Overview
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300023690 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0128948 | Gp0290730 | Ga0247512 |
| Sample Name | Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRI1 (Metagenome Metatranscriptome) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 34967668 |
| Sequencing Scaffolds | 29 |
| Novel Protein Genes | 30 |
| Associated Families | 27 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → Narnavirus → unclassified Narnavirus → Plasmopara viticola lesion associated narnavirus 22 | 1 |
| All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Alismatales → Araceae → Pothoideae → Potheae → Anthurium → Anthurium amnicola | 1 |
| All Organisms → Viruses → Riboviria → Orthornavirae → Kitrinoviricota → Alsuviricetes → Martellivirales → Togaviridae → Alphavirus → unclassified Alphavirus → Fusarium sacchari alphavirus-like virus 1 | 1 |
| Not Available | 24 |
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila | 1 |
| All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea sitchensis | 1 |
Ecosystem and Geography
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Czech Republic: South Bohemian Region | |||||||
| Coordinates | Lat. (o) | 49.043 | Long. (o) | 13.6183 | Alt. (m) | N/A | Depth (m) | N/A |
| Location on Map | ||||||||
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