3300023439: Hydrothermal Fe-rich mat microbial community from TAG Site, Mid-Atlantic Ridge, Atlantic Ocean - 665-MMA12

Overview

Basic Information

• IMG/M Taxon OID: 3300023439
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133538 | Gp0295821 | Ga0256752
• Sample Name: Hydrothermal Fe-rich mat microbial community from TAG Site, Mid-Atlantic Ridge, Atlantic Ocean - 665-MMA12
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Delaware
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 160924757
• Sequencing Scaffolds: 7
• Novel Protein Genes: 9
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida → Oxytrichidae	1
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	1
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Hydrothermal Fe-Rich Mat Reference Genomes
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Fe-Rich Mat → Hydrothermal Fe-Rich Mat Reference Genomes

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine hydrothermal vent biome → marine hydrothermal vent → microbial mat material
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Surface (saline)

Location Information

• Location: International: TAG Site, Mid-Atlantic Ridge
• Coordinates
  • Lat. (^o): 26.137196
  • Long. (^o): -44.826442
  • Alt. (m): N/A
  • Depth (m): 3626.4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038413	Metagenome	166	Y
F039667	Metagenome / Metatranscriptome	163	Y
F057990	Metagenome / Metatranscriptome	135	Y
F067779	Metagenome / Metatranscriptome	125	Y
F075520	Metagenome	118	Y
F082766	Metagenome / Metatranscriptome	113	Y
F083237	Metagenome / Metatranscriptome	113	Y
F096262	Metagenome	105	N
F102809	Metagenome / Metatranscriptome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0256752_1042406	All Organisms → Viruses → Predicted Viral	1043
Ga0256752_1051147	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	947
Ga0256752_1065762	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida → Oxytrichidae	833
Ga0256752_1067900	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	819
Ga0256752_1086748	All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	723
Ga0256752_1100764	Not Available	670
Ga0256752_1114264	Not Available	629

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0256752_1042406	Ga0256752_10424062	F057990	MVQKAFSMLDKDCSGQVTIQDIIGIYDVSMNPEFIEGRKTKEDILGAFLNEFDGARGNNDGVITQAEFFDYYTDLSMSTPSDEYFVRMMESAW
Ga0256752_1042406	Ga0256752_10424063	F039667	MAFYGVGLDVKVRELNLQFKLAIQSKGGVGLRSLKRIFQRMDFNGNKKLDASEFE
Ga0256752_1045653	Ga0256752_10456532	F102809	VLLWFHLYSSFVAFVFIKNKKEGMMDHWRHAIGDINKTTGSIHNDQRMPADHKKNYVRYSNFHQVRRNKKLSMIWLNWWCRDQSFRKYFEMRKRHGIKPSLSGFSHEHIYDDVAKKNSELAAMRYSRSAM
Ga0256752_1051147	Ga0256752_10511471	F082766	VLFNLAVPLYCPTEDSEHNLYAISTNGDVYQVTEGQMEVAFQTGGQPTALIFDSQGSSFIADQAHQAIMS
Ga0256752_1065762	Ga0256752_10657622	F083237	MFKQSRFFLSVAQKMTYEDGFVFTENNVVQYLAELEEYISSLITYTAFKRDEPNAAVSAIPLERLPQKEFNKRDMQIDPSVDAHWN
Ga0256752_1067900	Ga0256752_10679001	F067779	MVSNGSKPRDMAQKWRAFKNIARFFKNPMSYMYWKTQTLHSQNRVRIIWVLLWFHLYSSFVAFVFIKNKKEGMMDHWRHAIGDINKTTGSIHNDQRMPADHKKNYVRYSNFHQVRRNKKLSMIWLNWWCRDQSFRKYFEMRKRHGIKPSLSGFSHEHIYDDVAKKNGELAALRYSR
Ga0256752_1086748	Ga0256752_10867481	F038413	MCAFYRSREGALTAADSMTSLGSLYGQSTTASVQIPKQATSIVGIIATVATDSATNGATTFAM
Ga0256752_1100764	Ga0256752_11007641	F075520	MKTLHYILNTKTDESFDTNEMRFYANNWSPEMDEDIGYLQGLINNDPVKFKDCVIETLEFEND
Ga0256752_1114264	Ga0256752_11142641	F096262	MGVSTVGTGTDLCTGFKLTGTALQEGDATFMGPAIAQAASGGTGVANCVMQEKTALGVTSGNTLDIQVAVTTAA