 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300023253 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0114820 | Gp0255787 | Ga0222695 |
| Sample Name | Saline water microbial communities from Ace Lake, Antarctica - #1398 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 167955693 |
| Sequencing Scaffolds | 22 |
| Novel Protein Genes | 23 |
| Associated Families | 19 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 1 |
| Not Available | 14 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi | 1 |
| All Organisms → cellular organisms → Bacteria | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Psychrobacter | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → unclassified Campylobacterota → Epsilonproteobacteria bacterium JGI 0002006-B18 | 2 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → unclassified Marinobacter → Marinobacter sp. G11 | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Saline Lake Microbial Communities From Various Lakes In Antarctica |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | aquatic biome → saline lake → saline water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Hypersaline (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Antarctica: Ace Lake | |||||||
| Coordinates | Lat. (o) | -68.4725 | Long. (o) | 78.188 | Alt. (m) | N/A | Depth (m) | 14 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F010230 | Metagenome | 306 | Y |
| F026204 | Metagenome | 198 | Y |
| F026445 | Metagenome / Metatranscriptome | 198 | Y |
| F031722 | Metagenome | 181 | N |
| F039448 | Metagenome / Metatranscriptome | 163 | Y |
| F042665 | Metagenome | 157 | N |
| F043706 | Metagenome | 155 | Y |
| F044910 | Metagenome | 153 | Y |
| F045770 | Metagenome / Metatranscriptome | 152 | Y |
| F054483 | Metagenome | 139 | N |
| F054974 | Metagenome | 139 | Y |
| F063228 | Metagenome | 129 | Y |
| F063346 | Metagenome | 129 | N |
| F067269 | Metagenome | 125 | N |
| F069498 | Metagenome | 124 | Y |
| F078142 | Metagenome / Metatranscriptome | 116 | Y |
| F079376 | Metagenome / Metatranscriptome | 116 | Y |
| F084938 | Metagenome | 111 | N |
| F096357 | Metagenome | 104 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0222695_1003600 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae | 4656 | Open in IMG/M |
| Ga0222695_1004952 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 3619 | Open in IMG/M |
| Ga0222695_1007376 | Not Available | 2606 | Open in IMG/M |
| Ga0222695_1010524 | Not Available | 1972 | Open in IMG/M |
| Ga0222695_1011255 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi | 1873 | Open in IMG/M |
| Ga0222695_1021686 | Not Available | 1157 | Open in IMG/M |
| Ga0222695_1021943 | Not Available | 1147 | Open in IMG/M |
