3300023556: Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRU3 (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300023556
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128948 | Gp0290737 | Ga0247519
• Sample Name: Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRU3 (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 26623014
• Sequencing Scaffolds: 20
• Novel Protein Genes: 20
• Associated Families: 16

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → Narnavirus → unclassified Narnavirus → Plasmopara viticola lesion associated narnavirus 22	1
All Organisms → Viruses → Riboviria → Orthornavirae → Kitrinoviricota → Alsuviricetes → Martellivirales → Togaviridae → Alphavirus → unclassified Alphavirus → Fusarium sacchari alphavirus-like virus 1	1
Not Available	13
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea sitchensis	5

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Czech Republic: South Bohemian Region
• Coordinates
  • Lat. (^o): 49.0431
  • Long. (^o): 13.617
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004473	Metagenome / Metatranscriptome	436	Y
F006559	Metagenome / Metatranscriptome	370	Y
F006591	Metagenome / Metatranscriptome	369	Y
F011845	Metagenome / Metatranscriptome	286	Y
F012750	Metagenome / Metatranscriptome	277	Y
F018933	Metagenome / Metatranscriptome	232	N
F024793	Metagenome / Metatranscriptome	204	Y
F030619	Metagenome / Metatranscriptome	184	Y
F044295	Metagenome / Metatranscriptome	154	Y
F058585	Metagenome / Metatranscriptome	134	N
F060406	Metagenome / Metatranscriptome	133	N
F065397	Metagenome / Metatranscriptome	127	Y
F067292	Metagenome / Metatranscriptome	125	N
F079408	Metagenome / Metatranscriptome	115	N
F097372	Metagenome / Metatranscriptome	104	N
F098405	Metagenome / Metatranscriptome	103	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0247519_101987	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → Narnavirus → unclassified Narnavirus → Plasmopara viticola lesion associated narnavirus 22	1966
Ga0247519_107354	All Organisms → Viruses → Riboviria → Orthornavirae → Kitrinoviricota → Alsuviricetes → Martellivirales → Togaviridae → Alphavirus → unclassified Alphavirus → Fusarium sacchari alphavirus-like virus 1	1041
Ga0247519_109668	Not Available	851
Ga0247519_110312	Not Available	807
Ga0247519_110532	Not Available	795
Ga0247519_112138	Not Available	711
Ga0247519_112468	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea sitchensis	695
Ga0247519_112486	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea sitchensis	694
Ga0247519_115190	Not Available	586
Ga0247519_115372	Not Available	580
Ga0247519_115411	Not Available	579
Ga0247519_115657	Not Available	571
Ga0247519_115665	Not Available	571
Ga0247519_116114	Not Available	556
Ga0247519_117687	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea sitchensis	514
Ga0247519_117801	Not Available	512
Ga0247519_117852	Not Available	511
Ga0247519_117867	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea sitchensis	510
Ga0247519_118064	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea sitchensis	506
Ga0247519_118216	Not Available	503

