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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300023203 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0130338 | Gp0238866 | Ga0255812 |
| Sample Name | Combined Assembly of Gp0238866, Gp0238878 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | University of Toronto |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 1202075960 |
| Sequencing Scaffolds | 35 |
| Novel Protein Genes | 39 |
| Associated Families | 33 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica | 2 |
| All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division CPR1 → candidate division CPR1 bacterium ADurb.Bin160 | 1 |
| All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 1 |
| All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon | 1 |
| All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae → Candidatus Anammoximicrobium → unclassified Candidatus Anammoximicrobium → Candidatus Anammoximicrobium sp. | 1 |
| All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → Candidatus Velamenicoccus → Candidatus Velamenicoccus archaeovorus | 2 |
| Not Available | 17 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales | 1 |
| All Organisms → cellular organisms → Bacteria | 5 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → unclassified Ignavibacteria → Ignavibacteria bacterium | 1 |
| All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon ADurb.Bin009 | 1 |
| All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Candidatus Methanofastidiosa → unclassified Candidatus Methanofastidiosa → Candidatus Methanofastidiosa archaeon | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Metagenomes From Anaerobic Digester Of Solid Waste |
| Type | Engineered |
| Taxonomy | Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Anaerobic Digester Digestate → Metagenomes From Anaerobic Digester Of Solid Waste |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | University of Toronto, Toronto, Ontario, Canada | |||||||
| Coordinates | Lat. (o) | 43.5479 | Long. (o) | -79.6609 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000769 | Metagenome / Metatranscriptome | 898 | Y |
| F005744 | Metagenome / Metatranscriptome | 391 | Y |
| F008824 | Metagenome / Metatranscriptome | 327 | Y |
| F018746 | Metagenome / Metatranscriptome | 233 | Y |
| F022996 | Metagenome | 212 | Y |
| F023249 | Metagenome | 211 | Y |
| F026449 | Metagenome / Metatranscriptome | 198 | Y |
| F029922 | Metagenome / Metatranscriptome | 187 | Y |
| F030486 | Metagenome / Metatranscriptome | 185 | Y |
| F041155 | Metagenome | 160 | Y |
| F045728 | Metagenome / Metatranscriptome | 152 | Y |
| F047698 | Metagenome / Metatranscriptome | 149 | N |
