3300022743: Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 2-17_Aug_MG

Overview

Basic Information

• IMG/M Taxon OID: 3300022743
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0131212 | Gp0267123 | Ga0228699
• Sample Name: Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 2-17_Aug_MG
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 287764015
• Sequencing Scaffolds: 17
• Novel Protein Genes: 18
• Associated Families: 14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	5
Not Available	9
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater biome → bayou → fresh water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: USA: Georgia
• Coordinates
  • Lat. (^o): 33.9363
  • Long. (^o): -83.5573
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007510	Metagenome / Metatranscriptome	349	Y
F015606	Metagenome / Metatranscriptome	253	Y
F018683	Metagenome / Metatranscriptome	233	Y
F019483	Metagenome / Metatranscriptome	229	Y
F025021	Metagenome / Metatranscriptome	203	Y
F031788	Metagenome / Metatranscriptome	181	Y
F050213	Metagenome / Metatranscriptome	145	Y
F054814	Metagenome / Metatranscriptome	139	Y
F066582	Metagenome	126	Y
F078424	Metagenome / Metatranscriptome	116	Y
F078934	Metagenome / Metatranscriptome	116	Y
F089842	Metagenome	108	Y
F099158	Metagenome	103	Y
F101135	Metagenome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0228699_1000471	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	29823
Ga0228699_1000687	Not Available	22552
Ga0228699_1001868	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	9673
Ga0228699_1001886	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	9583
Ga0228699_1002133	Not Available	8624
Ga0228699_1002134	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	8623
Ga0228699_1006807	Not Available	3336
Ga0228699_1020433	All Organisms → Viruses → Predicted Viral	1556
Ga0228699_1025227	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	1346
Ga0228699_1029053	Not Available	1226
Ga0228699_1034415	All Organisms → Viruses → Predicted Viral	1097
Ga0228699_1036190	Not Available	1061
Ga0228699_1040251	Not Available	989
Ga0228699_1056150	Not Available	795
Ga0228699_1066426	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	712
Ga0228699_1111668	Not Available	512
Ga0228699_1112508	Not Available	509

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0228699_1000471	Ga0228699_100047129	F054814	MAEVKLTGLYKVTVTEFERGWGQRVDPNDTKFFTTREEAEKYAAHWEEGGTPDYFWRASIERVN
Ga0228699_1000687	Ga0228699_100068725	F018683	MTIKRFNQNQKFRIIVGDACFYATANQIRYGVGDFAKCNAATQKALDALEFQRSGSDVLAFSTGLAGTWEGMSIQLTVA
Ga0228699_1000687	Ga0228699_100068756	F066582	MTTQHYRRLEDGAMDDIDAAVWSGDLFHNRENIAEFRKMMARWERGLKECEDILTELEKENEQTN
Ga0228699_1001868	Ga0228699_10018683	F031788	MKMFPNLQAPVLHRVVYAHTIDGVPAQWQISYKDYIVNEWLKENCQHPYYHSPGYLREKFIEFECDEDAMMFALRWA
Ga0228699_1001886	Ga0228699_100188614	F089842	MKILISGCSFTKWPEYPGGPNTCWPGYIKGHDITNVGEAAAGNQYICDSVIQETLQNNYDMVIVMWSGVSRLDYLTDVTDPNWNELFDSYGFYRRLNNGKLGWIFSGGQMGTWYKNPVAHKMFYEQYKVSSPLSLAHINLSEILKLQGYLKGRNIPFKFMSYVNYWNDKEHVSPNGDFGIWSFPEIQHMIRNVDWENWIFSNQQRDGIYELSKEMNSFMSDGFHPGAEAHERWAELIMSR
Ga0228699_1002133	Ga0228699_100213310	F019483	MAGGTGTAEIDFGSFPGSNEASVTVTGLSAISGTSKVEAFVMADDSTTGHTAGDHRYFAALCGLTCGAVVAGTGFTIYARSTEKLQGIFALRWVWSD
Ga0228699_1002134	Ga0228699_100213416	F015606	MADLTGISTDPFFSLLQNTQDVKTKVSDSIFENYKLQVAQTNDINNRAMQVALNGANALADVKAAVAKGTLETMLAAGRTDAVIGRTAQETQRAVFEQGELTRRLIQDLNTQNLNTALINTNTALSGLNGQYAGLGLAYGGAVGAAQVANTNSVVNAMGSALSNQRIINTGAMTGTAQTSTPTTIR
Ga0228699_1006807	Ga0228699_10068072	F099158	MILEDLEYIFKPQFEEGTTNLYFMLIDGEYKMIQRHKSTDLETLLPMLDVFQYAGTEARVPRFMK
Ga0228699_1020433	Ga0228699_10204332	F050213	MPTIIQLLKSRTVIFAILLAALSAVQCYVGLLPLSPVDQMYVGIAISVIVTVLRIVTTQPISEK
Ga0228699_1025227	Ga0228699_10252274	F025021	MAEVKLNGPLYKVTMTEYERGYGQRPMGEKLFDNEQEAKDFVAEYNKDPGDPDCYYRADYRKV
Ga0228699_1029053	Ga0228699_10290532	F019483	MANGTGTATINFGSFPGANEASVAVTGLTTISATSKAEAYFMGDDTSGTHTAADHRYAPLFINLTCGTPTAGTGFTIYGRCLDKMQGSFNVRFVWSD
Ga0228699_1034415	Ga0228699_10344152	F019483	MANGIGTAEIDFGAFPGSNNASVAVTGQTGISATSKAEAFVMADDTSTDGHTANDHRYFDMLSGLTCGTPTAGTGFTIYATSQHALQGKFALRWVWSD
Ga0228699_1036190	Ga0228699_10361903	F019483	MATAQGTATLNFGAHPGSNEASVAVTGQGSIAATSKAEAYVMADDTTADHTAQDHRYFAALAGLTCGTPTAATGFTIYARCPEKLSGQFQIRWVWAD
Ga0228699_1040251	Ga0228699_10402512	F019483	MANGTGTATIDFGAFPGKTETSVAVIGQVTISATSKVEAWFMGDDTSTSHTAADHKYVPLFMALTCGTPTAGTGFTIYARARDKLQGTWTVRWVWSD
Ga0228699_1056150	Ga0228699_10561502	F078424	VSTSGVTYVQGLDSGNYEFTHVAATVTASGDTVVYTPSLGKRIRVYWSYAITDPSSSASPLIKIILGGTEKFRVYALSKRQQMTGPVDGTLVVNLSTAASVAVTFVLEEVGA
Ga0228699_1066426	Ga0228699_10664264	F101135	MKDIEIEQYCDGWAVKVDGKSFSWDHNDEDMGTESINALLTYLGHNVTVEECY
Ga0228699_1111668	Ga0228699_11116681	F078934	MCMTLQLLPAQTIGDLLQGSPVLSGEGVRRIVRSYFVSSGFTSELVLGMPCSDSA
Ga0228699_1112508	Ga0228699_11125081	F007510	NPMDGGAWWAAVQGVARSWTRLSDFTFTFHFHALEKEIATHSSVLAWRIPGMGEPGGLTSTGSHRVGHD