3300023042: Leaf litter microbial communities from Shasta-Trinity National Forest, California, United States - GEON-DECOMP-241

Overview

Basic Information

• IMG/M Taxon OID: 3300023042
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0132900 | Gp0272143 | Ga0233340
• Sample Name: Leaf litter microbial communities from Shasta-Trinity National Forest, California, United States - GEON-DECOMP-241
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 117035040
• Sequencing Scaffolds: 16
• Novel Protein Genes: 16
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	15
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Polyporales → Fibroporiaceae → Fibroporia → Fibroporia radiculosa	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil And Plant Litter Microbial Communities From Temperate Forests In California, United States
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Leaf Litter → Soil And Plant Litter Microbial Communities From Temperate Forests In California, United States

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): forest biome → litter layer → plant litter
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: USA: California
• Coordinates
  • Lat. (^o): 40.2198
  • Long. (^o): -122.9842
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011735	Metagenome / Metatranscriptome	287	Y
F015054	Metagenome	257	Y
F016972	Metagenome / Metatranscriptome	243	Y
F065416	Metagenome / Metatranscriptome	127	Y
F091248	Metagenome	107	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0233340_1001978	Not Available	1564
Ga0233340_1002998	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Polyporales → Fibroporiaceae → Fibroporia → Fibroporia radiculosa	1334
Ga0233340_1003741	Not Available	1220
Ga0233340_1003942	Not Available	1195
Ga0233340_1004790	Not Available	1104
Ga0233340_1005179	Not Available	1071
Ga0233340_1005519	Not Available	1043
Ga0233340_1008780	Not Available	865
Ga0233340_1009355	Not Available	843
Ga0233340_1012334	Not Available	755
Ga0233340_1014146	Not Available	714
Ga0233340_1015737	Not Available	683
Ga0233340_1015863	Not Available	680
Ga0233340_1019949	Not Available	618
Ga0233340_1020904	Not Available	606
Ga0233340_1032555	Not Available	507

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0233340_1001978	Ga0233340_10019782	F015054	MIGTKVEDHLDGATNFMSWKSRVLILEENDLLKLVNEKVQKLDSEEDNYHWRKSDGRARRILVDSVRDRLVPQISQKKMTKKMFRTLKE
Ga0233340_1002998	Ga0233340_10029981	F016972	NIYLTINGLDKIPFGAKTSRYDPYELGYRRATKTFTK
Ga0233340_1003741	Ga0233340_10037411	F015054	MIGMKVEDNLDGATNFIFWKSIVLILEENDLLKLVNEKVPEPNVEEDKSHWRKSDARARRILVDLVRDHLVPQISQKKTTRKVFKTIKE
Ga0233340_1003942	Ga0233340_10039421	F015054	MKVEDHLDGATNFISWKSRVLILEENDLLKLVNEKVPEPDAEEDKSHWRKSDCRARRILVDSVSDHLVPQISQKKTT
Ga0233340_1004790	Ga0233340_10047901	F015054	MIGMKVEDHLDGATNFISWKYRVLILGENDLLKFVNEKVREQDVEEDKSHWRKSDARARRILVNSVRGHLVPQIL
Ga0233340_1005179	Ga0233340_10051791	F015054	MVGMKVEDNLDGATNFIFWKSIVLILEENDLIEVVNEKVPEPNVEEDKSHWRKSDARARRILVDSVKDHLVPQISQKKTTRKMFKTLKE
Ga0233340_1005519	Ga0233340_10055191	F015054	MIGMEVEDHLDGATNFISCKSRVLIVEENDLLKLVNEKVPEPDAEEDKFHWRKSDCRARRILVDSVSDHLVAQISEKEDD
Ga0233340_1008780	Ga0233340_10087801	F065416	MSPTRAGFKELGLDLVEPFQDHPRKSRWLPMRDKKKYEGAEDPIKMLLEEALEKKKNAMMDKFAQLL
Ga0233340_1009355	Ga0233340_10093551	F015054	MIGMKVEKHHDGAINFISSKSRVLILEENDLLKFVNEKVSEPVAEEDKSHWRRSDARARRILVDLVRDHSVPQISQNKTTRKMFKTLKE
Ga0233340_1012334	Ga0233340_10123341	F091248	MSKRQKKKAPVVEEVPQAEAETKTEYIYGDTQCVSGVEPEYQWGDVYRLITRREVPDMGLEEEPIYANIERSTLMKVATRPELFPCSEVIGWILPGVDVSTMILKDVNDQGYATYSPGYVALAYHLPEPKVFMSDDWLSNIKMDLIETMKRMMLPRKLFRPRETNEYDTVSLRAPYRFIALMLNRIFGRAHGRLFKL
Ga0233340_1014146	Ga0233340_10141461	F015054	ENDLIKLVNEKVPEPNVEEDKFHWRKSDATARRILVDSIRDHLVPQISQKKTTRNMFKTLKE
Ga0233340_1015737	Ga0233340_10157371	F011735	MWYGPFVISKVLEKGAYKLIDYDGIHLGQPRNGLYLKRYY
Ga0233340_1015863	Ga0233340_10158631	F091248	TQCVTGVEPEYKWGDIYRMISRREVPDMGLEEAPIYANIEKSTIMKVATRPKLFPCSELMRWVLPHTNHNSMLLCNTQGQGYAAFSPGYVALAYHLPEPQLFLTNEWLDDLRMDLVETLKRMLLPGKIFRHRVTEDYDTASLRPTYRFIALMLNRIFGRANGRLFKFEWIPLMFFVATEGTIFNWASIVSSNLSSCVAAALEGKERRRS
Ga0233340_1019949	Ga0233340_10199491	F015054	MIRMKLEDHLDGATNFIFWKSRVLISEENDLLKLVNEKVRELDAEEDKSHWRKSDARARRILVDSVSDHLVSQISQYAPSSLRIICYME
Ga0233340_1020904	Ga0233340_10209042	F015054	MIGMKVEKNLYGATNFIFWKSIVLILEENDLLKLVNEKVPEPNVEEDKSRWRKSDARARRILVDSVRDHLVPQISQKKTTRKMFKALKG
Ga0233340_1032555	Ga0233340_10325551	F091248	EYIYEDTQCVTGVEPEYKWGDIYRLISRREVPDMGLEEAPIYANIEKSAIMKVATRPELFPCSEVMKWILPHTNHDTMLICNVEGQGYAAFSPGYVALAYHLPEPQVFLSNEWLDNLRMDLVETMRRMLLPGKLYRHRATEDYDTASLRAPYRFIALMLNRIFGRANGR