NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300022141

3300022141: Metatranscriptome of freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 20-17 MT (Metagenome Metatranscriptome)



Overview

Basic Information
IMG/M Taxon OID3300022141 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0131212 | Gp0238842 | Ga0213933
Sample NameMetatranscriptome of freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 20-17 MT (Metagenome Metatranscriptome)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size54878557
Sequencing Scaffolds37
Novel Protein Genes44
Associated Families34

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Riboviria1
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Timlovirales → Steitzviridae → Tehnicivirus → Tehnicivirus pelovicinum1
Not Available23
All Organisms → Viruses → Predicted Viral2
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Atkinsviridae3
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila1
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales1
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia1
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Fiersviridae1
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Cryptomonadaceae → Cryptomonas → Cryptomonas curvata1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameFreshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater biomebayoufresh water
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationUSA: Georgia
CoordinatesLat. (o)33.9266Long. (o)-83.4611Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000191Metagenome / Metatranscriptome1666Y
F000344Metagenome / Metatranscriptome1257Y
F000652Metagenome / Metatranscriptome959Y
F001233Metagenome / Metatranscriptome741Y
F001296Metagenome / Metatranscriptome728Y
F002020Metagenome / Metatranscriptome603Y
F003269Metagenome / Metatranscriptome496Y
F004323Metagenome / Metatranscriptome443Y
F005443Metagenome / Metatranscriptome400Y
F005563Metagenome / Metatranscriptome396Y
F009063Metagenome / Metatranscriptome323N
F009078Metagenome / Metatranscriptome323Y
F009426Metagenome / Metatranscriptome318Y
F010749Metagenome / Metatranscriptome299Y
F010923Metagenome / Metatranscriptome297Y
F011759Metagenome / Metatranscriptome287Y
F012351Metagenome / Metatranscriptome281Y
F014988Metagenome / Metatranscriptome258Y
F016502Metagenome / Metatranscriptome246Y
F020183Metagenome / Metatranscriptome225Y
F023855Metagenome / Metatranscriptome208Y
F025292Metagenome / Metatranscriptome202Y
F028190Metagenome / Metatranscriptome192Y
F034973Metagenome / Metatranscriptome173Y
F042356Metagenome / Metatranscriptome158Y
F045132Metagenome / Metatranscriptome153Y
F055473Metagenome / Metatranscriptome138Y
F062800Metagenome / Metatranscriptome130N
F065470Metagenome / Metatranscriptome127Y
F069733Metatranscriptome123N
F076133Metagenome / Metatranscriptome118Y
F085004Metagenome / Metatranscriptome111Y
F085203Metagenome / Metatranscriptome111Y
