3300022930: Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L209-509C-1

Overview

Basic Information

• IMG/M Taxon OID: 3300022930
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0095510 | Gp0290986 | Ga0247816
• Sample Name: Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L209-509C-1
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 832423818
• Sequencing Scaffolds: 7
• Novel Protein Genes: 7
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Aquabacterium → unclassified Aquabacterium → Aquabacterium sp.	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Rotaria	2
Not Available	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → agricultural field → plant litter
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.3
  • Long. (^o): -89.38
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013427	Metagenome / Metatranscriptome	271	Y
F038463	Metagenome / Metatranscriptome	166	Y
F041209	Metagenome / Metatranscriptome	160	Y
F051903	Metagenome / Metatranscriptome	143	Y
F060965	Metagenome / Metatranscriptome	132	Y
F086339	Metagenome / Metatranscriptome	111	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0247816_10002806	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Aquabacterium → unclassified Aquabacterium → Aquabacterium sp.	8034
Ga0247816_10053735	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Rotaria	1745
Ga0247816_10175494	Not Available	904
Ga0247816_10238648	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Rotaria	752
Ga0247816_10294639	Not Available	662
Ga0247816_10380108	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	565
Ga0247816_10451241	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae	507

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0247816_10002806	Ga0247816_100028064	F086339	MAKLKGVASSNKMMPHMNTYGGQENPGYKPPTGNAGSMARGLYSHKTNPLSTPKKGSEIGAGYGNADRMKAMRAKDEQAKKENLRGMPC
Ga0247816_10053735	Ga0247816_100537352	F041209	VSAGLCEEIADLRRKLRRVGPNHVLFLDETALRLSEAPTHTLVLPGHQPLVLATETTSYSSRYDMIACCAGDRVLVPKIFTPKERKGADVKGINGPMLKQFINDILAQAVEGLDRYPLTLVLDKAAIHKNTDALLQEFRDRGSESIAEIVLMPPNAAKRMSPLDNALFHDWKEACRIQCPVTKRTIQRVMSDAWNRMSPTPHYQHCGLTGRQDLYFDCPDPIGHGHGR
Ga0247816_10175494	Ga0247816_101754941	F051903	WVPSVSAEMCEQIAKVRRRVQRIGKDKVLFLDETYKRVGDAATNTIVLPGEPSFIASDETSKYAPRFDMIACCSGKEVLPPIIYAPKERGKGINAAMLHEYIRQLLGQAAGALDRYPLILVLDRASIHSEEKMLQEFHDWGCQELKEIVKMPSAAAKRLSPLDNSLFNLWRQRVLADGPLTKSNIKQRMSDAWNSITTADLLPQYRNCGLMYGQDVYFDCPNPAAHGHAR
Ga0247816_10238648	Ga0247816_102386481	F051903	TDRTIVLPGEPSTIETSATTHYAPRYDMIACCTSKEVMPPMIYAPKERGKGIDTEMLLQYIRNLLAQSAGALDRYPLFLMLDKSTIHNEGKIIETFHDWGCQELVEVIKMPTAAAKRLSPLDNSLFNVWRQRALNGPPLTRTNIKQRMSDAWNSITERDLLPQYRHCGLMRHQDVYFDCPNPATHRHGS
Ga0247816_10294639	Ga0247816_102946392	F038463	MELPKRVFNSPLIEYVNFQDGSHVNLIRLLKPYANGNAYAVHETTKSPFCSSGMYKTIEQAQEKFNLMVRNGSKESSVISRGVVA
Ga0247816_10380108	Ga0247816_103801082	F013427	MDLAGTCDLAVWCKLLRDKGWTGPRIAREIAKSEGYVNNLIRVVDRASPKVMLRWKLEQDARDDVGHVCATDWLVQICLLPHDVQDRELAQRLTSYAPVPG
Ga0247816_10451241	Ga0247816_104512411	F060965	VIPQINNVKLTLALLMTRFDANYSNNALALDDLTVAADPLN