3300023495: Human gut microbial communities from healthy child feces in Northridge, California, USA - CDI_77C

Overview

Basic Information

• IMG/M Taxon OID: 3300023495
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133482 | Gp0296414 | Ga0257060
• Sample Name: Human gut microbial communities from healthy child feces in Northridge, California, USA - CDI_77C
• Sequencing Status: Permanent Draft
• Sequencing Center: University of California, Irvine
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 85556225
• Sequencing Scaffolds: 5
• Novel Protein Genes: 12
• Associated Families: 12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Phocaeicola → Phocaeicola dorei	1
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Child Gut Microbiome
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Gut → Child Gut Microbiome

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: Northridge, California
• Coordinates
  • Lat. (^o): 34.2381
  • Long. (^o): -118.5301
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032312	Metagenome / Metatranscriptome	180	N
F044555	Metagenome / Metatranscriptome	154	N
F051936	Metagenome	143	N
F060985	Metagenome / Metatranscriptome	132	N
F062845	Metagenome	130	N
F064817	Metagenome	128	N
F068811	Metagenome	124	N
F076189	Metagenome	118	N
F080163	Metagenome	115	N
F094005	Metagenome / Metatranscriptome	106	N
F101357	Metagenome / Metatranscriptome	102	N
F105375	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0257060_10100	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Phocaeicola → Phocaeicola dorei	134072
Ga0257060_10247	Not Available	68687
Ga0257060_10655	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	23713
Ga0257060_10674	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	22930
Ga0257060_11172	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	12176

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0257060_10100	Ga0257060_1010019	F051936	MKQEGTGLCPVLPLALRGKAFGFSVLQEHAVMTLVISIFFATLIIRYLSIHISIKK
Ga0257060_10247	Ga0257060_1024723	F094005	MKKEVIKLKEGNSVIYQDKTLMEKANVVSIDKKNGTAILSNKVIITRTTNLEGQFTRLDGKGNAIILPCTTENEQKYNSFVAYHQSKKSLEAIKKWLDDNGKHKDDETTEKVITLDKKLKKLIEKLNE
Ga0257060_10247	Ga0257060_1024725	F032312	MPKIKDYDEDLSAHKLLRERARDSKGRFIKKDLPPYLGSEQVLKPKNYYHFDSHGNYKGSSMNFDALVCLGFTWFKLLGVALMMLLWPIVFIYALNDGIKGYPFKKYAIPYIFILVAWFIIFLYGLVS
Ga0257060_10247	Ga0257060_1024726	F060985	MSNIDEKAKNNFTIEMRIFENYEKVKHEIIKAIDFLEHSGTAMGMCNIFKNQDHEFWYRVIKPWFQPERFGITHLWFPSGFSFIGYGEYHTIRGNRWLKTPIDKIDRENRISGYWFPYYKKYIPHRIKVLKLALKDLERIKEEYGKD
Ga0257060_10247	Ga0257060_1024727	F080163	MKTIKFLQESFETKERFQQEISFKYSYNRDTVESIDFRINQRNIRYFYEAMQNFENSLVDEFKEKKNNFCDAKQFLESINDFDKILFVIITYMKTYFDFCKDYSKISLHVHLVQFDFTTSILIQGFYNYTHRDLSFSIKLESEILDSEIELLQRKLNLIREEICELIGVNPNLEKQGHENNYVFNLNIDSDNQIGFFLQETEL
Ga0257060_10247	Ga0257060_1024731	F044555	MKTTNPSSRITISQNGNQILTCKVYKEPNYILSMSNEEILELISGLDYMGNIPTVPDLEKPIEIQVSTTRQIPLEQNKEVQTKIKEIIYNNLYDTLIDELKSTISRFQAQYNIQEINPYLQDILQNPEDLVSLSQHHKR
Ga0257060_10247	Ga0257060_1024737	F101357	MNLNNITTALKTGITIYQYEQWQNTGSVNLMQKESHMLSKVWLKTNIHNPDSLDKPFIQLSATFTSEFDIQEYNEWLNANQYKLYPLLLDILKISLKDDFYNYSNASNIHYEGGKFPSMLTIQLFNLEF
Ga0257060_10247	Ga0257060_1024740	F105375	MKNNETFQTTQHLDKLVTNLGLQIQELFSLDLEEILDYSNNLMNLLVNAYIENQCLALSAMISKQDGFAIYSFLFQTPDTSNGAADALVSFAMNFTDGEANIKSINRISSNIMQITFIV
Ga0257060_10247	Ga0257060_1024742	F064817	MNIKNLFNRFRKSKESELSYSLNLIYLEDTRVVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKNRYWVYDKEPYLLYYKVPLIVNTSRKLSGKSDMVITKEKYQAAKALVPAHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVGLEEILELMQHNWLKEFELLVFKRNYDTDMLFLSHSFTYILDQTEEEGRRICIQNIIERNINQENQDENETI
Ga0257060_10655	Ga0257060_1065518	F076189	MPGRLCYLPGIAFFLSPFIKPLLYVEKLQIGTVLPVVSDLYREFAELSAHFDLRAIQSAQKQLRMLCNFHENTFGLLIFYTNYAIL
Ga0257060_10674	Ga0257060_1067411	F068811	MDKMDQDGSEHNICSNREGLCPGKKQHGASGWKKIFQHGKEPLRNKDSVSQYCNKKAAALLILNENVSETLCIFSIDKTNCCRI
Ga0257060_11172	Ga0257060_111723	F062845	MEKTSFILHEKFHSETNQQRKERFQREFERYIVDRLSAADPSKAGV