| Ga0222695_1023459 | All Organisms → cellular organisms → Bacteria | 1094 | Open in IMG/M |
| Ga0222695_1030790 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Psychrobacter | 898 | Open in IMG/M |
| Ga0222695_1034013 | Not Available | 838 | Open in IMG/M |
| Ga0222695_1037776 | Not Available | 779 | Open in IMG/M |
| Ga0222695_1039925 | Not Available | 751 | Open in IMG/M |
| Ga0222695_1042659 | Not Available | 718 | Open in IMG/M |
| Ga0222695_1051359 | Not Available | 633 | Open in IMG/M |
| Ga0222695_1054600 | Not Available | 607 | Open in IMG/M |
| Ga0222695_1057101 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → unclassified Campylobacterota → Epsilonproteobacteria bacterium JGI 0002006-B18 | 589 | Open in IMG/M |
| Ga0222695_1057746 | Not Available | 585 | Open in IMG/M |
| Ga0222695_1058650 | Not Available | 579 | Open in IMG/M |
| Ga0222695_1059197 | Not Available | 575 | Open in IMG/M |
| Ga0222695_1059377 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → unclassified Campylobacterota → Epsilonproteobacteria bacterium JGI 0002006-B18 | 574 | Open in IMG/M |
| Ga0222695_1062817 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → unclassified Marinobacter → Marinobacter sp. G11 | 553 | Open in IMG/M |
| Ga0222695_1070531 | Not Available | 512 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0222695_1003600 | Ga0222695_10036001 | F026204 | MQDTIPLTDAPRALRAHGLSTTYNALWIAIVAGHVPAERVGKRWYVREADLPIIAQILKK |
| Ga0222695_1004952 | Ga0222695_10049521 | F063346 | YSTIYNKDKATRPPRLSEPTKGRRALSTARDGGQERLPHSTFDVERSMFTRLRRRQRRPGFDVQIVASEITTKPSYHVEITYTGQEF |
| Ga0222695_1007376 | Ga0222695_10073761 | F042665 | MSFATLIMLSSVVTVVVTLGVIPLLTLTGVGPGWGLFFAPAAGMAAGYSTARWLGGYIDD |
| Ga0222695_1010524 | Ga0222695_10105241 | F042665 | SAHRYGRPKTMTPPKISFATLILLSAMVTVVVTLGVMPLLALTGSVAGLFFAPVAGMAAGYSTARWLGGYIDDK |
| Ga0222695_1011255 | Ga0222695_10112552 | F026445 | MSIAEARTERKNRTITLYLGSTLAEYGATYLTAEGIQAVIERVEVADSINWGCLAREHHEGCPRLLRFTYHNSYVRWVKHFNGRRSSVTILRVRCLDCGAVFTVQPSFVIRYKRYGTDAVEKLMVLLFITEDSYRMTGVSQALGMDTKQAGTWIALETEQPHAIQPRALWGLVQWLGQLSPAQLNLALGVDPPEYILEDEKHVKECGQKAYVPMIYAPKEALIWWVDYLHSASEDAIRNSLERFKAISDCLSHIVGATVDGWEGAQNALRAAFPGIALEECHFHALLKLGKHLATYRRQRKQAGKPVSDTEEANIREAFTKVLKAPTPEAYQEALDELPDAFKHPTMASRKQSLVEKQALFQAWTTDDNLAVVSTALDQCMKFLKRKFQNMQTFRGDESGLATVNAWAITRNCWRFLKGAIRAGLSPLELAGAGFLGIPWLQLVNLVLAAWPTLHLAAPVLCPST |
| Ga0222695_1021686 | Ga0222695_10216861 | F054974 | MKSSQLNKSRFIVGIVLVVIAVLMFLFAKGDYSTAGAIGIGVLGLISIAISRRR |
| Ga0222695_1021943 | Ga0222695_10219432 | F079376 | MFDMMITRQPGRPCVSLEVLRVCRTTEEGGRQMRHRESDSFVVPVKAGNAAGGKEATHGSAE |
| Ga0222695_1023459 | Ga0222695_10234591 | F069498 | KYLEKHGVIEVDAFDQMFGKPDDDPEPTPEQGGMSLEQLMAGGADDYD |