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0247519_101987	Ga0247519_1019871	F030619	LKVLCHNVRGSALHSKRWKNAPCNIRKNVVDTLCHLAVRQPENGFAFTRLSRSLPEPPQRECVRHLQAAKLMASAEFPTSVAALDSLRSFVALTPGVSGDGVLRHPRRLPSSSSSCLEWPATRGGIDGYLEHLGHMCEEAGAAQSSFHAYAGDSLGGFCLRKASVVLRPCAGVAADLRESYRCAGLLYLRSQGKPFGMKATALRTPGYKVRVVGVPDCLTFVEGSWVRSSLRWLAPGHWRIDGKSRKIPGGLHYRAGRRFASLDLSKATDGLSHPAVRVVIEGLASRGLIRLTDLAMSMRSLGLERGATWSFPDLGDKIGEGSFLRGSPMGTPLSFVVLSWVNAWATSTFSRALTHGDDAVGRYTPGSLELDLYASRVASVGAALNREKTFKADHTWTACEIFALPRDHGEDKMTLFYPPSIPPPALRAPVEADQRLENLWLRRMERIMKSRFPWIVKDPRLHLPVQVGGLGYTGRGLAVGVSVRRRLGALVSRGPSAVIAADLIGKKPFREVGLYPRPLCRVVRPGSYWKAVRATEQWFQAGGDTHVPLESLLSFKSCLIEDEVRLLEGDKFKRKRVAGRPDRTRAGAVFRRLGVAPCRPLTRRWGCSALIRWASLSRESEVTVPEDIASEIRERIPDPT
Ga0247519_107354	Ga0247519_1073542	F097372	MSDESIAHTIRNILKQCNSTVISIGHTEGHFLSSKQFAVLEECADTLENLESVAGVDTPATSAITQASSEEDGFRARRLELARELKQKQIRLTAAPPGDRSQINLEIGKLLSERARLDKLIKQFDATTIA
Ga0247519_109668	Ga0247519_1096681	F058585	HSQYSRCCVLRLPQWPPSSFRWRCYHWLRWLSELRLASGPCTPARPVANLPARIGFVSFGSTGCKPPTCVDCSALPLVLRRSIWLAPDDPGLIGLAPDNPGSTRLAPHGPFLRLGRQPTSDSHRCRPLARLAASSGLRLMLPLPLGWLRFQFALAASPSALTVREPLGLRLVAPSPAEPVMHSLFQLNLASPAKPSMSILYPLALASSGIFQLNNFRLGSAFALLVRPAIPLRLAPQVSPSVRVYGHRSGSHRLFAP
Ga0247519_110312	Ga0247519_1103121	F018933	TRVAGLSLCCLRRSRITPRSTLDSLYRPRIAPRSVLIDRCCPPIARRSTLNAPRRSQIAPRSTLCARAGHGLLRVQHLESSPRVQIAPYSTLCVPRRSQIAPRSTLPAPYRLRIAPLSAIDAPCRSTDISVRLHFAPCAVHGLLRAQHFKLRTAHRLLCVRRLHFVPITDCSAFLTPCLVLLADCSVLNT
Ga0247519_110532	Ga0247519_1105321	F024793	VNSASPELSLWFQRSRINQPDPAFPRSPGIILKLDNFNLTLNR
Ga0247519_112138	Ga0247519_1121381	F060406	GELNSTTGCRVLRLPQRPTSRFRLRSRPLAALAPNLRLASPASHSSSTGGRLRRLGSTFCRSARTVANLRLSPALRASVRPLADLPTFVGVLPQARPRTNFRFAPDFDPSTRLVSNFRFAPVVVATSACAFCCCGLWLAPVPPVCQTGGELPTRIGCSASGFTGFDSLGLRLVLLPPAGFLMHP
Ga0247519_112468	Ga0247519_1124681	F065397	VQVRVFVSRLYSPHKLTLVMAILMTKATTDMRWTEVAPPRRVFMGRWRPLEKTLRPIAEERSLSNGELMDGLRPTFPAVSGFKAVDDNERFASAEC
Ga0247519_112486	Ga0247519_1124862	F006559	RSKICSPEVDWVISRAGQPARQPNLKKPTALRGAVGVWDCESSDFDI
Ga0247519_115190	Ga0247519_1151901	F098405	LCQLRIDAPVRVRGFSVPIEARLSMRPFTLRQRRPTFRSAPAARSTLLAYIFETISRSASDPFGLALPPPHGLLWPCEARSSHETRCQIRSRNSLPVFRPSLPVGISQSLRIKALSLTPNQEACPCRLPDFPSLPAAPEIITYHVSASDHRSGSATSRQACC
Ga0247519_115372	Ga0247519_1153721	F079408	MPVRPFGSAAGIGLPQLPLLPRFRPVAFPAGELIRLLSPSPLPSGNFCSLGIKAFNGRRRRPVRLPIPPDFRLLPATVLFLEEGYGSSFAVRYVFGGLLF
Ga0247519_115411	Ga0247519_1154111	F012750	LQARERPLRKTGSIEETDCGGPEGVDPEGEKSNLGERNGETPGATQCGALYRACRWRARLGIGSL
Ga0247519_115657	Ga0247519_1156571	F006591	PSQVGGRLLDASSRGNAELSVSWQDRRQNCFQRLLGEAFQHDSQVPCRGTVPYKVMRLLRRNLVTAVLEVGPRELPPERWPKGTGLASYPSIDI
Ga0247519_115665	Ga0247519_1156651	F004473	VVKPIERFDPEGWKQPEGEWRSDGIMRAPEIGADNGSKVMNSPGIGFETEPSGGALDRTGSQRNTGVETKGQGRSVDLVMVAKASLRASERPFRVSGSGRMQVLEPRFLH
Ga0247519_116114	Ga0247519_1161141	F067292	DESVVQPLLRPLATPAADPQLALATASTGCAGFKPPTCVGCSTSGSTGGQPSGSDRCSVLRLDRWQAPGFHRLLCASVRPGADLPACAGVHPPARPATNCRLTPGADSSARLVPNFRLSPVVVAAFGLRLLLLRLLQLALGVARLPHRRRTSDSHRLLRRPASPVSTHSTCVGCFYFRLGLRCTP
Ga0247519_117687	Ga0247519_1176871	F065397	MAILKTTATTDMRWMEIAPPRRVCMGRRRPVEKTLWPIAEERSLSNGELMDGLRPTFPAVSGFNAEGDNERFASAEF
Ga0247519_117801	Ga0247519_1178011	F011845	PGFTVRFSDPSACGRSLCSQMPGLNRSSLAITAFQQETGHSFKRVYAARPHRTQHPAGTGISIRPFARSQRRFRHHCEVNVPDLYLRFHIRNPRESVRLPAPSLRSVSRPNRGDINARNPFPAPISNVPDISPISTPLQVLFRKPSGSKRSTGSCLRKPVSPDIRSPLTP
Ga0247519_117852	Ga0247519_1178521	F044295	GCGERAEIGRIRKADRTAATPIERFDPEGAKTPGGEWRWGERSDEFAGESATGLKQGSGGNWGKPVPAAERKDRTGMAVGDRDSEVAGQDL
Ga0247519_117867	Ga0247519_1178671	F065397	VQVRVFVSRLYSPDKLTLVMAILMTKATTDMRWTEIAPPRRVFMGRRRPLEKTLRPIAEERSLSNGELMDGLRPTFSAVSGFNAEDDNERFASAEC
Ga0247519_118064	Ga0247519_1180641	F065397	MAILKTTANTDMRWMEIAPPRRVCMGRRRPVEKALRPIAEERSLSNGELMDGLCPTFPAVIGFKAEGDNERFASAEY
Ga0247519_118216	Ga0247519_1182161	F024793	VNSASPELSLRFQRSRINQPDPAFPRSPGIILKLDNLNLTLNR