3300023036: Leaf litter microbial communities from Shasta-Trinity National Forest, California, United States - GEON-DECOMP-201

Overview

Basic Information

• IMG/M Taxon OID: 3300023036
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0132900 | Gp0272133 | Ga0233330
• Sample Name: Leaf litter microbial communities from Shasta-Trinity National Forest, California, United States - GEON-DECOMP-201
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 96942570
• Sequencing Scaffolds: 21
• Novel Protein Genes: 21
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	20
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → Lecanoromycetes → OSLEUM clade → Lecanoromycetidae → Lecanorales → Lecanorineae → Parmeliaceae → Bryoria → Bryoria tenuis	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil And Plant Litter Microbial Communities From Temperate Forests In California, United States
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Leaf Litter → Soil And Plant Litter Microbial Communities From Temperate Forests In California, United States

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): forest biome → litter layer → plant litter
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: USA: California
• Coordinates
  • Lat. (^o): 40.2526
  • Long. (^o): -123.026
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011735	Metagenome / Metatranscriptome	287	Y
F015054	Metagenome	257	Y
F045048	Metagenome / Metatranscriptome	153	Y
F065766	Metagenome / Metatranscriptome	127	Y
F091248	Metagenome	107	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0233330_1003890	Not Available	1478
Ga0233330_1006583	Not Available	1050
Ga0233330_1009157	Not Available	866
Ga0233330_1011605	Not Available	766
Ga0233330_1012629	Not Available	735
Ga0233330_1015635	Not Available	666
Ga0233330_1016344	Not Available	652
Ga0233330_1017296	Not Available	636
Ga0233330_1017757	Not Available	628
Ga0233330_1017937	Not Available	625
Ga0233330_1018931	Not Available	611
Ga0233330_1019262	Not Available	606
Ga0233330_1021431	Not Available	579
Ga0233330_1023718	Not Available	554
Ga0233330_1024131	Not Available	551
Ga0233330_1025159	Not Available	541
Ga0233330_1026985	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → Lecanoromycetes → OSLEUM clade → Lecanoromycetidae → Lecanorales → Lecanorineae → Parmeliaceae → Bryoria → Bryoria tenuis	526
Ga0233330_1028249	Not Available	517
Ga0233330_1028376	Not Available	516
Ga0233330_1029344	Not Available	509
Ga0233330_1030040	Not Available	505