| Ga0222695_1029201 | Ga0222695_10292011 | F044910 | VPVGTKAIITAVDGAWLYIHELIGDLAVAGDVTVLAGVRELGKFSLDAGQGLTLQDEPGEDNRPRFECRPGEDFKLTVTGGTFTGAVHYSLRY |
| Ga0222695_1030790 | Ga0222695_10307901 | F063228 | VTVQPRDRSVVIAASPVEDGAEPPDWANTRVPAAIPDATSDTNTLSMLVSVRAVLVKASVKSPPLILSKALAGKLVRLVQERQAWVKIVPSDVSIRGKLVRLVQPNHAWAKLVPSDVSIRGKLVMLLQPNQAREKLVPSDVSMSGKLVRLLQLYQAAAKLVPDDVSIRGKLVRLVQLYQAAAKLVPDDVSIRGKLVRLVQFCQALLKLVPDDVSMSGKLVRLLQLYQA |
| Ga0222695_1034013 | Ga0222695_10340131 | F045770 | MADLTKDAPLRFLGEAKSEKWVLDNSAAQSVFKGQPMIMDLSADTVYPRGYVDATVVAATDIFIGIAAEAKAVATADTETDNEIEIYTYPTIIGFKSSVFTDADVGDTVYMSDSATLSATAADNPQIGKLQRV |
| Ga0222695_1037776 | Ga0222695_10377762 | F043706 | MHILYGILSTALLVNLFAMALDTGQASIWVLILCAVVIIFAGGGK |
| Ga0222695_1039925 | Ga0222695_10399252 | F078142 | MSLGIDTFNAVYNSLTIARCKIRIGRTVIAKALCAGIGKLRENTDEGQLGSIDANVRLLATDEPDDEIKTGTVIEILQNGQDEKTGWVKARVGGRFPVGGLTRLGLEAVNE |
| Ga0222695_1042659 | Ga0222695_10426591 | F054483 | QEYTSPMTFKKPDLSRFNFTVTGKPSEQYGEQVAITAKLVDRPYLFIHKIFEREGWTLEEITSAYQNATKHSGNCDPAKAWWANRRRRNKV |
| Ga0222695_1051359 | Ga0222695_10513591 | F084938 | RHYDPKELRKRFASFTPGKNGGSGMGSIGYHAKQAGADVAGIGARHRLLNIPGPSHVPVGMMPTAPGQGMPSAPRAASVVDLICARIKDNPLTAVELLADEVARLSPADRDTVFEECKLYPGLGKAKMQAAVKRAVTAFLAAKGAVALQTPEYAELNYYFIVRNEAGQAVAVDARGGMQPQARTQFRDAMAQLPPIMIEDKATGNARAKLA |
| Ga0222695_1054600 | Ga0222695_10546002 | F067269 | MIKSHTGSYTCALERRLPDSDASFFWDTSDSKKKRKGYRDGLKYDAVSGTKRTRYRGYDIVYTRLKNSSFCAHTIDVLGEGVGFEKNTPESEDTEEVYAMLDEW |
| Ga0222695_1057101 | Ga0222695_10571011 | F010230 | LLQSFQVWVKLVPLLVSINGNELRLLQSCQVESKLVPLLVSINGNELRLLQYRQVAVKLVPLLVIINGNELRLLQPFQAKSKLVPLLVSINSNEVRLLQSFQAELKLVPSLVLINGNEVRLVQFRQVELKLVPLLVSINGNELRLLQYHQAELKLVPLLVSINANELRLVQSRQVSRKLVPLLVSINGNELRLLQF |
| Ga0222695_1057746 | Ga0222695_10577462 | F043706 | MRHILYGILSTALLVNLFAMALDTGQASVWLIILCGVVVIF |
| Ga0222695_1058650 | Ga0222695_10586502 | F039448 | MNTSKAIELAMAETLRKYAEMGAAVVVRAWQSLESDGSWNENPDRKFPMIDVRCSPPGHDDNESTLQVECRIMMGTNTDDDKSHAFISNMYEDVQDVCDTLFSQYKTGVFTGEELAYFLARVLAETSSDAFQFGGLTF |
| Ga0222695_1059197 | Ga0222695_10591971 | F031722 | MDETATTQTPTPTQKVTKPRFYHEQAAAEKLGLSKETLRHWRVGYTVKSKGKRYTYPPKMKDGDGTTWKKEYPAKFSPILWDADFIDTLASALHTQRIVMGDLKP |
| Ga0222695_1059377 | Ga0222695_10593772 | F010230 | LFQVWLKLVPLLVLINGNELRLLQFRQVWLNLMPLLVSINGNELRLLQLYQVVSKLVPLLVSINGNEARLLQLYQVKPKLVPLLVSINGNELRLLQLYQV |
| Ga0222695_1062817 | Ga0222695_10628171 | F096357 | MNKLLDHPIIKRLHRESSVTLTDLIDRKLFIEPPAEPCGHIHPSAWDLFYQEDLQPPESERLRAARKRNPRLILAAALVVASVTGKLSKEQKNMAFDFTRYVEAHEYELVQLVRSRTGGVNTAEKRKEEAAERMETAHRLWLKLDKPERDRCAIIGKRMGYKANTV |
| Ga0222695_1070531 | Ga0222695_10705311 | F031722 | MHIDETATTQTQKVTKPMFYPEQAAAEKLGLSKETLRHWRVGYTVTSKGKRYTYPPKMKDGEGTTWKKEYPTKFSPILWDADFVDTLASALHTQRIA |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |