Sample 3300023680

Basic Information
IMG/M Taxon OID	3300023680 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0128948 \| Gp0290746 \| Ga0247528
Sample Name	Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRA2 (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRA2 (Metagenome Metatranscriptome)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	20943922
Sequencing Scaffolds	22
Novel Protein Genes	22
Associated Families	21

Dataset Contents

Total Genome Size

20943922

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → Narnavirus → unclassified Narnavirus → Plasmopara viticola lesion associated narnavirus 22	1
Not Available	19
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea sitchensis	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → Narnavirus → unclassified Narnavirus → Plasmopara viticola lesion associated narnavirus 22

Not Available

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila

All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea sitchensis

Ecosystem Assignment (GOLD)
Name	Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Ecosystem Assignment (GOLD)

Name

Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Type

Environmental

Taxonomy

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

Unclassified

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Czech Republic: South Bohemian Region
Coordinates	Lat. (^o)	49.044	Long. (^o)	13.617	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

Czech Republic: South Bohemian Region

Coordinates

Lat. (^o)

49.044

Long. (^o)

13.617

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F001418	Metagenome / Metatranscriptome	698	Y
F003383	Metagenome / Metatranscriptome	490	Y
F004183	Metagenome / Metatranscriptome	449	Y
F006591	Metagenome / Metatranscriptome	369	Y
F007739	Metagenome / Metatranscriptome	345	Y
F009688	Metagenome / Metatranscriptome	314	Y
F012875	Metagenome / Metatranscriptome	276	Y
F014631	Metagenome / Metatranscriptome	261	Y
F016972	Metagenome / Metatranscriptome	243	Y
F018868	Metagenome / Metatranscriptome	232	Y
F018933	Metagenome / Metatranscriptome	232	N
F023797	Metagenome / Metatranscriptome	208	Y
F030305	Metagenome / Metatranscriptome	185	N
F030619	Metagenome / Metatranscriptome	184	Y
F044924	Metagenome / Metatranscriptome	153	Y
F058585	Metagenome / Metatranscriptome	134	N
F060406	Metagenome / Metatranscriptome	133	N
F065397	Metagenome / Metatranscriptome	127	Y
F067447	Metagenome / Metatranscriptome	125	N
F080063	Metagenome / Metatranscriptome	115	N
F089697	Metagenome / Metatranscriptome	108	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0247528_100810	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → Narnavirus → unclassified Narnavirus → Plasmopara viticola lesion associated narnavirus 22	2216	Open in IMG/M
Ga0247528_106209	Not Available	950	Open in IMG/M