F094695Metagenome / Metatranscriptome105Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0213933_100340All Organisms → Viruses → Riboviria3723Open in IMG/M
Ga0213933_101103All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Timlovirales → Steitzviridae → Tehnicivirus → Tehnicivirus pelovicinum2280Open in IMG/M
Ga0213933_101562Not Available1968Open in IMG/M
Ga0213933_106701All Organisms → Viruses → Predicted Viral1055Open in IMG/M
Ga0213933_107260All Organisms → Viruses → Predicted Viral1015Open in IMG/M
Ga0213933_108242Not Available957Open in IMG/M
Ga0213933_108292All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Atkinsviridae955Open in IMG/M
Ga0213933_108900Not Available924Open in IMG/M
Ga0213933_110210Not Available862Open in IMG/M
Ga0213933_110511All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage851Open in IMG/M
Ga0213933_111433Not Available819Open in IMG/M
Ga0213933_111487All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila818Open in IMG/M
Ga0213933_111659Not Available812Open in IMG/M
Ga0213933_111902Not Available804Open in IMG/M
Ga0213933_112188Not Available795Open in IMG/M
Ga0213933_113676Not Available754Open in IMG/M
Ga0213933_113805All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales751Open in IMG/M
Ga0213933_113954Not Available747Open in IMG/M
Ga0213933_117530Not Available675Open in IMG/M
Ga0213933_118652Not Available657Open in IMG/M
Ga0213933_119036Not Available652Open in IMG/M
Ga0213933_119943All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Atkinsviridae638Open in IMG/M
Ga0213933_120575Not Available630Open in IMG/M
Ga0213933_120651Not Available628Open in IMG/M
Ga0213933_120882All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes625Open in IMG/M
Ga0213933_123673Not Available592Open in IMG/M
Ga0213933_125661All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Atkinsviridae572Open in IMG/M
Ga0213933_126099Not Available568Open in IMG/M
Ga0213933_126712Not Available561Open in IMG/M
Ga0213933_126890Not Available560Open in IMG/M
Ga0213933_127206All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia557Open in IMG/M
Ga0213933_132109All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Fiersviridae518Open in IMG/M
Ga0213933_132228All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Cryptomonadaceae → Cryptomonas → Cryptomonas curvata517Open in IMG/M
Ga0213933_133124Not Available511Open in IMG/M
Ga0213933_133164Not Available511Open in IMG/M
Ga0213933_133604Not Available508Open in IMG/M
Ga0213933_133640Not Available507Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0213933_100327Ga0213933_1003272F025292MSVSLSTPVTGVVMSGFTAPTYTVVADNAPSVFGKQWSVSALGGTQAGVTAASVAAPFSVSFFRPAIFKALGKTNPVTGLLPSVPKNQYKAITRKGVLPLAGQPYSNLIITTTIEVPAGADVADAANVKAAFSLHIGALSQIGAGFGDTALSGIL
Ga0213933_100340Ga0213933_1003402F085004MGLKTMSLLAGATVAASGGSALAFAEDGQSIANGLHLIVPADADYQTRRQVTIKYRQPSLDAKTGVYGKDKKSICLALPMVLSTGQVVFNTIRIEREVHPSLSAANAAELIALGAQLLCDSDVTSFWATGALS
Ga0213933_100387Ga0213933_1003872F025292MTWSLTSPITGAAQTGFTAPTYTLTADTASDVNGKQSAVTALGGTQTGVVAHSVAAPFTIAFWRPKILKILGRTNPVTGLLPSVLLNTYKVVTKKGVLPLAGQPYALARISTVIEIPSGSDAADPANLRALFSAHIGALTQQSAGMGDTAITGVM