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0233330_1003890	Ga0233330_10038901	F015054	MTVEDNLDGATNFISWKSRVLILEENDLLKLVNEKVPESDAEEDKSHWRKSDCRARRILVDSVSDHLVPQISQKKTTRKILKP
Ga0233330_1006583	Ga0233330_10065831	F015054	MIGMKVEDNLDGATNFIFWKSIVLILEENDLIKLVNEKVPEPNVEEDKFHWRKSDATARRILVDSVRDHLVPQISQKKTTRNMFKTLKE
Ga0233330_1009157	Ga0233330_10091571	F091248	MSKRQRKKAPAVEEVPAAEVETKIEYIYEDTQCVTGVEPEYKWGDIYRMISRREVPDMGLEEAPIYANIEKSAIMKVATRPELFPCSELMRWVLPHTNHNSMLICNVDGQGYAAFSPGYVALAYHLPEPQLFLTDRWLDDLRMDFVETLKRMLLPGKIFRHRVTEDYDTATLRPTYRFIALMLNRIFGRENGRLFKLEWVPIMFFIATEGTIFNWASIVSSNLSSW
Ga0233330_1011605	Ga0233330_10116051	F015054	MIGMKVEDNLDGATNFIFWKSIVLILEENDLLKLVNEKVAEPNVEEDKSRWRKSNARARRILVDSVRNHLVPQISQKKTTR
Ga0233330_1012629	Ga0233330_10126292	F015054	MIGMKVEDHLDGATKFIFWKSRVLILRENDLLKLVNEKVTEQDVEEDKSHWRKSDARARRILVNSVRDHLVPQILQTKTTMKMFNTLNE
Ga0233330_1015635	Ga0233330_10156351	F015054	LEENDLLKLVNEKVPKPDAEEDKSHWRKSNARARRILVDSVRDHMVLQISQKKTTTKMFKTLMG
Ga0233330_1016344	Ga0233330_10163441	F015054	MKVEDHLDAATNNISWKSRVLILEENDLLKLVKEKVPEQDVEEDMSHWRKCDARARRILVNSVRDHLVPRILQTKTTMKMFKTLKE
Ga0233330_1017296	Ga0233330_10172961	F091248	TKTEYIYEDTQCVSGVEPEYKWDEIYRLISRREVPDMGLEEEPIYANIEKSAIMKVATRPELFPCSDVMRWILPHTNNNTMLIGNVEGQGYAAFSPGYVALAYHLPKPQIFLSNDWLDNLRMDLVETLKRMLLPGKLYRHRATEDYDTASLRAPYRFVALMLNRIFGRASGRLFKFEWVPIMFHVATQGTIFNWASLVSSSLSSCVAAALG
Ga0233330_1017757	Ga0233330_10177571	F015054	MIGMNVEDHLDGATKFISWKSRVLLILEENDLLKLVNEKVPEPEAEEDKSHRRSDARARRIMVDSVRDHLVPQISQKKTSRKMFKILKE
Ga0233330_1017937	Ga0233330_10179371	F091248	GLEEEHIYTNIEKSAIMKVATRPEMFPCAELMRWILPHTNHGSMLICNVGGQGYASFSPGYVSLAYHLPEPQVFLSNEWLDSLRMDLIDTMRKMLLPGKLFRHRVTEDYDTATLRPPYRFIALMLNRIFGRANGKLFKFEWIPLMFYVATEGTIFNWSGLVSSSLSSCIAAAKGGVQQRKSEFYMSSILIDCIMCHQPFPGLKCVWDR
Ga0233330_1018931	Ga0233330_10189311	F015054	MIGLKAEDHLDRATNFISWKSRVLILEENDLLKLVNEKVPEPDAEDDKSHWRKSDARARRILVDSVRDHLVSQISQKKTSRKMFKTLKEL
Ga0233330_1019262	Ga0233330_10192621	F015054	MIGMKVEDHLDGATNFISWKYRVLILGENDLLKFVNEKVREQDVEEDKSHWRKSDARARRILVNSVRDHLVRQILQTKTTM
Ga0233330_1021431	Ga0233330_10214311	F091248	TMSKRQKKKAPAVEEQTAIEVVPQKEYIYEDTQCISGIEPEYKWGEIYRLISRREVPDTGLEEEPIYANIEKSAIMKVATRPELFPCSDVMRWILPHTNNNTMLMGNVEGQGYAAFSPGYVALAYHLPEPQVFLSNDWLDNLRMDLVETLRRMLLPGKLYRHRATEDYDTASLRDPYRFIALMLNWIFGRAN
Ga0233330_1023718	Ga0233330_10237181	F015054	LESIVLILEENDLLKLVNEKVSEPDAEEDKSHSRKSDTRARKILVDSVRDHMVSQISQKKTTREMIKSLKE
Ga0233330_1024131	Ga0233330_10241311	F011735	MWLGSYIMSKVLKKGAYELTNFDGNNLPEHRNGLYLKKYYA
Ga0233330_1025159	Ga0233330_10251591	F015054	MKVEDYFDGATNFISWKFRVLILEEIDFLKLVNEKVPKPNAEEDKSHWRKSDARARRILVDSIRDDLVLQISQKKTTREMFKTLKE
Ga0233330_1026985	Ga0233330_10269851	F045048	MVFNFRQTPDDNNITVLSKGNSNGLIASIPIGGHXAPNSTVGDNALXKKAQKIAKKNNASDTINKATPIFNPLCTANVXLPK
Ga0233330_1028249	Ga0233330_10282491	F015054	MIGMKIEDHLDGAINFISWNSSVLILEENVLLKFLNEKVRKQDAKEDKSHWRKSDARARRIFVDSVRDHLVPQISQK
Ga0233330_1028376	Ga0233330_10283761	F015054	MIGMKVEKHHDGAINFISSKSRVLILEENDLLKFVNEKVPEPVAEEDKSRWRRSDARARRILVDLVRDHLVPQISQNKTTRKMFKTLKE
Ga0233330_1029344	Ga0233330_10293441	F015054	MIGTKVEDHLDGATNFMSWKSRVLILEENDLLKLVNEKVQKLDSEEDNYHWRKSDARARRILVDSVRDHLVPQISQKKMTKKMFRTLKE
Ga0233330_1030040	Ga0233330_10300401	F065766	MGEEKKVEDAEDPIKMFLEEALEKQRNAMMDNFTQIL