| F051554 | Metagenome | 144 | Y |
| F053724 | Metagenome | 140 | Y |
| F053881 | Metagenome / Metatranscriptome | 140 | N |
| F054061 | Metagenome / Metatranscriptome | 140 | Y |
| F066219 | Metagenome / Metatranscriptome | 127 | Y |
| F067453 | Metagenome | 125 | Y |
| F069433 | Metagenome / Metatranscriptome | 124 | N |
| F069913 | Metagenome / Metatranscriptome | 123 | Y |
| F070092 | Metagenome | 123 | N |
| F070633 | Metagenome / Metatranscriptome | 123 | N |
| F071210 | Metagenome / Metatranscriptome | 122 | N |
| F071272 | Metagenome / Metatranscriptome | 122 | N |
| F072819 | Metagenome | 121 | N |
| F076867 | Metagenome | 117 | N |
| F080801 | Metagenome | 114 | Y |
| F080820 | Metagenome / Metatranscriptome | 114 | Y |
| F086459 | Metagenome | 110 | Y |
| F098918 | Metagenome | 103 | Y |
| F099327 | Metagenome | 103 | Y |
| F103328 | Metagenome / Metatranscriptome | 101 | N |
| F103499 | Metagenome / Metatranscriptome | 101 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0255812_10011594 | All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica | 3956 | Open in IMG/M |
| Ga0255812_10023071 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division CPR1 → candidate division CPR1 bacterium ADurb.Bin160 | 625 | Open in IMG/M |
| Ga0255812_10038387 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 10257 | Open in IMG/M |
| Ga0255812_10077340 | All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica | 2248 | Open in IMG/M |
| Ga0255812_10097466 | All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon | 783 | Open in IMG/M |
| Ga0255812_10100136 | All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae → Candidatus Anammoximicrobium → unclassified Candidatus Anammoximicrobium → Candidatus Anammoximicrobium sp. | 4218 | Open in IMG/M |
| Ga0255812_10124951 | All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → Candidatus Velamenicoccus → Candidatus Velamenicoccus archaeovorus | 2472 | Open in IMG/M |
| Ga0255812_10134916 | Not Available | 1239 | Open in IMG/M |
| Ga0255812_10153404 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales | 884 | Open in IMG/M |
| Ga0255812_10166398 | All Organisms → cellular organisms → Bacteria | 3987 | Open in IMG/M |
| Ga0255812_10175781 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → unclassified Ignavibacteria → Ignavibacteria bacterium | 1196 | Open in IMG/M |
| Ga0255812_10210070 | All Organisms → cellular organisms → Bacteria | 592 | Open in IMG/M |
| Ga0255812_10230150 | All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon ADurb.Bin009 | 1795 | Open in IMG/M |
| Ga0255812_10246848 | Not Available | 1296 | Open in IMG/M |
| Ga0255812_10317601 | All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Candidatus Methanofastidiosa → unclassified Candidatus Methanofastidiosa → Candidatus Methanofastidiosa archaeon | 2125 | Open in IMG/M |
| Ga0255812_10318128 | Not Available | 881 | Open in IMG/M |
| Ga0255812_10416537 | Not Available | 1013 | Open in IMG/M |
| Ga0255812_10460319 | Not Available | 670 | Open in IMG/M |
| Ga0255812_10461840 | All Organisms → cellular organisms → Bacteria | 988 | Open in IMG/M |
| Ga0255812_10480173 | Not Available | 2282 | Open in IMG/M |
| Ga0255812_10562970 | Not Available | 883 | Open in IMG/M |
| Ga0255812_10609061 | Not Available | 1844 | Open in IMG/M |
| Ga0255812_10613846 | All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → Candidatus Velamenicoccus → Candidatus Velamenicoccus archaeovorus | 679 | Open in IMG/M |
| Ga0255812_10643215 | Not Available | 906 | Open in IMG/M |
| Ga0255812_10710864 | Not Available | 662 | Open in IMG/M |
| Ga0255812_10763383 | All Organisms → cellular organisms → Bacteria | 3184 | Open in IMG/M |
| Ga0255812_10797444 | All Organisms → cellular organisms → Bacteria | 2091 | Open in IMG/M |
| Ga0255812_10819067 | Not Available | 1249 | Open in IMG/M |
| Ga0255812_10836311 | Not Available | 837 | Open in IMG/M |
| Ga0255812_10838425 | Not Available | 2014 | Open in IMG/M |
| Ga0255812_10856889 | Not Available | 3056 | Open in IMG/M |
| Ga0255812_10914163 | Not Available | 615 | Open in IMG/M |
| Ga0255812_10937986 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium | 1063 | Open in IMG/M |
| Ga0255812_10969483 | Not Available | 2055 | Open in IMG/M |
| Ga0255812_10997421 | Not Available | 2738 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0255812_10011594 | Ga0255812_100115944 | F076867 | MDEKNRNLVEIAKKKRYIALVEKLGRGSLSSKELKELEEFEKSEQRPAGVIDGTVDLPTLCVYLEKSPRMIRRYVQQGMPVFRDAVGEIARFKVGDVFKWFYKKQGSEEDNGKDYWDKEYRKNRAKLSEIELKQKEGEVIPFEDHVSIVKNQIRGIKAGFLRLPKQIAP |
| Ga0255812_10023071 | Ga0255812_100230711 | F071210 | MGLGGLNMKEKRWLGTQKYEIHCFYCGGFHITGNCPQIVKAMKGWKYDRSCPETGHIKIVPNGDEYPTVLAFNGYHYRVVGLWGIPGRLLWLELERFYGDTIVAATFCPDELMEMDLGMSDDEQLSAWLGGLPFLSVSPSEFNGSEAEVEVKTTTGESL |
| Ga0255812_10038387 | Ga0255812_100383879 | F098918 | PNYTNREFMNALIIFQTALMDKMWDNQDFDKMEMQDRENMAVQCGLDLRKLIHTYTGLDTHKIEEFL |
| Ga0255812_10077340 | Ga0255812_100773401 | F069433 | MAHKLPPKQCSSNTPAWTDPVLTDLSTKVRKVHIDELRSFLNTEFVRRGLTQASFTDPTITALVTEIRKVHVDQLRTELAACKSGRGESGYCPQDSSGCMDFTDPTITALSTEVRGVHFREMTQKVQALMTGCICETEQCQYCADCGYHYTTCSHAGVACDDHKYSECHHSINHYWMCARINLPTATEHPYNSSNPPVAWDGYVPWDWCVYTPPGLNWGTCEYSGGHNHSAWNCKC |
| Ga0255812_10097466 | Ga0255812_100974661 | F051554 | MTFQLKYYVPFKAAEGINTDLALKEGILPIEGTAIDTSVNANKWQVPPEDLDFFTASLKGAQLRIDHAESVLSIVGKVPEAIRSGNQVFFQAEVGEPSIIPKILRGYVNHVSVQVDSDDTECSVCGKQTRIEGILTHLCSGAWEIVHKPRVRELSIVASPAYKNTAFHPVGFAAAMALSQLSRGNKDVGS |
| Ga0255812_10100136 | Ga0255812_101001364 | F067453 | MITRSLGIAPGVPWGGPLPGGGYEGKTKRLDRAVQRFAEWLHRRIAGPVQVRFNSHRLSGGAFVYPDAAPDARITFDAPEIGLGARLVTPASVQRRRDRAWNKGEGSSLPALEWEDCWTERTPLSYSVLVYPQYLRDPGNLGEHKPGDGFGYWSVATPQQAYRLVRQLVSFPVVR |
| Ga0255812_10124951 | Ga0255812_101249512 | F072819 | MEMFQDQAKAQEVSFRIARLEGENAISELVNWCRNNLDELTVQCFTHKRFMSLQTLVDVLCEVYRDLGVEGDKGNVSVFVLFLAGKHRDKIYASHVVDLNDTHRQILRDKLGLDIEEIEPGLSKLDWRTDAGI |
| Ga0255812_10134916 | Ga0255812_101349162 | F047698 | MQQATAIVGVLIGFLILTQIGIFVCDAMIEASSVNESSQLYEAQTEAINTFVQCLSIVRILLIVAIVAVVFQYLQGAGLIPGFGGPRQGGY |
| Ga0255812_10153404 | Ga0255812_101534042 | F069913 | MTLEEYTQLERDFSTSETDIKTFLGIKGVSIHQYYYWKRKSRDLQEASSSTEGQFLPLNVISGGSINPGKRGKNLKHPLITQGEIEIELRTPSGSELRIRGVMDSIMVSTIIASSSVRRN |
| Ga0255812_10166398 | Ga0255812_101663984 | F008824 | MYQISVYSIAPKLWRWELRCGGALLRCGTAPTKVAAEREASLILN |
| Ga0255812_10175781 | Ga0255812_101757812 | F022996 | METIKFNISKIKSDIKILVELQKFYKNQRKTETLVGDRQMHAGEAAWKHRVNREKLRLMYAAYGQARGKSYSQIESQYPEDQHPLKAFQSGIENILCEYLQEVEVA |
| Ga0255812_10210070 | Ga0255812_102100701 | F023249 | PLSQRLEAKMGGNKFKANTVVAIKLARAVYFMLKNKTVFDPSRLVAALAKN |
| Ga0255812_10230150 | Ga0255812_102301502 | F018746 | MPPRSEALNDFEKAVLQAIEQSPEHTIVASDIVREFAHRSPRTSCIARIETMAREGKVRISRFAGRILVHSPSEA |
| Ga0255812_10246848 | Ga0255812_102468483 | F067453 | MITRSLGISPGVPWGGPLPGGGYEGKTKRLDRAVQRFAEWLPARLAGPVQVRFNSHRLSGGAFVYPGLVPEAPVTFDTPEIGLGARLVTPESVERRRDGAWKKGDGYSLPALEWEDCWTERTPLAYNVLIYPEFLRDPANLGEERPGSRFGYWAADTPQEAYRLLKRLVNFSMRLTTA |
| Ga0255812_10254606 | Ga0255812_102546061 | F103499 | HDRIAMEGCVCETCDTKGCHRPATWEIECRGAGVSGRLIYSCDEHCPDPAILSPQDEMRRLVEE |
| Ga0255812_10317601 | Ga0255812_103176012 | F070633 | VLDVSHSNSYDGFTYSVRQHIPLGPKRCASSYNLVVVPLSDGIMTSIERENFNIAMDTEGRLILTRKDRKVQLVFDYGSGFMTGVLGGVLYETFEIPKKEETDYHG |
| Ga0255812_10317601 | Ga0255812_103176013 | F053881 | MKAISKISKDSLGEKEGKLYSKIYRHIIQNFEIDEIAADQIAMAIVNQKCILLPRLLSGVDVDISLASESIRKWLSEYRLTPKSKEKDKEVTINLSAIIEEIHREREDKS |
| Ga0255812_10318128 | Ga0255812_103181282 | F041155 | RAESVQVGVHRGLRADGDMSTVGFGLSALLSLGRLNLVESII |
| Ga0255812_10416537 | Ga0255812_104165372 | F005744 | MDDETFEIIKAGAPDAPPEQALYRIQQTYPDGSGGRLNVDWDGLRRLHGLIHDRITMEGCVCETCDTKGCHRPATWEIECRGAGVSGRLIYSCDEHCPDPAILSPQDEMRRLVEE |
| Ga0255812_10460319 | Ga0255812_104603192 | F053724 | MREIRVLVRLQVEECEPDAKFDREMMEDAAVEAVENVMRHATGVGFPHTYEEELSVCFVDAVLYEEPGDDDLDEE |
| Ga0255812_10461840 | Ga0255812_104618401 | F030486 | MRHNVRRYVALAQSRGGARFCTRGAMQDYAFITLF |
| Ga0255812_10480173 | Ga0255812_104801732 | F099327 | MATEGFFQGTSGEEISLLVDGVKIMALQNLSWKASQSKSPIRGAGYRKPHAMGRAFKEYEVDFEVKELNKAVIEEGVNSRRSREVQIKTFKIGDQEFSDLLDLRNCTILIVYPPKNNATRIIRFLGFEFTDVEGGFSIDDESVGRKLSGIALDAEGMV |
| Ga0255812_10562970 | Ga0255812_105629702 | F086459 | MIYAKDRILSELDSAGAQLASLAADLKASRAVLQARLKRPPPFMPLEEYDCHFANAFTHIEKAKMAVRAMHPVCHQADFLKKKTEKKGHRQ |
| Ga0255812_10609061 | Ga0255812_106090613 | F103328 | MFKKDDGAIDMVSLILTVVIAAVTMMVGLVVVANMESSMPDISGSALSTSLTNVMENTGTAFNFLALGLFVLAAVFIIGIVAGVLGGGQG |
| Ga0255812_10613846 | Ga0255812_106138462 | F072819 | GTAMCRGIGACIRRPDPTGDRVSIQADMIIRRGIANVTLIHGEDMLQDQEKADKASFKAALLENENTVKELIYFCRNNLNDLTVQCFTHKRFMSVQAFIDALRLVYQELGVEGDKGNVSDFVLFVAGEHRDNVYASHVCAITDEHRQVFAVRLGMDIEEIEANLSKLTWRIDGGI |
| Ga0255812_10643215 | Ga0255812_106432152 | F029922 | LEETIGFMEKCQTGILPLLSREELYSFGIIELSEMIMSIEHAISYTEGYRFLFLCFGSEETSDKAKAVMKGLEDYLFLVKDVYRFKVTEKKKRENFLKGVNA |
| Ga0255812_10710864 | Ga0255812_107108641 | F053724 | MREIRVLVTLQVDECEPDAKIDRETMQDAAVEAVENAVRFAYDNGFSHAYTDELCIGFVDAVLYEEDDEDDLGEE |
| Ga0255812_10763383 | Ga0255812_107633831 | F041155 | DIDDRAESVQVGVHRGLRADGDMSTVGFGLSALLSLGRLNLVESII |
| Ga0255812_10785887 | Ga0255812_107858877 | F066219 | LEANMKKVFLVLLILCIGCLIHANIVEFFESIPPVLRYAVGTVITVYALSWAYSWFFDPIIVVADTKYGAFNFGPFIVVEPCIWYSNDVEWRNTVLNHEYTHYVQHAVYGPILSVTYPILALYSNIKSGNQWDDNYWEIQAMQAPDTAPSWKPLAVWVW |
| Ga0255812_10797444 | Ga0255812_107974443 | F080801 | MADEVQIPELVMKTTKSQFRLRCHAIAWTKEYGGRLKMQRRHGQELPGMLLLSITGPDTAVKSIRATLYQPDVEAEFVLEGGDESQQMVKARIGCDGGPFVYGAAMAKLAPGVIHMVALAKIPGLMPNMSDDHLWAELTSPRYTTPLLRSWIP |
| Ga0255812_10819067 | Ga0255812_108190671 | F070092 | MAINDRLKPVMELLETNRQKIDLMISQGMASDLAIEKRKKELYDEVMAAKEKAFKDELADLEGEIRKIEDSYREPKKDPTTKLLEFEQIKAKIRSTPSKELKELTHKFQNTGAIPGIPWERPDHVDVLVAELRNRGLDEEADLTWDYAYNKLKVDRPWENNPLYKQLKSQHNKVSVLAGFKDMLKYLDGTNNAVYISETLKYKEE |
| Ga0255812_10836311 | Ga0255812_108363112 | F026449 | PASASASNSISKSMMISRRQHPLPPPAGDSGDEAYYPYVEEADDDANKDSA |
| Ga0255812_10838425 | Ga0255812_108384251 | F000769 | MRLTYRPLELERLQGFFDARAELSSGLDPPPGVVEAGCLQRAWDRFLTRRDVLKNAFGQLLPSELHTGQSVWSELRRGVGSTEQMLRFLAQSCKRSLLGDYACLHPAP |
| Ga0255812_10856889 | Ga0255812_108568894 | F054061 | MDDETFEIIKAGAPDAPPEQALYRIQQTYPDGSGGRLNIDWEGLLWLHELIHDRIALEGYVCETCDTKGCHRPATWEIECRGVGVSGRPI |
| Ga0255812_10914163 | Ga0255812_109141631 | F080820 | GPFPFLRGRFSGRLGAFGATRGLCTTRRFAMDGKQKDARYERWLARAAAAYERMFCDKNQKELVTLTEREEMAVALSKELAAFLLEEHVAADPAKAPAEASLGCCPKCGQPGTPAPPKGGKRGAGMPERMVRTRAGDIDIRRERWKCGRCRIVFFSARRSPEVGHGRV |
| Ga0255812_10937986 | Ga0255812_109379861 | F045728 | MSLASVPRESSGQKERPLMAAQAAPAPAGDSLLVSRFLP |
| Ga0255812_10937986 | Ga0255812_109379863 | F045728 | LRTLTGRYMSLASVPRESSGQKERPLMAAQAAPAPAGDSLLVSRFLPTRE |
| Ga0255812_10969483 | Ga0255812_109694833 | F053724 | MREVRVLVTLQVDECEPDAKIDRETMQDAAVEAVENAMRFAYDNGFSHTYADELSIGFVDAVLFVAEELDGE |
| Ga0255812_10997421 | Ga0255812_109974211 | F071272 | KAAVDQLADSMAAGAWQDGPAPKDGSWILGLFHGLPYVVWYDSWEVGGEMLPDGSGSPPDGHESGWCLAGDNIQVMDQDAPEKWARIIHPDRHMPTSWDGPGDLG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |