3300023543: Human gut microbial communities from healthy child feces in Northridge, California, USA - CDI_42C

Overview

Basic Information

• IMG/M Taxon OID: 3300023543
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133482 | Gp0296400 | Ga0257048
• Sample Name: Human gut microbial communities from healthy child feces in Northridge, California, USA - CDI_42C
• Sequencing Status: Permanent Draft
• Sequencing Center: University of California, Irvine
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 130628124
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Child Gut Microbiome
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Gut → Child Gut Microbiome

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: Northridge, California
• Coordinates
  • Lat. (^o): 34.2381
  • Long. (^o): -118.5301
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F062845	Metagenome	130	N
F067720	Metagenome	125	Y
F070093	Metagenome	123	N
F090515	Metagenome	108	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0257048_100522	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	45932
Ga0257048_101265	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	19185
Ga0257048_101825	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	12898
Ga0257048_102618	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	8827

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0257048_100522	Ga0257048_10052228	F062845	MKKTPFILHEKFRSDNNEQRKERFQKEFERYIIDGLLNAVPPRSCA
Ga0257048_101265	Ga0257048_1012659	F067720	MASTTYEHFVDANKMYAAQDHFRDITKMVCARLRGLTKTYHFAVIGNMVRNAGQLPQPFWLGAARGGGSCSAARCAART
Ga0257048_101825	Ga0257048_1018251	F070093	LAEFCPFRIDPPMEPEQEHLSKLYSGSGIHSLPELNPN
Ga0257048_102618	Ga0257048_1026182	F090515	VTTCCKAGPTAALQGTAPGRVACLEFAGGEKRKTNIAADYAVKALAFTALLCRHIGSIRTFLKS