Sample 3300023688

Basic Information
IMG/M Taxon OID	3300023688 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0128948 \| Gp0290740 \| Ga0247522
Sample Name	Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRE1 (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRE1 (Metagenome Metatranscriptome)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	29789940
Sequencing Scaffolds	23
Novel Protein Genes	25
Associated Families	23

Dataset Contents

Total Genome Size

29789940

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → Narnavirus → unclassified Narnavirus → Plasmopara viticola lesion associated narnavirus 22	2
Not Available	19
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea sitchensis	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → Narnavirus → unclassified Narnavirus → Plasmopara viticola lesion associated narnavirus 22

Not Available

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila

All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea sitchensis

Ecosystem Assignment (GOLD)
Name	Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Ecosystem Assignment (GOLD)

Name

Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Type

Environmental

Taxonomy

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

Unclassified

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Czech Republic: South Bohemian Region
Coordinates	Lat. (^o)	49.043	Long. (^o)	13.6183	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

Zoom:	Powered by OpenStreetMap^©

Location Information

Location

Czech Republic: South Bohemian Region

Coordinates

Lat. (^o)

49.043

Long. (^o)

13.6183

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000396	Metagenome / Metatranscriptome	1185	Y
F001024	Metagenome / Metatranscriptome	803	Y
F003427	Metagenome / Metatranscriptome	487	Y
F004183	Metagenome / Metatranscriptome	449	Y
F004473	Metagenome / Metatranscriptome	436	Y
F006338	Metagenome / Metatranscriptome	375	Y
F009043	Metagenome / Metatranscriptome	324	Y
F009688	Metagenome / Metatranscriptome	314	Y
F010404	Metagenome / Metatranscriptome	304	Y
F018933	Metagenome / Metatranscriptome	232	N
F024793	Metagenome / Metatranscriptome	204	Y
F030305	Metagenome / Metatranscriptome	185	N
F030619	Metagenome / Metatranscriptome	184	Y
F038944	Metagenome / Metatranscriptome	164	Y
F060406	Metagenome / Metatranscriptome	133	N
F065397	Metagenome / Metatranscriptome	127	Y
F067447	Metagenome / Metatranscriptome	125	N
