| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300022141 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0131212 | Gp0238842 | Ga0213933 |
| Sample Name | Metatranscriptome of freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 20-17 MT (Metagenome Metatranscriptome) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 54878557 |
| Sequencing Scaffolds | 37 |
| Novel Protein Genes | 44 |
| Associated Families | 34 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → Viruses → Riboviria | 1 |
| All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Timlovirales → Steitzviridae → Tehnicivirus → Tehnicivirus pelovicinum | 1 |
| Not Available | 23 |
| All Organisms → Viruses → Predicted Viral | 2 |
| All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Atkinsviridae | 3 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 1 |
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila | 1 |
| All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales | 1 |
| All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia | 1 |
| All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Fiersviridae | 1 |
| All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Cryptomonadaceae → Cryptomonas → Cryptomonas curvata | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | freshwater biome → bayou → fresh water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 33.9266 | Long. (o) | -83.4611 | Alt. (m) | N/A | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000191 | Metagenome / Metatranscriptome | 1666 | Y |
| F000344 | Metagenome / Metatranscriptome | 1257 | Y |
| F000652 | Metagenome / Metatranscriptome | 959 | Y |
| F001233 | Metagenome / Metatranscriptome | 741 | Y |
| F001296 | Metagenome / Metatranscriptome | 728 | Y |
| F002020 | Metagenome / Metatranscriptome | 603 | Y |
| F003269 | Metagenome / Metatranscriptome | 496 | Y |
| F004323 | Metagenome / Metatranscriptome | 443 | Y |
| F005443 | Metagenome / Metatranscriptome | 400 | Y |
| F005563 | Metagenome / Metatranscriptome | 396 | Y |
| F009063 | Metagenome / Metatranscriptome | 323 | N |
| F009078 | Metagenome / Metatranscriptome | 323 | Y |
| F009426 | Metagenome / Metatranscriptome | 318 | Y |
| F010749 | Metagenome / Metatranscriptome | 299 | Y |
| F010923 | Metagenome / Metatranscriptome | 297 | Y |
| F011759 | Metagenome / Metatranscriptome | 287 | Y |
| F012351 | Metagenome / Metatranscriptome | 281 | Y |
| F014988 | Metagenome / Metatranscriptome | 258 | Y |
| F016502 | Metagenome / Metatranscriptome | 246 | Y |
| F020183 | Metagenome / Metatranscriptome | 225 | Y |
| F023855 | Metagenome / Metatranscriptome | 208 | Y |
| F025292 | Metagenome / Metatranscriptome | 202 | Y |
| F028190 | Metagenome / Metatranscriptome | 192 | Y |
| F034973 | Metagenome / Metatranscriptome | 173 | Y |
| F042356 | Metagenome / Metatranscriptome | 158 | Y |
| F045132 | Metagenome / Metatranscriptome | 153 | Y |
| F055473 | Metagenome / Metatranscriptome | 138 | Y |
| F062800 | Metagenome / Metatranscriptome | 130 | N |
| F065470 | Metagenome / Metatranscriptome | 127 | Y |
| F069733 | Metatranscriptome | 123 | N |
| F076133 | Metagenome / Metatranscriptome | 118 | Y |
| F085004 | Metagenome / Metatranscriptome | 111 | Y |
| F085203 | Metagenome / Metatranscriptome | 111 | Y |
| F094695 | Metagenome / Metatranscriptome | 105 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0213933_100340 | All Organisms → Viruses → Riboviria | 3723 | Open in IMG/M |
| Ga0213933_101103 | All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Timlovirales → Steitzviridae → Tehnicivirus → Tehnicivirus pelovicinum | 2280 | Open in IMG/M |
| Ga0213933_101562 | Not Available | 1968 | Open in IMG/M |
| Ga0213933_106701 | All Organisms → Viruses → Predicted Viral | 1055 | Open in IMG/M |
| Ga0213933_107260 | All Organisms → Viruses → Predicted Viral | 1015 | Open in IMG/M |
| Ga0213933_108242 | Not Available | 957 | Open in IMG/M |
| Ga0213933_108292 | All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Atkinsviridae | 955 | Open in IMG/M |
| Ga0213933_108900 | Not Available | 924 | Open in IMG/M |
| Ga0213933_110210 | Not Available | 862 | Open in IMG/M |
| Ga0213933_110511 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 851 | Open in IMG/M |
| Ga0213933_111433 | Not Available | 819 | Open in IMG/M |
| Ga0213933_111487 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila | 818 | Open in IMG/M |
| Ga0213933_111659 | Not Available | 812 | Open in IMG/M |
| Ga0213933_111902 | Not Available | 804 | Open in IMG/M |
| Ga0213933_112188 | Not Available | 795 | Open in IMG/M |
| Ga0213933_113676 | Not Available | 754 | Open in IMG/M |
| Ga0213933_113805 | All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales | 751 | Open in IMG/M |
| Ga0213933_113954 | Not Available | 747 | Open in IMG/M |
| Ga0213933_117530 | Not Available | 675 | Open in IMG/M |
| Ga0213933_118652 | Not Available | 657 | Open in IMG/M |
| Ga0213933_119036 | Not Available | 652 | Open in IMG/M |
| Ga0213933_119943 | All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Atkinsviridae | 638 | Open in IMG/M |
| Ga0213933_120575 | Not Available | 630 | Open in IMG/M |
| Ga0213933_120651 | Not Available | 628 | Open in IMG/M |
| Ga0213933_120882 | All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes | 625 | Open in IMG/M |
| Ga0213933_123673 | Not Available | 592 | Open in IMG/M |
| Ga0213933_125661 | All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Atkinsviridae | 572 | Open in IMG/M |
| Ga0213933_126099 | Not Available | 568 | Open in IMG/M |
| Ga0213933_126712 | Not Available | 561 | Open in IMG/M |
| Ga0213933_126890 | Not Available | 560 | Open in IMG/M |
| Ga0213933_127206 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia | 557 | Open in IMG/M |
| Ga0213933_132109 | All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Fiersviridae | 518 | Open in IMG/M |
| Ga0213933_132228 | All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Cryptomonadaceae → Cryptomonas → Cryptomonas curvata | 517 | Open in IMG/M |
| Ga0213933_133124 | Not Available | 511 | Open in IMG/M |
| Ga0213933_133164 | Not Available | 511 | Open in IMG/M |
| Ga0213933_133604 | Not Available | 508 | Open in IMG/M |
| Ga0213933_133640 | Not Available | 507 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0213933_100327 | Ga0213933_1003272 | F025292 | MSVSLSTPVTGVVMSGFTAPTYTVVADNAPSVFGKQWSVSALGGTQAGVTAASVAAPFSVSFFRPAIFKALGKTNPVTGLLPSVPKNQYKAITRKGVLPLAGQPYSNLIITTTIEVPAGADVADAANVKAAFSLHIGALSQIGAGFGDTALSGIL |
| Ga0213933_100340 | Ga0213933_1003402 | F085004 | MGLKTMSLLAGATVAASGGSALAFAEDGQSIANGLHLIVPADADYQTRRQVTIKYRQPSLDAKTGVYGKDKKSICLALPMVLSTGQVVFNTIRIEREVHPSLSAANAAELIALGAQLLCDSDVTSFWATGALS |
| Ga0213933_100387 | Ga0213933_1003872 | F025292 | MTWSLTSPITGAAQTGFTAPTYTLTADTASDVNGKQSAVTALGGTQTGVVAHSVAAPFTIAFWRPKILKILGRTNPVTGLLPSVLLNTYKVVTKKGVLPLAGQPYALARISTVIEIPSGSDAADPANLRALFSAHIGALTQQSAGMGDTAITGVM |
| Ga0213933_101103 | Ga0213933_1011032 | F005443 | MLNNTLNTNEVKNSSAAEVEFSRLEIQDRRTVFSQIAENPSLPHRLTISHQEVGNGLKQRRRSLVRVDKTTLSGVDNVTPITTSAYLVLDFPIGGSTSTAEAANVIAEVLSFCATTGAGTTVLFDGTGNGAKSLIEGGL |
| Ga0213933_101562 | Ga0213933_1015626 | F034973 | MKSGKPRNAPKVKAPNPKKPNFMKEADTPSRLKIPMTPMKSKRLSK |
| Ga0213933_103683 | Ga0213933_1036833 | F000191 | VGNLVNQHVRFIESGEKDPLMTYEKALITQSRALEIPELD |
| Ga0213933_106701 | Ga0213933_1067013 | F009078 | MVHLNKHAHSGDRAITNKTGGGNRDAGCSGKNDGLQARKGNLSRWKVTGGADFTMKPIQLSGMRKCSVRV |
| Ga0213933_107260 | Ga0213933_1072603 | F000652 | MKAYVTTILRQELEVPEGWDRMDVYDFLGDCQSFRTAFQGVSNEDQTARILDIMVLEEEVTELGEEAYDD |
| Ga0213933_108242 | Ga0213933_1082421 | F085004 | MGLKNMSLLAGGTVATTGGTAQVFADDGITIPNGLHLIVPADADYQTRRSVTAKYRPPVVDPKTGTYTKDKKSVSYTCPVVLSSGQVVFNVIRIEREVHPSTTAAAALELNTIGAQLLADADVVGFWATGSLS |
| Ga0213933_108292 | Ga0213933_1082922 | F014988 | MAFAPTSPVTGAAIAAFTAPTYTIVADTPPNINGKQYAISALGGTQTGVDVNSVSKPFTSTFFRPQVLKPLPAANPTTGIVRSVPVNTYKLVTRKGAVPAANQTAQVARITTTIDAPAGTDTYEPEELKAMLSAHVGILNQQSSGIADTVTTGVL |
| Ga0213933_108900 | Ga0213933_1089002 | F062800 | KIIRGLSEFLAKPPMFYNYLFGIYKYCRVLAVELEVHWSSTGSDATRVCIGRVPHSDISGITYSQFSEMPESVTGIVSGKGGVDRLVQRKTFVARNAYGNALSDHSYWVNSAQAISSTPLHSDDYAILIMTDGVGLTSATSAVVKLKYHVEWFDLQYAV |
| Ga0213933_110210 | Ga0213933_1102102 | F011759 | MKDDLIADLWTVVVEHIPEKQRKDVAADFVNTLLDHGIKESVLDSLMGIDPYLDDAIEYATDGEDYG |
| Ga0213933_110511 | Ga0213933_1105113 | F005563 | MIDYHEALKEMHKGNVVKYVGTVNGNVMSDKGASFCMCRGCIFLFDDGVIKWNKLGYMVYDPDYRYELTGETVDPRAWKPEKKTDRKEIKSKLGYSRIG |
| Ga0213933_111433 | Ga0213933_1114331 | F023855 | VRSIVIRLYHYVIQYDGNLKTERYGEVRVVSLSSFIKLYQGFGIEGVQKYGSRDVTESSLVSSRSKDGLAR |
| Ga0213933_111487 | Ga0213933_1114871 | F000344 | MRPRHPHAAESGVGKHTARESESAKACADGEERVANAHSH |
| Ga0213933_111659 | Ga0213933_1116591 | F000344 | MRPKHPHAAESGVGKHTARESERAQACSTGKERVANAHS |
| Ga0213933_111902 | Ga0213933_1119021 | F003269 | VAVPALSGQDADRKHSRVLTWFAGRWRNHQPKRAEKPHSKSSGRKALDGPAARPKTPLAVENSVGELTAGSRKSYERQMSAAGKRAW |
| Ga0213933_112188 | Ga0213933_1121881 | F055473 | VALANAPVQAVADQCQTVKTRNQIRRRVLAWFAGRWRNHQPKRAEKPHSKASGGNALDGPATRPETPLAVENSVGKPAADQAPNATGKRAW |
| Ga0213933_113676 | Ga0213933_1136761 | F094695 | CQLLDGGITASSVRDPYFRETWDAVQRFSDESIGPSWVQPIPVQRLPFPAASFGFSLSAVVRELSHPRHSSLRLSCLLEALPPINWPRMRTRGRLSYDFFPYSARQKQASVYPGDSNLRHRPSSGFRTPSTSYSACNPGQLVSSALRSWGSTGSAHSPPPFGRGRVRRFRLSSSKLSPLPRRPPRRQSPLLHVIRCSGEGALR |
| Ga0213933_113805 | Ga0213933_1138051 | F020183 | MSLTVNAKTFTPDSFGVNAVGYIGSGKTVSVKDDVSLKRTAPKATDVFSGVGRTSAKMTRTLTLTGAKTLASDAICEISVSVPVGYSGTDVDALLNDMGSFLASASFKTHVKSQQINF |
| Ga0213933_113954 | Ga0213933_1139541 | F065470 | LVVRFEQEKIWRGTSMSKGCDETAGDTSGDNPDPETVPKTHGQAARKGCWERGSGHAETRSLTRRDTGDRSTVTLMPKQRPIARWRGR |
| Ga0213933_114379 | Ga0213933_1143791 | F085203 | TDRCIGLIFASPAVRAVLKRMDGLLKRKPKQAFDRWRKYVEAINNKEILDNFRSHKLLNCLSRIPIRKMRDVTQRIVGEGDKVRGALKKIFSTMQRMPKAALEKWRKYLQGLKDKSFFDNLRSAKLLNCLSRIPVRRTRDATQRILGGGSKIKGCLQTLVNGLKNIPRKALRKMKQVCEDIKNKKLFDNARSAKLQNSLEKITRKTLKETAERLKGLIFTSPAVRAVIKRMDGLLKRKPNEAFDR |
| Ga0213933_117530 | Ga0213933_1175301 | F016502 | MSPLRRTERSGRQFNPVRVVPGMATSPWNSCGAAETPGGASTDLSVQPP |
| Ga0213933_118652 | Ga0213933_1186521 | F085004 | MGMKNLSLLASATVAASGGSALAFADDGVTIPNGLHLIVPADADYQTRRQATVKYRPPTLDSKTGSYGKDKKSITLVQPIVLTDGRVVFNTMRIEREVHPSLSAANCTELNKLGAQLLVDTDTDGFWATGSLT |
| Ga0213933_119036 | Ga0213933_1190361 | F069733 | LHRLSGQSCDWFENRRSLDSPYEQLGKPDLKGVSFLQILIQAFLRLLKFSTCFMPYLLIACLISLPCGFVIKQKIAECRSFVRRIKIFLRISLSHAAFANLYYLASIYPGHPCEQPAQLKLFTKIDLGYSASTYLSYPCEQLTQLRLFASICLAAKIHSLLRGLASAWIFVSYETLKPLCLKRTFSTSWDRTVSDIAIVDLSCTGILINTG |
| Ga0213933_119943 | Ga0213933_1199431 | F014988 | PTINGKQYAITALGGTQTGVDINSVSKPFSISFFRPAVLKALPQPNPVTGVVKNIPMNTYKLITRKGVVPSVNQVAMTARITTTIDIPAGSDTYEPEELRALISAHFGVGSAQASGIADTVISGVI |
| Ga0213933_120575 | Ga0213933_1205751 | F001233 | ETDGGGNKKLTVDVSRIIPGDWGKAESGWLTRLLSSRSESSGGGGRIHQFLWPRSRAVSKREKGTWR |
| Ga0213933_120575 | Ga0213933_1205752 | F042356 | VHQHGAHDSGGINQPFESAQRKPPKGEQVERANREEHAGEAGRMKNFQVPAALKTTPLAC |
| Ga0213933_120651 | Ga0213933_1206511 | F045132 | VLIHSSNHYPLGNCDSPKPETSLDYLTRLGAVSHRSSSPSSFFAFTDSARTLPEELVNPASNSEYISTRLQRGLVNQPDPAFPRSPGRILETAAGKLLSTNRVSA |
| Ga0213933_120882 | Ga0213933_1208821 | F005443 | NSAGTEVEFFRISTGPRETVFRASSETPALQHRLKIKHQETGAGIKSRRRSVVRFDKTVISSVDSVTPVTVSAYAVLDTPIGYLSANTEPTHVLAELMSFMASLGATTTILYDATGNGAQVLLNGDL |
| Ga0213933_123673 | Ga0213933_1236732 | F020183 | MPLTFNTKTFANDTTVNGGASYLGPLKSVTIKDDLSLKRTAPKATDVFSGVARANAKLTRTLTLTGAKTSLGDAIVDISVSLPVGYAGADADALLNDMGAFLSGADFKTLVKNQKI |
| Ga0213933_125661 | Ga0213933_1256611 | F014988 | PTYTLTADTAPAINGKQFAITAVGGTQTGVDANTVSKPFTSTFFRPVQLRTLPAVNPLTGVLKSVPVNSYKLITRKGALPAANQVPSIARVTTIIDVPAGTDTYEPEELRAMLSAHIGLLNAQSAGIGDTVTTGIV |
| Ga0213933_126099 | Ga0213933_1260991 | F001296 | MEVAERRQPLRASEKPLRATGPGQEAASGEPGSIDPGAGETSQRGAERRIVRRFCLRCSMPCMPVVNKAGNQVTWN |
| Ga0213933_126712 | Ga0213933_1267123 | F010749 | MKKFTFWRNAIVAETYIIEAETEEKAREQLWNGDAEVFTEEFVDWASHDYELEDVEELDPLYRMVKDYDPARI |
| Ga0213933_126890 | Ga0213933_1268901 | F002020 | MHGIELREQKRRALRLSAPRWPFSPASGSMLPGSPLAASCPEPVARNGLVLARNGCRLSAASIPGSKLPACYFASFQVLSVPVRPFGSAPASRFAPVAAASLPVARCTSTTRSGLPRRRSPLPFRVFAPLGIKAFNRFCCLPVRLATPPDFLSLPAARPGESWGCGSSFQVRYV |
| Ga0213933_127206 | Ga0213933_1272061 | F004323 | MPLAGLRRLEGMSTPAVATHSPVTRDYPSRALSDVFQV |
| Ga0213933_129728 | Ga0213933_1297281 | F009063 | TAVLNLAASDSNDTTSTTSTNTPFNGALANAGLGYFSFATGQTLQAFSPVLYKQLVTVAEQRFNAKITNMVVPTSLRTSISDNIAQSRSINRFNPADKGDTIGTYEGDFNYTYQIDDSWVMDQTGSDNTSILFLNPDVIQWGSLRELGPNNEVFSNADASLDQYIMEGTLIVRNPAGV |
| Ga0213933_132109 | Ga0213933_1321092 | F028190 | TDIVYDALSASGGDSSPAVWRQDTGATAGLPVGLRNTFRLTTKWNGPKTARQLMFEFSYPYAVQDTTTQLYMTKDRVVCTGILTVPQGLPGTEINEGVAQALNLLAATLIKTSGQTGFAP |
| Ga0213933_132228 | Ga0213933_1322282 | F012351 | GSVTGASWVGGTNATDANIYFGALHINNENVSEDWLDDDQVSDMATGGNGPVTRNEGMYNAYTAVKTYWSDTIVMDNLRGGDATGVATPGAQ |
| Ga0213933_133124 | Ga0213933_1331241 | F076133 | FDPRADAVTPEGFGCYCADQNASAIPGGTTPPEGPVRRADRARKGVATAGSDRA |
| Ga0213933_133164 | Ga0213933_1331641 | F001296 | MEVAERRQSLRASEKPLRATGSGQKAASGEPGSIDPGAEENGQRGAERRIVRRFCLRCSMPCMPVVSQAGNQVTW |
| Ga0213933_133164 | Ga0213933_1331642 | F010923 | RAAGSERKSGGFVRWTGRQQKRLNALIPREVTILEGSGDRKRGRPNRVVEVQRARGSEAAATGANREAVVEPKGRTGTEAYLEGSEVAG |
| Ga0213933_133604 | Ga0213933_1336041 | F010923 | GIARKSDGFVRWTGRQRALLNALIPKDVKVLEGSGDSRSGRPDRVGEVQRVPGSEAAATGATGLAAVEPKGGPGTGTIRQGSEVAGQAL |
| Ga0213933_133640 | Ga0213933_1336401 | F009426 | AMTMKVNKDLKLSLDMIVGETPYSIILFMTTSPCVISVGSARETLFEGKADYCMNVCE |
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