Ga0213933_101103Ga0213933_1011032F005443MLNNTLNTNEVKNSSAAEVEFSRLEIQDRRTVFSQIAENPSLPHRLTISHQEVGNGLKQRRRSLVRVDKTTLSGVDNVTPITTSAYLVLDFPIGGSTSTAEAANVIAEVLSFCATTGAGTTVLFDGTGNGAKSLIEGGL
Ga0213933_101562Ga0213933_1015626F034973MKSGKPRNAPKVKAPNPKKPNFMKEADTPSRLKIPMTPMKSKRLSK
Ga0213933_103683Ga0213933_1036833F000191VGNLVNQHVRFIESGEKDPLMTYEKALITQSRALEIPELD
Ga0213933_106701Ga0213933_1067013F009078MVHLNKHAHSGDRAITNKTGGGNRDAGCSGKNDGLQARKGNLSRWKVTGGADFTMKPIQLSGMRKCSVRV
Ga0213933_107260Ga0213933_1072603F000652MKAYVTTILRQELEVPEGWDRMDVYDFLGDCQSFRTAFQGVSNEDQTARILDIMVLEEEVTELGEEAYDD
Ga0213933_108242Ga0213933_1082421F085004MGLKNMSLLAGGTVATTGGTAQVFADDGITIPNGLHLIVPADADYQTRRSVTAKYRPPVVDPKTGTYTKDKKSVSYTCPVVLSSGQVVFNVIRIEREVHPSTTAAAALELNTIGAQLLADADVVGFWATGSLS
Ga0213933_108292Ga0213933_1082922F014988MAFAPTSPVTGAAIAAFTAPTYTIVADTPPNINGKQYAISALGGTQTGVDVNSVSKPFTSTFFRPQVLKPLPAANPTTGIVRSVPVNTYKLVTRKGAVPAANQTAQVARITTTIDAPAGTDTYEPEELKAMLSAHVGILNQQSSGIADTVTTGVL
Ga0213933_108900Ga0213933_1089002F062800KIIRGLSEFLAKPPMFYNYLFGIYKYCRVLAVELEVHWSSTGSDATRVCIGRVPHSDISGITYSQFSEMPESVTGIVSGKGGVDRLVQRKTFVARNAYGNALSDHSYWVNSAQAISSTPLHSDDYAILIMTDGVGLTSATSAVVKLKYHVEWFDLQYAV
Ga0213933_110210Ga0213933_1102102F011759MKDDLIADLWTVVVEHIPEKQRKDVAADFVNTLLDHGIKESVLDSLMGIDPYLDDAIEYATDGEDYG
Ga0213933_110511Ga0213933_1105113F005563MIDYHEALKEMHKGNVVKYVGTVNGNVMSDKGASFCMCRGCIFLFDDGVIKWNKLGYMVYDPDYRYELTGETVDPRAWKPEKKTDRKEIKSKLGYSRIG
Ga0213933_111433Ga0213933_1114331F023855VRSIVIRLYHYVIQYDGNLKTERYGEVRVVSLSSFIKLYQGFGIEGVQKYGSRDVTESSLVSSRSKDGLAR
Ga0213933_111487Ga0213933_1114871F000344MRPRHPHAAESGVGKHTARESESAKACADGEERVANAHSH
Ga0213933_111659Ga0213933_1116591F000344MRPKHPHAAESGVGKHTARESERAQACSTGKERVANAHS
Ga0213933_111902Ga0213933_1119021F003269VAVPALSGQDADRKHSRVLTWFAGRWRNHQPKRAEKPHSKSSGRKALDGPAARPKTPLAVENSVGELTAGSRKSYERQMSAAGKRAW
Ga0213933_112188Ga0213933_1121881F055473VALANAPVQAVADQCQTVKTRNQIRRRVLAWFAGRWRNHQPKRAEKPHSKASGGNALDGPATRPETPLAVENSVGKPAADQAPNATGKRAW
Ga0213933_113676Ga0213933_1136761F094695CQLLDGGITASSVRDPYFRETWDAVQRFSDESIGPSWVQPIPVQRLPFPAASFGFSLSAVVRELSHPRHSSLRLSCLLEALPPINWPRMRTRGRLSYDFFPYSARQKQASVYPGDSNLRHRPSSGFRTPSTSYSACNPGQLVSSALRSWGSTGSAHSPPPFGRGRVRRFRLSSSKLSPLPRRPPRRQSPLLHVIRCSGEGALR
Ga0213933_113805Ga0213933_1138051F020183MSLTVNAKTFTPDSFGVNAVGYIGSGKTVSVKDDVSLKRTAPKATDVFSGVGRTSAKMTRTLTLTGAKTLASDAICEISVSVPVGYSGTDVDALLNDMGSFLASASFKTHVKSQQINF
Ga0213933_113954Ga0213933_1139541F065470LVVRFEQEKIWRGTSMSKGCDETAGDTSGDNPDPETVPKTHGQAARKGCWERGSGHAETRSLTRRDTGDRSTVTLMPKQRPIARWRGR
Ga0213933_114379Ga0213933_1143791F085203TDRCIGLIFASPAVRAVLKRMDGLLKRKPKQAFDRWRKYVEAINNKEILDNFRSHKLLNCLSRIPIRKMRDVTQRIVGEGDKVRGALKKIFSTMQRMPKAALEKWRKYLQGLKDKSFFDNLRSAKLLNCLSRIPVRRTRDATQRILGGGSKIKGCLQTLVNGLKNIPRKALRKMKQVCEDIKNKKLFDNARSAKLQNSLEKITRKTLKETAERLKGLIFTSPAVRAVIKRMDGLLKRKPNEAFDR
Ga0213933_117530Ga0213933_1175301F016502MSPLRRTERSGRQFNPVRVVPGMATSPWNSCGAAETPGGASTDLSVQPP
Ga0213933_118652Ga0213933_1186521F085004MGMKNLSLLASATVAASGGSALAFADDGVTIPNGLHLIVPADADYQTRRQATVKYRPPTLDSKTGSYGKDKKSITLVQPIVLTDGRVVFNTMRIEREVHPSLSAANCTELNKLGAQLLVDTDTDGFWATGSLT
Ga0213933_119036Ga0213933_1190361F069733LHRLSGQSCDWFENRRSLDSPYEQLGKPDLKGVSFLQILIQAFLRLLKFSTCFMPYLLIACLISLPCGFVIKQKIAECRSFVRRIKIFLRISLSHAAFANLYYLASIYPGHPCEQPAQLKLFTKIDLGYSASTYLSYPCEQLTQLRLFASICLAAKIHSLLRGLASAWIFVSYETLKPLCLKRTFSTSWDRTVSDIAIVDLSCTGILINTG
Ga0213933_119943Ga0213933_1199431F014988PTINGKQYAITALGGTQTGVDINSVSKPFSISFFRPAVLKALPQPNPVTGVVKNIPMNTYKLITRKGVVPSVNQVAMTARITTTIDIPAGSDTYEPEELRALISAHFGVGSAQASGIADTVISGVI
Ga0213933_120575Ga0213933_1205751F001233ETDGGGNKKLTVDVSRIIPGDWGKAESGWLTRLLSSRSESSGGGGRIHQFLWPRSRAVSKREKGTWR
Ga0213933_120575Ga0213933_1205752F042356VHQHGAHDSGGINQPFESAQRKPPKGEQVERANREEHAGEAGRMKNFQVPAALKTTPLAC
Ga0213933_120651Ga0213933_1206511F045132VLIHSSNHYPLGNCDSPKPETSLDYLTRLGAVSHRSSSPSSFFAFTDSARTLPEELVNPASNSEYISTRLQRGLVNQPDPAFPRSPGRILETAAGKLLSTNRVSA
Ga0213933_120882Ga0213933_1208821F005443NSAGTEVEFFRISTGPRETVFRASSETPALQHRLKIKHQETGAGIKSRRRSVVRFDKTVISSVDSVTPVTVSAYAVLDTPIGYLSANTEPTHVLAELMSFMASLGATTTILYDATGNGAQVLLNGDL
Ga0213933_123673Ga0213933_1236732F020183MPLTFNTKTFANDTTVNGGASYLGPLKSVTIKDDLSLKRTAPKATDVFSGVARANAKLTRTLTLTGAKTSLGDAIVDISVSLPVGYAGADADALLNDMGAFLSGADFKTLVKNQKI
Ga0213933_125661Ga0213933_1256611F014988PTYTLTADTAPAINGKQFAITAVGGTQTGVDANTVSKPFTSTFFRPVQLRTLPAVNPLTGVLKSVPVNSYKLITRKGALPAANQVPSIARVTTIIDVPAGTDTYEPEELRAMLSAHIGLLNAQSAGIGDTVTTGIV
Ga0213933_126099Ga0213933_1260991F001296MEVAERRQPLRASEKPLRATGPGQEAASGEPGSIDPGAGETSQRGAERRIVRRFCLRCSMPCMPVVNKAGNQVTWN
Ga0213933_126712Ga0213933_1267123F010749MKKFTFWRNAIVAETYIIEAETEEKAREQLWNGDAEVFTEEFVDWASHDYELEDVEELDPLYRMVKDYDPARI
Ga0213933_126890Ga0213933_1268901F002020MHGIELREQKRRALRLSAPRWPFSPASGSMLPGSPLAASCPEPVARNGLVLARNGCRLSAASIPGSKLPACYFASFQVLSVPVRPFGSAPASRFAPVAAASLPVARCTSTTRSGLPRRRSPLPFRVFAPLGIKAFNRFCCLPVRLATPPDFLSLPAARPGESWGCGSSFQVRYV
Ga0213933_127206Ga0213933_1272061F004323MPLAGLRRLEGMSTPAVATHSPVTRDYPSRALSDVFQV
Ga0213933_129728Ga0213933_1297281F009063TAVLNLAASDSNDTTSTTSTNTPFNGALANAGLGYFSFATGQTLQAFSPVLYKQLVTVAEQRFNAKITNMVVPTSLRTSISDNIAQSRSINRFNPADKGDTIGTYEGDFNYTYQIDDSWVMDQTGSDNTSILFLNPDVIQWGSLRELGPNNEVFSNADASLDQYIMEGTLIVRNPAGV
Ga0213933_132109Ga0213933_1321092F028190TDIVYDALSASGGDSSPAVWRQDTGATAGLPVGLRNTFRLTTKWNGPKTARQLMFEFSYPYAVQDTTTQLYMTKDRVVCTGILTVPQGLPGTEINEGVAQALNLLAATLIKTSGQTGFAP
Ga0213933_132228Ga0213933_1322282F012351GSVTGASWVGGTNATDANIYFGALHINNENVSEDWLDDDQVSDMATGGNGPVTRNEGMYNAYTAVKTYWSDTIVMDNLRGGDATGVATPGAQ
Ga0213933_133124Ga0213933_1331241F076133FDPRADAVTPEGFGCYCADQNASAIPGGTTPPEGPVRRADRARKGVATAGSDRA
Ga0213933_133164Ga0213933_1331641F001296MEVAERRQSLRASEKPLRATGSGQKAASGEPGSIDPGAEENGQRGAERRIVRRFCLRCSMPCMPVVSQAGNQVTW
Ga0213933_133164Ga0213933_1331642F010923RAAGSERKSGGFVRWTGRQQKRLNALIPREVTILEGSGDRKRGRPNRVVEVQRARGSEAAATGANREAVVEPKGRTGTEAYLEGSEVAG
Ga0213933_133604Ga0213933_1336041F010923GIARKSDGFVRWTGRQRALLNALIPKDVKVLEGSGDSRSGRPDRVGEVQRVPGSEAAATGATGLAAVEPKGGPGTGTIRQGSEVAGQAL
Ga0213933_133640Ga0213933_1336401F009426AMTMKVNKDLKLSLDMIVGETPYSIILFMTTSPCVISVGSARETLFEGKADYCMNVCE

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