3300023538: Human gut microbial communities from healthy child feces in Northridge, California, USA - CDI_148A

Overview

Basic Information

• IMG/M Taxon OID: 3300023538
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133482 | Gp0296385 | Ga0257033
• Sample Name: Human gut microbial communities from healthy child feces in Northridge, California, USA - CDI_148A
• Sequencing Status: Permanent Draft
• Sequencing Center: University of California, Irvine
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 64831888
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Child Gut Microbiome
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Gut → Child Gut Microbiome

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: Northridge, California
• Coordinates
  • Lat. (^o): 34.2381
  • Long. (^o): -118.5301
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026592	Metagenome / Metatranscriptome	197	Y
F068811	Metagenome	124	N
F076190	Metagenome	118	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0257033_11542	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	8022
Ga0257033_12213	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	5686
Ga0257033_14572	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2776

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0257033_11542	Ga0257033_115428	F068811	MDQDGSEHNICPNREGLCPGKKQHGASGWKKIFQHGKEPLRNKDSVSQYCNKKAAVLLILNENVSETLCIFSIDKTNCCRI
Ga0257033_12213	Ga0257033_122137	F076190	VRTAGGSITISAKNVFMAASRVSGRVWSLVRITIPNDLKSVKIRVEKPQNNFLYPYFQREPL
Ga0257033_14572	Ga0257033_145721	F026592	LRTASPQGIAALAAQGGVATLTERSDATFSVKQFSSADGE