NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300023042

3300023042: Leaf litter microbial communities from Shasta-Trinity National Forest, California, United States - GEON-DECOMP-241



Overview

Basic Information
IMG/M Taxon OID3300023042 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0132900 | Gp0272143 | Ga0233340
Sample NameLeaf litter microbial communities from Shasta-Trinity National Forest, California, United States - GEON-DECOMP-241
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size117035040
Sequencing Scaffolds16
Novel Protein Genes16
Associated Families5

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available15
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Polyporales → Fibroporiaceae → Fibroporia → Fibroporia radiculosa1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil And Plant Litter Microbial Communities From Temperate Forests In California, United States
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Leaf Litter → Soil And Plant Litter Microbial Communities From Temperate Forests In California, United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)forest biomelitter layerplant litter
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationUSA: California
CoordinatesLat. (o)40.2198Long. (o)-122.9842Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011735Metagenome / Metatranscriptome287Y
F015054Metagenome257Y
F016972Metagenome / Metatranscriptome243Y
F065416Metagenome / Metatranscriptome127Y
F091248Metagenome107N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0233340_1001978Not Available1564Open in IMG/M
Ga0233340_1002998All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Polyporales → Fibroporiaceae → Fibroporia → Fibroporia radiculosa1334Open in IMG/M
Ga0233340_1003741Not Available1220Open in IMG/M
Ga0233340_1003942Not Available1195Open in IMG/M
Ga0233340_1004790Not Available1104Open in IMG/M
Ga0233340_1005179Not Available1071Open in IMG/M
Ga0233340_1005519Not Available1043Open in IMG/M
Ga0233340_1008780Not Available865Open in IMG/M
Ga0233340_1009355Not Available843Open in IMG/M
Ga0233340_1012334Not Available755Open in IMG/M
Ga0233340_1014146Not Available714Open in IMG/M
Ga0233340_1015737Not Available683Open in IMG/M
Ga0233340_1015863Not Available680Open in IMG/M
Ga0233340_1019949Not Available618Open in IMG/M
Ga0233340_1020904Not Available606Open in IMG/M
Ga0233340_1032555Not Available507Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0233340_1001978Ga0233340_10019782F015054MIGTKVEDHLDGATNFMSWKSRVLILEENDLLKLVNEKVQKLDSEEDNYHWRKSDGRARRILVDSVRDRLVPQISQKKMTKKMFRTLKE
Ga0233340_1002998Ga0233340_10029981F016972NIYLTINGLDKIPFGAKTSRYDPYELGYRRATKTFTK
Ga0233340_1003741Ga0233340_10037411F015054MIGMKVEDNLDGATNFIFWKSIVLILEENDLLKLVNEKVPEPNVEEDKSHWRKSDARARRILVDLVRDHLVPQISQKKTTRKVFKTIKE
Ga0233340_1003942Ga0233340_10039421F015054MKVEDHLDGATNFISWKSRVLILEENDLLKLVNEKVPEPDAEEDKSHWRKSDCRARRILVDSVSDHLVPQISQKKTT
Ga0233340_1004790Ga0233340_10047901F015054MIGMKVEDHLDGATNFISWKYRVLILGENDLLKFVNEKVREQDVEEDKSHWRKSDARARRILVNSVRGHLVPQIL
Ga0233340_1005179Ga0233340_10051791F015054MVGMKVEDNLDGATNFIFWKSIVLILEENDLIEVVNEKVPEPNVEEDKSHWRKSDARARRILVDSVKDHLVPQISQKKTTRKMFKTLKE
Ga0233340_1005519Ga0233340_10055191F015054MIGMEVEDHLDGATNFISCKSRVLIVEENDLLKLVNEKVPEPDAEEDKFHWRKSDCRARRILVDSVSDHLVAQISEKEDD
Ga0233340_1008780Ga0233340_10087801F065416MSPTRAGFKELGLDLVEPFQDHPRKSRWLPMRDKKKYEGAEDPIKMLLEEALEKKKNAMMDKFAQLL
Ga0233340_1009355Ga0233340_10093551F015054MIGMKVEKHHDGAINFISSKSRVLILEENDLLKFVNEKVSEPVAEEDKSHWRRSDARARRILVDLVRDHSVPQISQNKTTRKMFKTLKE
Ga0233340_1012334Ga0233340_10123341F091248MSKRQKKKAPVVEEVPQAEAETKTEYIYGDTQCVSGVEPEYQWGDVYRLITRREVPDMGLEEEPIYANIERSTLMKVATRPELFPCSEVIGWILPGVDVSTMILKDVNDQGYATYSPGYVALAYHLPEPKVFMSDDWLSNIKMDLIETMKRMMLPRKLFRPRETNEYDTVSLRAPYRFIALMLNRIFGRAHGRLFKL
Ga0233340_1014146Ga0233340_10141461F015054ENDLIKLVNEKVPEPNVEEDKFHWRKSDATARRILVDSIRDHLVPQISQKKTTRNMFKTLKE
Ga0233340_1015737Ga0233340_10157371F011735MWYGPFVISKVLEKGAYKLIDYDGIHLGQPRNGLYLKRYY
Ga0233340_1015863Ga0233340_10158631F091248TQCVTGVEPEYKWGDIYRMISRREVPDMGLEEAPIYANIEKSTIMKVATRPKLFPCSELMRWVLPHTNHNSMLLCNTQGQGYAAFSPGYVALAYHLPEPQLFLTNEWLDDLRMDLVETLKRMLLPGKIFRHRVTEDYDTASLRPTYRFIALMLNRIFGRANGRLFKFEWIPLMFFVATEGTIFNWASIVSSNLSSCVAAALEGKERRRS
Ga0233340_1019949Ga0233340_10199491F015054MIRMKLEDHLDGATNFIFWKSRVLISEENDLLKLVNEKVRELDAEEDKSHWRKSDARARRILVDSVSDHLVSQISQYAPSSLRIICYME
Ga0233340_1020904Ga0233340_10209042F015054MIGMKVEKNLYGATNFIFWKSIVLILEENDLLKLVNEKVPEPNVEEDKSRWRKSDARARRILVDSVRDHLVPQISQKKTTRKMFKALKG
Ga0233340_1032555Ga0233340_10325551F091248EYIYEDTQCVTGVEPEYKWGDIYRLISRREVPDMGLEEAPIYANIEKSAIMKVATRPELFPCSEVMKWILPHTNHDTMLICNVEGQGYAAFSPGYVALAYHLPEPQVFLSNEWLDNLRMDLVETMRRMLLPGKLYRHRATEDYDTASLRAPYRFIALMLNRIFGRANGR

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