NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300023016

3300023016: Leaf litter microbial communities from Shasta-Trinity National Forest, California, United States - GEON-DECOMP-213



Overview

Basic Information
IMG/M Taxon OID3300023016 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0132900 | Gp0272136 | Ga0233333
Sample NameLeaf litter microbial communities from Shasta-Trinity National Forest, California, United States - GEON-DECOMP-213
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size56258482
Sequencing Scaffolds15
Novel Protein Genes15
Associated Families3

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available15

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil And Plant Litter Microbial Communities From Temperate Forests In California, United States
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Leaf Litter → Soil And Plant Litter Microbial Communities From Temperate Forests In California, United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)forest biome → litter layer → plant litter
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationUSA: California
CoordinatesLat. (o)40.2526Long. (o)-123.026Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015054Metagenome257Y
F065766Metagenome / Metatranscriptome127Y
F091248Metagenome107N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0233333_1000364Not Available2699Open in IMG/M
Ga0233333_1001625Not Available1441Open in IMG/M
Ga0233333_1001822Not Available1373Open in IMG/M
Ga0233333_1002140Not Available1284Open in IMG/M
Ga0233333_1002224Not Available1265Open in IMG/M
Ga0233333_1002324Not Available1245Open in IMG/M
Ga0233333_1002785Not Available1169Open in IMG/M
Ga0233333_1003058Not Available1122Open in IMG/M
Ga0233333_1005253Not Available888Open in IMG/M
Ga0233333_1008727Not Available714Open in IMG/M
Ga0233333_1008730Not Available714Open in IMG/M
Ga0233333_1011270Not Available638Open in IMG/M
Ga0233333_1013310Not Available592Open in IMG/M
Ga0233333_1013733Not Available584Open in IMG/M
Ga0233333_1018280Not Available512Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0233333_1000364Ga0233333_10003642F065766MAEEKRDDGAGDPIKSLLEEALERQRNEMMDSFAQILRRMPT
Ga0233333_1001625Ga0233333_10016253F015054MIGMKVEDNLDGATNFIFWMSIVLILEENDLLNLVNEKVPEPNVEEDKFHWRKSDARARRILVDSVRYHLVPQMSQRRRLGRCSKP
Ga0233333_1001822Ga0233333_10018222F015054MIGMKVEDHLDGATNFISWKSRVLILGENDLLKLVNEKVLEQDVEEDKSHWRKSDARARRILVNSVRDHLVPQILQTKTTMKMFKTLKE
Ga0233333_1002140Ga0233333_10021401F015054MIGMKVEDHLDGATNFISWKSRVLILGENDLLKLVNEKVTEQDVEEDKSDWRKSDARARRILVNSVRDHLVHQILQTKATMKMFNTLKE
Ga0233333_1002224Ga0233333_10022241F015054MIGMKVEDNLDGATNFIFWKSIVLILEENDLLKLANEKVPEPNVEEDKSHWRKSDARARRILVDSVNDHLVPQMSQNKTTMKMFKTLNE
Ga0233333_1002324Ga0233333_10023242F015054MIGMKVEDHLDGATNFISWKFRVLILGENDPLKLVNEKVQEQNVEEDKSHWRKSDARARRILVNSVRDHFVPQILQTKTTMKMFKTLKE
Ga0233333_1002785Ga0233333_10027851F091248MSKRQKKKAPAVEEVPAAEVETKTEYIYEDTQCVTGVEPEYKWGDIYRMISRREVPDTGLEEAPIYTNIEKSAIMKVATRPELFPCPEVMRWVLPNTNHNSMLMCNVEGQGYAAFSPGYVALAYHLPEPQLFLTNEWLDNLRMDFVETMKRMLLPGKLYRHRATEEYDTASLRPTYRFIALMLNRIFGRANGRLFKFEWIPLMFYVATEGTIFNWASIVSSSLSSCVAAALEGEARKRSEFYMSSILIDCILCHQPFPGLQ
Ga0233333_1003058Ga0233333_10030581F091248MSKRQKKKAPAVEEQPEIEVVTKTEYIYEDTQCISSVEPEYKWGDIYRLISHREIPDMGLEEEPIYANIERSAIMKVATRPELFPCSEVIIWILPHTNTATMLIGNVEGQGYAAFSPGYVALAYHLPEPQIFISDAWLDNIRMDLIETLKRMLLPGKLYRHRETGEYDTTNLRAPYRFIALMLNRIFGRAHGRLFKFEWIPIMFHIATQGTVFNWASLVSSSLSSCVAIALGGESKKKSEFYMSSILVDCILCNQP
Ga0233333_1005253Ga0233333_10052532F015054DGATNFISWKSRVLILAENDLLKLVNEKVLEQDVEEDKSHWRKSDARTRRSLVNTVRDHMGPQILQTKTTMKMFKILKE
Ga0233333_1008727Ga0233333_10087271F015054MIGMNVEDHLDGATNFISWKSRVLILEENDLLKLVNEKVPEPDAEEDKSHWRKSDCRARRILVDSVSDHLVPQISQKKTTRKILKP
Ga0233333_1008730Ga0233333_10087301F015054LEENDLLKLVNERVPEPDAEEDKFNWRKSNARARRILIDSVRDHMAPQISQKKTTMNMFKTLKE
Ga0233333_1011270Ga0233333_10112701F015054MIGMRVEDHLDGATNFISWKSRVLILGENDRLKLVNEKVPEQDVEEDKSHWRKNDARARRILINPLRDHSVPQILQTKTTMKMFKTLKE
Ga0233333_1013310Ga0233333_10133101F015054MIGMKVEDHLDGATNFISWKSRVLILEENDLLKLVNEKVPESDAEEDKSHWRKSDCRARRILVDSVSDHLVPQISQKKTTRKILKP
Ga0233333_1013733Ga0233333_10137331F015054MKVEDHLDRATNFISWKFRVLILDENDLLKLVNQKVQEPDAEEDESHWRKSDARARKIFVDSVRDHFVPXLLMAKLY
Ga0233333_1018280Ga0233333_10182801F091248VEEQTAIEADLPTEYIYEDTQCVTGLDPEYKWGDIHRMISRREVPDMGLEEEHIYANIEKSAIMKVATRPEMFPCAELMRWILPHTNHGSMLICNVEGQGYASFSPGYVALAYHFPEPQVFLSNEWLDNLRMDLIETMRKMLLPGKLYRHRATEDYDTATLRPPYRFIAL
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