Basic Information | |
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IMG/M Taxon OID | 3300023042 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0132900 | Gp0272143 | Ga0233340 |
Sample Name | Leaf litter microbial communities from Shasta-Trinity National Forest, California, United States - GEON-DECOMP-241 |
Sequencing Status | Permanent Draft |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 117035040 |
Sequencing Scaffolds | 16 |
Novel Protein Genes | 16 |
Associated Families | 5 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
Not Available | 15 |
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Polyporales → Fibroporiaceae → Fibroporia → Fibroporia radiculosa | 1 |
Ecosystem Assignment (GOLD) | |
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Name | Soil And Plant Litter Microbial Communities From Temperate Forests In California, United States |
Type | Environmental |
Taxonomy | Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Leaf Litter → Soil And Plant Litter Microbial Communities From Temperate Forests In California, United States |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | forest biome → litter layer → plant litter |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
Location Information | ||||||||
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Location | USA: California | |||||||
Coordinates | Lat. (o) | 40.2198 | Long. (o) | -122.9842 | Alt. (m) | N/A | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F011735 | Metagenome / Metatranscriptome | 287 | Y |
F015054 | Metagenome | 257 | Y |
F016972 | Metagenome / Metatranscriptome | 243 | Y |
F065416 | Metagenome / Metatranscriptome | 127 | Y |
F091248 | Metagenome | 107 | N |
Scaffold | Taxonomy | Length | IMG/M Link |
---|---|---|---|
Ga0233340_1001978 | Not Available | 1564 | Open in IMG/M |
Ga0233340_1002998 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Polyporales → Fibroporiaceae → Fibroporia → Fibroporia radiculosa | 1334 | Open in IMG/M |
Ga0233340_1003741 | Not Available | 1220 | Open in IMG/M |
Ga0233340_1003942 | Not Available | 1195 | Open in IMG/M |
Ga0233340_1004790 | Not Available | 1104 | Open in IMG/M |
Ga0233340_1005179 | Not Available | 1071 | Open in IMG/M |
Ga0233340_1005519 | Not Available | 1043 | Open in IMG/M |
Ga0233340_1008780 | Not Available | 865 | Open in IMG/M |
Ga0233340_1009355 | Not Available | 843 | Open in IMG/M |
Ga0233340_1012334 | Not Available | 755 | Open in IMG/M |
Ga0233340_1014146 | Not Available | 714 | Open in IMG/M |
Ga0233340_1015737 | Not Available | 683 | Open in IMG/M |
Ga0233340_1015863 | Not Available | 680 | Open in IMG/M |
Ga0233340_1019949 | Not Available | 618 | Open in IMG/M |
Ga0233340_1020904 | Not Available | 606 | Open in IMG/M |
Ga0233340_1032555 | Not Available | 507 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
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Ga0233340_1001978 | Ga0233340_10019782 | F015054 | MIGTKVEDHLDGATNFMSWKSRVLILEENDLLKLVNEKVQKLDSEEDNYHWRKSDGRARRILVDSVRDRLVPQISQKKMTKKMFRTLKE |
Ga0233340_1002998 | Ga0233340_10029981 | F016972 | NIYLTINGLDKIPFGAKTSRYDPYELGYRRATKTFTK |
Ga0233340_1003741 | Ga0233340_10037411 | F015054 | MIGMKVEDNLDGATNFIFWKSIVLILEENDLLKLVNEKVPEPNVEEDKSHWRKSDARARRILVDLVRDHLVPQISQKKTTRKVFKTIKE |
Ga0233340_1003942 | Ga0233340_10039421 | F015054 | MKVEDHLDGATNFISWKSRVLILEENDLLKLVNEKVPEPDAEEDKSHWRKSDCRARRILVDSVSDHLVPQISQKKTT |
Ga0233340_1004790 | Ga0233340_10047901 | F015054 | MIGMKVEDHLDGATNFISWKYRVLILGENDLLKFVNEKVREQDVEEDKSHWRKSDARARRILVNSVRGHLVPQIL |
Ga0233340_1005179 | Ga0233340_10051791 | F015054 | MVGMKVEDNLDGATNFIFWKSIVLILEENDLIEVVNEKVPEPNVEEDKSHWRKSDARARRILVDSVKDHLVPQISQKKTTRKMFKTLKE |
Ga0233340_1005519 | Ga0233340_10055191 | F015054 | MIGMEVEDHLDGATNFISCKSRVLIVEENDLLKLVNEKVPEPDAEEDKFHWRKSDCRARRILVDSVSDHLVAQISEKEDD |
Ga0233340_1008780 | Ga0233340_10087801 | F065416 | MSPTRAGFKELGLDLVEPFQDHPRKSRWLPMRDKKKYEGAEDPIKMLLEEALEKKKNAMMDKFAQLL |
Ga0233340_1009355 | Ga0233340_10093551 | F015054 | MIGMKVEKHHDGAINFISSKSRVLILEENDLLKFVNEKVSEPVAEEDKSHWRRSDARARRILVDLVRDHSVPQISQNKTTRKMFKTLKE |
Ga0233340_1012334 | Ga0233340_10123341 | F091248 | MSKRQKKKAPVVEEVPQAEAETKTEYIYGDTQCVSGVEPEYQWGDVYRLITRREVPDMGLEEEPIYANIERSTLMKVATRPELFPCSEVIGWILPGVDVSTMILKDVNDQGYATYSPGYVALAYHLPEPKVFMSDDWLSNIKMDLIETMKRMMLPRKLFRPRETNEYDTVSLRAPYRFIALMLNRIFGRAHGRLFKL |
Ga0233340_1014146 | Ga0233340_10141461 | F015054 | ENDLIKLVNEKVPEPNVEEDKFHWRKSDATARRILVDSIRDHLVPQISQKKTTRNMFKTLKE |
Ga0233340_1015737 | Ga0233340_10157371 | F011735 | MWYGPFVISKVLEKGAYKLIDYDGIHLGQPRNGLYLKRYY |
Ga0233340_1015863 | Ga0233340_10158631 | F091248 | TQCVTGVEPEYKWGDIYRMISRREVPDMGLEEAPIYANIEKSTIMKVATRPKLFPCSELMRWVLPHTNHNSMLLCNTQGQGYAAFSPGYVALAYHLPEPQLFLTNEWLDDLRMDLVETLKRMLLPGKIFRHRVTEDYDTASLRPTYRFIALMLNRIFGRANGRLFKFEWIPLMFFVATEGTIFNWASIVSSNLSSCVAAALEGKERRRS |
Ga0233340_1019949 | Ga0233340_10199491 | F015054 | MIRMKLEDHLDGATNFIFWKSRVLISEENDLLKLVNEKVRELDAEEDKSHWRKSDARARRILVDSVSDHLVSQISQYAPSSLRIICYME |
Ga0233340_1020904 | Ga0233340_10209042 | F015054 | MIGMKVEKNLYGATNFIFWKSIVLILEENDLLKLVNEKVPEPNVEEDKSRWRKSDARARRILVDSVRDHLVPQISQKKTTRKMFKALKG |
Ga0233340_1032555 | Ga0233340_10325551 | F091248 | EYIYEDTQCVTGVEPEYKWGDIYRLISRREVPDMGLEEAPIYANIEKSAIMKVATRPELFPCSEVMKWILPHTNHDTMLICNVEGQGYAAFSPGYVALAYHLPEPQVFLSNEWLDNLRMDLVETMRRMLLPGKLYRHRATEDYDTASLRAPYRFIALMLNRIFGRANGR |
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