3300023200: Activated sludge enriched bacterial communities from WWTP in Fort Collins, Colorado, USA ? LHP

Overview

Basic Information

• IMG/M Taxon OID: 3300023200
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133503 | Gp0295767 | Ga0256611
• Sample Name: Activated sludge enriched bacterial communities from WWTP in Fort Collins, Colorado, USA ? LHP
• Sequencing Status: Finished
• Sequencing Center: Argonne National Laboratory
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 174807749
• Sequencing Scaffolds: 1
• Novel Protein Genes: 3
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Rotaria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Ppcp Degradation By Aerobic Enrichment Cultures (Carbon Source)
• Type: Engineered
• Taxonomy: Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge → Ppcp Degradation By Aerobic Enrichment Cultures (Carbon Source)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Fort Collins, Colorado, USA
• Coordinates
  • Lat. (^o): 40.585258
  • Long. (^o): -105.084419
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041209	Metagenome / Metatranscriptome	160	Y
F093130	Metagenome / Metatranscriptome	106	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0256611_1182390	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Rotaria	1536

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0256611_1016824	Ga0256611_10168241	F093130	QVRVFDSRGLRSHGLLGQTWRQTTYPNAIKHVQGEVDDYVIREGDVFGDSFVYNAFN
Ga0256611_1182390	Ga0256611_11823901	F041209	MRRKLQKIGRKHVLFLDETALRLSEAATHTIVLPGEQPFVLATETTSYSARYDMIACCVGDRVLVPKIFSPAERKGADVRGINRAMLLQFVDDVLAQAVEGLDRYPLTLVLDRATVHKNVDVLRQAFADRASESIKDILLMPANAAKRMSPLDNALFHDWKEECRKHTPATKRTIVRIMSDAWNKMKPGPHYKHAGLVRGQDPYFDCPAPDVHRHGE
Ga0256611_1238091	Ga0256611_12380912	F093130	MYLNQKVHVSDKRSLRSHGLLGQTWRKATYPNAIKHVQGVVDDYVIREADVFGDSFVYNAFN