Ga0247528_106538	Not Available	918	Open in IMG/M
Ga0247528_106954	Not Available	881	Open in IMG/M
Ga0247528_107870	Not Available	809	Open in IMG/M
Ga0247528_107898	Not Available	807	Open in IMG/M
Ga0247528_107937	Not Available	805	Open in IMG/M
Ga0247528_108011	Not Available	801	Open in IMG/M
Ga0247528_108524	Not Available	764	Open in IMG/M
Ga0247528_108955	Not Available	735	Open in IMG/M
Ga0247528_108978	Not Available	733	Open in IMG/M
Ga0247528_109079	Not Available	728	Open in IMG/M
Ga0247528_110132	Not Available	668	Open in IMG/M
Ga0247528_110172	Not Available	667	Open in IMG/M
Ga0247528_111068	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila	624	Open in IMG/M
Ga0247528_112332	Not Available	572	Open in IMG/M
Ga0247528_112445	Not Available	568	Open in IMG/M
Ga0247528_112695	Not Available	560	Open in IMG/M
Ga0247528_112909	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea sitchensis	553	Open in IMG/M
Ga0247528_113803	Not Available	525	Open in IMG/M
Ga0247528_113833	Not Available	524	Open in IMG/M
Ga0247528_114315	Not Available	511	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0247528_100810	Ga0247528_1008101	F030619	LERNTYKRLTLLVKSLPTEQSGTPSRKGARAHRHRGGDMSPLQQVWTTCWSGLVLSGWDSLRVAWHLHSWVVKTVPSRGMAFTIKELKVLCHNVRGSALHSKRWKNVPCNIRKDVVDTFCRLAVRRPEDGFAFTRLSRSLPEPPVRECVRHLQAARLMASTEFPTSAAALGSLRSFVALTPGVSGNGVLRHPRRLPSSSSSCLEWPATRGGIDGYLEHLGHMCEEAGATQSSFHAYAGDSLGAFCLRKASVVLRPCAGVAADLRESYRCAGLLYLRSQGKPFGMKATALRAPGYKVRVVGVPDCLTFVEGSWTRSSLRWLAPGHWRIDGESRKVPGGMHYRAGRRFASLDLSKATDGLSHAAVRVVIEGLAARGLIRPADLTMSLRSLGLERGATWSFPDLGDEIGEGSFLRGSPMGTPLSFVVLSWVNAWATSAFGRAITHGDDAVGRYRPGSLELDLYASRVSSVGASLNREKTFKADHSWTACEIFALPREWNEDGISLFYPPSIPPPALRAPVEADQRLENLWLRRMERVMKSRFPWIVKDPRLHLPVQVGGLGYTGRGLAVGVSVRRRLGALVSRGPSAVIAADLIGKKPFREVGLYPRPLCRVVRPGSYWKAVRATEQWFQAGGDTHVPLESLLSFKSCLIEDEVRLLEGDKFKRKRVAGRPDRTRKGAVFRRLGVASCRPLTRRWGCSALIRWALLSRESRVTVPEDIASEIRERIPDPT
Ga0247528_106209	Ga0247528_1062091	F003383	FSSMDQCIVSFCLSMRLQVAPLPQSSRSARVASPGCPFPAPFLLSRRPNPRVAPRFRAFGCAGDGSLELPRASMPLALPVSASFPSCPGAPAFSCRACDEGLGSPLVLHLRLYRRSVIELPRCSHHSAVPTYRSSGCPKFQPFGIADDSLSESPRTSNPPAPIDGYPSYPGSRTTRFALVESPGCPGHFPLGYDD
Ga0247528_106538	Ga0247528_1065382	F067447	VAGPNPPHFAPRKNYFLLDTYTKRYTRIAPWLTLSACAGRGLLRAQHFSALPRSRIAPRSTLGFQRLTRIAPCPALPALMLNPDCSVFSTCRSVPCTDCSALVPSRSAPATNYFVFDTWPFRPAPGCLRALDVLPCAVYRSLGVQHLALAPVTNYFVLDAWPSVQRPDASVLSTSRPALPADCSALTALRCASYGLLHAWHLALAPVKDYSSLDT
Ga0247528_106954	Ga0247528_1069541	F030305	PLQFIGSCIVPFGFLVPVPSFLFPALSDLARRCGSGRPVPRVSDRTGDEASSCPDSSVFSAVPADGSSSRPDSRILQLGYPQIARLPRLSTSCLAVDERPGCPDRSIIWLYRRRRSRVAPNLTSFGGTVSNSPSRPGSSLLQPLPLMVLRVAPGAPSSGFAGGDSSGCPEALIPRLCRLVALRVSPNLPPSDICRFRSSGLPQIGFLGGSMMNPRFARTLHPRSIQLTSLQVAPKLPLPAAPRMNLQTHSGFAFLPTLRCSLNLYPLFACRRTGLLRTTINQFPIACRAGLQS
Ga0247528_107870	Ga0247528_1078701	F058585	HSQYSRCCVLRLPQWPPSSFRWRCYLWLRWLSELRLASAPCTPARPVANLPARIGFVSFGSTGCKPPTCVDCSALPLVLRRSIWLAPDDPGLIGLAPDNPGSTRLAPHGPFLRLGRQPTSDSHRCRPLARLAASSGLRLMLPLPLGWLRFQFALAASPSALTVREPLGLRLVAPSPAEPVMHSLFQLNLASPAKPSMSILYPLALASSGIFQLNNFRLGSAFALLVRPAIPLRLAPQVSPSVRVYGHRSGSHRLFAP
Ga0247528_107898	Ga0247528_1078981	F018933	SRVAGLSLCCLRRSRITPRSTLDSLYRPRIAPRSVLIDRCCPPIARRSTLNAPRRSQIAPRSTLCARAGHGLLRVQHLESSPRVQIAPYSTLCVPRRSQIAPRSTLPAPYRLRIAPLSAIDAPCRSTDISVRLHFAPCAVHGLLRAQHVKLRTAHRLLCVRRLHFVQITDCSAFLTPCLVLLADCSVLNT
Ga0247528_107937	Ga0247528_1079371	F089697	STVGAASSGYPSGRPPAFAGAATIGCAGFQNSDLRRRPALQLDRWPTFRLGSASCPSARPAANLRLASNVPLFRSSFGDPSGLRLTILVSPGLRPTILVPPGLRRMALPPARPTTYLRFASMPSFGSAGGFIRLAPSAAPASRLAPPPVCTGCLTLRLYRP
Ga0247528_108011	Ga0247528_1080111	F060406	VNSIVQPAVASSGSTQRPTSRFRLRSRPLAALAPNLRLASPASHSSSTGGRLRRLGSTFCRSARTVANLRLSPALRASVRPLADLPTFVGVLPQARPRTNFRFAPDFDPSTRLVSNFRFAPVVVATSACAFCCCGLWLAPVPPVCQTGGEPPTRIGCPSSGFTGFDSLGLRLVLLPPAGLLMHP
Ga0247528_108524	Ga0247528_1085241	F006591	LATRSFPFAGPWALAPSQVGGRLLDASSRGNAELSVSWQDRRPDCSRRLLGEAFQHGSPIPCRGSAPHMVVRLLRHSLVTAVLQVGPRELPPERWPEGTGLASYPSIDI
Ga0247528_108955	Ga0247528_1089551	F080063	VALGQRTVKSGGRPRAKGGDAEPQSQTCLHLVRKPASANASPSELRGLTRRFSRRKALDGPAMRPQFRLPWRMASGSWQPRKGAPNV
Ga0247528_108978	Ga0247528_1089781	F023797	MLGKPLMLSPFSIRRFGAARVDTIPLLDRTSHRPAVRRMSLPMSLESSLPQLAPQAIFRSLSNLSSSCVAGNV
Ga0247528_109079	Ga0247528_1090791	F009688	FGAAGFPTPFSTASGVFGLVAGPSNALRPWILSEAFQLASAGGCATGLPTRSRHACDFFVRVLTTGPGSATAFGGAFARNHGSRLFTLKLPLFHSPAVSFLISPALGSFSRGLPSRRLLPDTGTLFVCLSAFLIWRIQLFIFEPPESPTPC
Ga0247528_110132	Ga0247528_1101321	F016972	TYAIPVVNLYLTIYEFYLFSCGTKTSRYDPYELGYRRATKIFTKXCKTKPL
Ga0247528_110172	Ga0247528_1101721	F007739	RAAESKIDVVRFKIIPGDWGKVRSGWLTWLLLNRAARHGSGGRIHQFLWRCSRTVKMRMRDLAARGN
Ga0247528_111068	Ga0247528_1110681	F018868	MRSKTSHAAKSGVGEHKARESESAQHCADGKECVAS
Ga0247528_112332	Ga0247528_1123321	F014631	PSDPMDRSLSDRHARPELGIRIGCDVGPLLPAAGLIQPRIVALVLVRSPFR
Ga0247528_112445	Ga0247528_1124451	F044924	MKAPEIGADNGSKVMNSPGFGFETKPSGGALDRTGSQRSFGVEAKEQVGSVDLVMVAKASLRASERPFRVSGSGRMQVY
Ga0247528_112695	Ga0247528_1126951	F012875	PGFTARLSEPPACSAFDPQPDTPDSTFAARRRRFSARAGSVQQTFPQRTCIRPEPETRNGLSLARNDAFATITRSTFLACSFDSTYKLCADPFHRRLSTRFGFEAATGRIHHPRPVIHAPLIRSHDATPSPLLFGRFRPLDQSVQRASSQEARLTGHPICLLLPAALSFDCASDQCSKLRFVPLGY
Ga0247528_112909	Ga0247528_1129091	F065397	LYFPDKLTLVMAILKTTATTDMRWMEIAPPRRVCMGRRRPVEKTLWPIAEERSLSNGELMDGLRPTFPAVSGFNAEGDNERFASAEC
Ga0247528_113803	Ga0247528_1138031	F001418	GKVAEAEFTSSSGSVRALSVNAKKGLSDEGRLETAPSRVK
Ga0247528_113833	Ga0247528_1138332	F044924	MKAPEIGADNGSKVMNSPGFGFETKPSGGAWDRTGSRGSFGVEAKEQVRSADLVMVAKASLRASERPFRVSGSGGMHE
Ga0247528_114315	Ga0247528_1143151	F004183	RGANEDRAIPEGGPNGCEASRSFDPEGAKTPEGERRQAAQPAKQAGKECNGFEAWMQPEAGANQRLAAEPKSRTGRKTGKRVSEVAGQDL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300023680: Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRA2 (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences