845	MKKTPFILHEKFRSDNNEQRKERFQKEFERYIIDGLLNAIPPSSCA
Ga0257029_10140	Ga0257029_1014071	F097493	MYKFHMKNGTAYFYEHGVEIDGTVYGIHTDRDILRIKRRIVNDKFAETDDNFDMDTEIAKIQHTDITFEQPTSEQLSQIQSKTFDSMSDMKQYVQSVMNGELTQDEINAMLLLKIAEMEVAITNEQTTN
Ga0257029_10368	Ga0257029_1036845	F078693	MVLALVRGAERFYVKWNCSLLMSKENQKTTSDFDALDPRERGCSPLSDPKGVVETEKS
Ga0257029_12265	Ga0257029_122651	F051936	TGQVLFFPLALRGKAFGFSVLQEHAVMTPVISIFFVMLIIRNLSIHISIKK