F068321	Metagenome / Metatranscriptome	124	N
F071421	Metagenome / Metatranscriptome	122	N
F089618	Metagenome / Metatranscriptome	108	N
F089654	Metagenome / Metatranscriptome	108	Y
F098775	Metagenome / Metatranscriptome	103	Y
F104140	Metagenome / Metatranscriptome	100	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0247522_101731	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → Narnavirus → unclassified Narnavirus → Plasmopara viticola lesion associated narnavirus 22	2097	Open in IMG/M
Ga0247522_102123	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → Narnavirus → unclassified Narnavirus → Plasmopara viticola lesion associated narnavirus 22	1948	Open in IMG/M
Ga0247522_109668	Not Available	885	Open in IMG/M
Ga0247522_109679	Not Available	884	Open in IMG/M
Ga0247522_110847	Not Available	814	Open in IMG/M
Ga0247522_110905	Not Available	811	Open in IMG/M
Ga0247522_110910	Not Available	810	Open in IMG/M
Ga0247522_110959	Not Available	807	Open in IMG/M
Ga0247522_111431	Not Available	782	Open in IMG/M
Ga0247522_111670	Not Available	769	Open in IMG/M
Ga0247522_111841	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila	760	Open in IMG/M
Ga0247522_113594	Not Available	677	Open in IMG/M
Ga0247522_114479	Not Available	642	Open in IMG/M
Ga0247522_115766	Not Available	602	Open in IMG/M
Ga0247522_115801	Not Available	601	Open in IMG/M
Ga0247522_116306	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea sitchensis	586	Open in IMG/M
Ga0247522_116443	Not Available	582	Open in IMG/M
Ga0247522_116822	Not Available	572	Open in IMG/M
Ga0247522_117799	Not Available	546	Open in IMG/M
Ga0247522_118165	Not Available	538	Open in IMG/M
Ga0247522_118392	Not Available	532	Open in IMG/M
Ga0247522_119059	Not Available	517	Open in IMG/M
Ga0247522_119255	Not Available	513	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0247522_101731	Ga0247522_1017311	F030619	MSPLQQVWTACWSGLVLSGWDSMRVAWFLHQWTCRSAPRGVAYQVDCMKKLCHNIRGASLHSKRWKVQPCGIRKDVVDCLCRLAVRSPENGFAFTRLSRSLPEPPAREAIRHLQSAAVMASAPFPTSDAALASLRSFVSLSKRARRNPRAPRRLPSSNSSCLEWPATRGGIDGYLEHLGHGLEERGATRAEFSQFAGDSLGAFCLSRARVVLRPCSGVSEDMRESYRCAGLLALRAEGKPFAMKATALRAPGYKVRVVGVPDARTFVEGSWIRGSSRLLPPGHWTIDSESREVPNGLHYRRGHTFRSLDLSKATDGLSHAAVEVVIEALARRGAIRPADHLMARRSLGLVGNTTWSFPDPIGEVVFSRGSPMGTPLSFIVLSWVSAWAVGKFSRSLTHGDDAVGRHRIGSDALGVYASRVASVGAQLNKGKTFRADHSWTACEILALPRENCEDGMTLFVPPSIPPPGLRAPVEADPRLENLWLRRMERVIKSRFPWIKCDPRLHLPVEVGGLGYTGRGLAVGRGLRSRLGALVSRGPSAEIGAALIGKKPFREVGLYPHPLVRVPKPKAYWKAVRAVNQELAPLGADLVPVPLESFESFKCQLVESELRLVEGDRFRRKRVAGRPDSNKRSAVFRRLSVKPAKPLSRFGGLAGLKRWALTCESVRVMVDQDI
Ga0247522_102123	Ga0247522_1021231	F030619	CHNVRGSALHSKRWKNVPCNIRKNVVDTLCHLAVRQPENGFAFTRLSRSLPEPPQRECVRHLQAAKLMASAEFPTSVAALDSLRSFVALTPGVSGNGVLRHPRRLPSSSSSCLEWPATRGGIDGYLEHLGHMCEEAGATQSSFHAYAGDSLGGFCLQKASVVLRPCAGVAADLRESYRCAGLLYLRSQGKPFGMKATALRTPGYKVRVVGVPDCLTFVEGSWVRSSLRWLAPGHWRIDGESRKIPGGLHYRAGRRFASLDLSKATDGLSHPAVRVVIEGLASRGLIRSADLAMSMRSLGLERGATWSFPDLGDKIGEGSFLRGSPMGTPLSFVVLSWVNAWATSTFSRALTHGDDAVGRYTPGSLELDLYASRVASVGAALNREKTFKADHAWTACEIFALPRSHGEDKMTLFYPPSIPPPALRAPVEADQRLENLWLRRMERVMKSRFPWIVKDPRLHLPVQVGGLGYTGRGLAVGVSVRRRLGALVSRGPSAVIAADLIGKKPFREVGLYPRPLCRVVRPGSYWKAVRVTEQWFQAGGDTHVPLESLLSFKSCLIEDEVRLLEGDKFKRKRVAGRPDRTRAGAVFRRLGVAPCRPLTRRWGCSALIRWASLSRESEVTVPEDIASEIRERIPDPT
Ga0247522_109540	Ga0247522_1095401	F104140	MTNSMKSENKLDGASNFRAWKTRIDLILAKNKVLDIVKGKIVKPEFKEGEEKEP
Ga0247522_109668	Ga0247522_1096681	F060406	MIKWISEVDVFGELSSTTGCRVLRLPQRPTSRFRLRSRPLAALAPNLRLASPASHSSSTGGRLRRLGSTFCRSARTVANLRLSPALRASVRPLADLPTFVGVLPQARPRTNFRFAPDFDPSTRLVSNFRFAPVVVATSACAFCCCGLWLAPVPPVCQTGGELPTRIGCSSSGFTGFDSLGLRLVLLPPAGFLMHP
Ga0247522_109679	Ga0247522_1096791	F030305	LQFIGSCIVPFGFLVPVPSFLFPALSDLARRCSSGRPVPRVSDRTGDEASSCPDSSVFSAVPADGSSSRPDSRILQLGYPQIARLPRLSTSCLAVDERPGCPDRSIIWLYRRRRFRVAPNLTSFGGTVSNSPSRPGSSLLQPLPLMVLRVAPGAPSSGFAGGDSSGCPEALIPRLCRLVALRVSPNLPPSDICRFRSSGLPQIGFLGGSMMNPRFARTLHPRSIQLTFLQVAPKLPLPAAPRMNLQTHSGFAFLPTLRCSLNLYPLFACRRTGLLRTTINQFPIACRAGLQSVS
Ga0247522_110847	Ga0247522_1108471	F067447	PSRVAGPNPPHFAPRRNYFLLDTYTKRYTRIAPWLTLSACAGRGLLRAQHFSALPRSRIAPRSTLGFQRQARIAPYPALPALMLHPDCSVFSTCRSVPCTDCSALVPSRSAPATNYFVLDTWPFRPAPGCLRALDVLPCAVYRSLGVQHLALAPVTNYFVLDTWPSVQRPDASVLSTSRPALPADCSALTALRCASYGLLHAWHLALAPVKDYSSLDT
Ga0247522_110905	Ga0247522_1109052	F018933	VPSCWSQPSLLRRSRITPRSTLDSLYRPRIAPRSVLIDRCCPPIARRSTLNAPRRSQIAPRSTLCARAGHGLLHVQHLESSPRVQIAPYSTLCVPRRSQIAPRSTLPARYRSRIAPLSAIDAPCRSTDISVRLHFAPCAVHGLLRAQHVKLRTAHRLLCVRRLHFVPITDCSAFLTPCLVLLADCSVLNT
Ga0247522_110910	Ga0247522_1109102	F098775	VKTRIRIRRRVLAWFVSRWRNHQLKQAEKPHSKFSARKTLDGPATRPKTPLAVENSVGKLAAPRKRCAPNSQRGKERVAN
Ga0247522_110959	Ga0247522_1109591	F009688	MLSFPDRHWAHPFGAAGFPTPFSTASGVFGLVAGPSNALRPWILSEAFQLASAGGCATGLPTRSRHACNFLVRVLTTGSGSATAFGGAFARNHGSRLFTLKLPLFHSPAVSFLISPALGSFSRGLPSRRVLPDAITLFVRLSAYLILASSTFYF
Ga0247522_111431	Ga0247522_1114311	F006338	LDGPATRPKTPLAVENGVGKPAAPKGRQMPVRERELGELPS
Ga0247522_111670	Ga0247522_1116701	F089618	PAANLQLSLPLLPLAAPVSNLRLASAALPPARPRANPPARIGVFSPGSTGGKHPARTVCYALPIDWLLTFQLALASGLQLGLRLLPTHIWCRPSARQVLRLPVLTGFRRNHRLAPVAAAAPTRAGCCPLLPHRPRTSDSHRLLFRRLCRSQLTQLALCAPTSGWAFDAPLASTEPCIAS
Ga0247522_111841	Ga0247522_1118411	F038944	MRSKTSHAAKSGVGEHKARESESAQCVPMGKSAWRAPTP
Ga0247522_112466	Ga0247522_1124661	F104140	MKSENKLDGAFNFRAWKTRIDLILAKNKVLDIAKGKIVKPEFEEGKEKEPQNVAAMEKFKDVDIN
Ga0247522_113594	Ga0247522_1135941	F001024	MRPKTPLAVENGVGKLAAKVRQMSARERESGDLPS
Ga0247522_114479	Ga0247522_1144791	F000396	VPSDPISQLNSPPACNGTELCPQDCRAPSLQLPAAFFRTLRINAYGLTCQLSWLEPVSRSGLSLSRNDCLSPGHHFEVEAPDLLLQHPTVSSSCPFRFRFPSALQFALARARSIPKSRCLTPARHSRPFLGSPLPFGAFRALKDQSVQPDSRLGSSPSERSRLPITPRHRIHFLVGLDTG
Ga0247522_115766	Ga0247522_1157661	F089654	GRSLCDRMVRMTRVRGTIQRPVCMRTFALRPDGSDDRQSLAIATFQPATGHSDQRALNELNILPEPETRYGLSLAHNDAYATIARSMFLACTFVSLSKTCANPFDTGLFRSVRFRGRSGAMSLPDTRFPRRSPTLPIYPRSPLPFRSSMKTLRIEVFNRFPMREARLARHPIAVSSPPLPLSIRLRINASNSLRPARLSF
Ga0247522_115801	Ga0247522_1158011	F071421	TEAAQQAIQLPPLSFPRDGPPQFHSSLTATMVCGMCLSGGGNLSPITPKSGYRFGPTPRNLAKVVAIGQPPTDPIAARWENQRDFS
Ga0247522_116306	Ga0247522_1163061	F065397	VQVRVFVSRLYSPDKLTLVMAILMTKATTDMRWTEIAPPRRVFMGRWRPLEKTLRPIAEERSLSNGELMDGLRPTFPAVSGFKAEDDNEIFASAEC
Ga0247522_116443	Ga0247522_1164431	F009043	VPSDLISQPNSPPACTALSFAIRVARCCPFRSPPPSFESSGSMRPGSPAGFPAWNRYLEAAFHSPKTTVRLRTAISRSKFPTYSFDTLPNVHPARSVSDSPTRSGSPRYAQDPHQKPVARLPSGSPNRSSDLHSPLGPFGPFRIKAFNPIPGQEAHLPNSFDCLSLPGSDSILLVPMPDHCSRLASCSAARCST
Ga0247522_116822	Ga0247522_1168221	F010404	MQPFTLLQRRSALRQIPAAGSTLLAYIFAAALEFQLARSASRSRPRLAFFRLTGLDHCESPVANFLS
Ga0247522_117799	Ga0247522_1177991	F004183	MERLRGANEDRAIPEGGPNGCEARRGVDPKGAKTPEGERKQAAQPVKQAGKECNGLEAWMQPEAGANQRLAAEPKSRTGRNTGKRVSEVAGQDL
Ga0247522_118165	Ga0247522_1181651	F004473	VVKPVERFDPEGWKQPKGEWRPDGIMRAPEIGADNGSKVMNSPGIGFETEPSGGAFGRTGSQRNTGVETKGQGRSVDLVMVAKASLRASERPSRVSGSGRMQVLKPRFPH
Ga0247522_118392	Ga0247522_1183921	F024793	VNSASPELSLWFQRSRINQPDPAFPRSPGIIQKPSNLNLTF
Ga0247522_119059	Ga0247522_1190591	F003427	VADPELTVKTRIRSHKRVFTWFASRRPQTPAEASLEASLEIQRPQGAGRPCYEAETTPLAVENGVGKLAAFVRQMPAWERECGELPSP
Ga0247522_119255	Ga0247522_1192551	F068321	VSERLHSIHWFRTDSLGNLLPTWARLGPLSVNEQGAALSHRRFDRGSFRCDRAPNGVAWRFPDWTAVGFAFPSPFLGSRSLWMSVTRILVTCWARFDHDRGSLSPRLGEPLAAILTRIASGVFVADDFRVALSLAADSRRARYPLLRTDFAQKVGLRIRSLFLFRRSLSC

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300023688: Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRE1 (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences