NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300021604

3300021604: Anaerobic ammonium oxidizing microbial communities from anammox membrane bioreactor (MBR) in UC Berkley, California, United States - LAC_MetaG_1



Overview

Basic Information
IMG/M Taxon OID3300021604 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0132838 | Gp0264961 | Ga0226835
Sample NameAnaerobic ammonium oxidizing microbial communities from anammox membrane bioreactor (MBR) in UC Berkley, California, United States - LAC_MetaG_1
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size182905725
Sequencing Scaffolds9
Novel Protein Genes10
Associated Families7

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → unclassified Anaerolineaceae → Anaerolineaceae bacterium1
Not Available1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameAnaerobic Ammonium Oxidizing Microbial Communities From Anammox Membrane Bioreactor (Mbr) In Uc Berkley, California, United States
TypeEngineered
TaxonomyEngineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Anaerobic Bioreactor Biomass → Anaerobic Ammonium Oxidizing Microbial Communities From Anammox Membrane Bioreactor (Mbr) In Uc Berkley, California, United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)na → na → na

Location Information
LocationUSA: California
CoordinatesLat. (o)37.8719Long. (o)-122.2585Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002525Metagenome / Metatranscriptome552Y
F019239Metagenome231Y
F023385Metagenome / Metatranscriptome210Y
F024166Metagenome / Metatranscriptome207Y
F025315Metagenome202Y
F048673Metagenome / Metatranscriptome148Y
F072580Metagenome / Metatranscriptome121Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0226835_1000044All Organisms → cellular organisms → Bacteria266802Open in IMG/M
Ga0226835_1000130All Organisms → cellular organisms → Bacteria135578Open in IMG/M
Ga0226835_1000660All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria30858Open in IMG/M
Ga0226835_1001381All Organisms → cellular organisms → Bacteria13443Open in IMG/M
Ga0226835_1007659All Organisms → cellular organisms → Bacteria2761Open in IMG/M
Ga0226835_1011610All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1926Open in IMG/M
Ga0226835_1013831All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → unclassified Anaerolineaceae → Anaerolineaceae bacterium1657Open in IMG/M
Ga0226835_1019855All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1198Open in IMG/M
Ga0226835_1050666Not Available516Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0226835_1000044Ga0226835_100004480F048673MRTLAWLLILVALAASQPQHWLGSFLAALAHLLGA
Ga0226835_1000130Ga0226835_100013075F048673MRTFAWLLILVAIAVSQPHHWLGSFLATLAHLLGA
Ga0226835_1000660Ga0226835_100066033F024166MVPGTRVEVRSRFERAWARGFEIAEEVGGPDGDDVRYRIRRRSDGSVLPALFTVDDVREEKRDRLWWI
Ga0226835_1001381Ga0226835_10013819F025315MQNYLLVTFEILLVVVMPLLVLYIKGNWSLRKIIPSLVIIPVFWYFSYTILHELSHAAGLYLVGGNAIDHRLIPRFWLGQFSGAWVTPSGIPQSWQQLTFHSFPYLLDIVCLVVALFVFRRGFSRNPFSTGLAFMLLCLRPALDMVGETIGLLTGWRGDLYNMQQIIGSFALWSFILISIGLAVYSILENLIHLIRHSKIVRTSC
Ga0226835_1007659Ga0226835_10076594F023385LLRTIFTGLRKSGHLDLEAVEMLVRSAMHRAGAAALTELLEFPEPDQRTIPCPCGRLARY
Ga0226835_1009331Ga0226835_10093314F019239VKPTSPDARSDALRFSYEDLRAQVLAGGRGPGLAIFLRQGMREWIELCCSCTPMMAAMGPVSVSANPECVPAEVRSEIVVILAGLFLQKRWEAMQ
Ga0226835_1011610Ga0226835_10116103F002525VWAGVDNAWEQGKLKARKMLENAAESHTSGARFVSLRLFL
Ga0226835_1013831Ga0226835_10138313F002525VWAGVDNAWEQEKLEARKMLENAAESHTSGARFVSPFLF
Ga0226835_1019855Ga0226835_10198552F002525VWVGVDSAWEQEKLEARKMLENAAESHTSGARFVRRSFARAF
Ga0226835_1050666Ga0226835_10506661F072580GILAEARSPKPIPFFRRRDIEALFGLKKRQAVNLMHRIGAIRVSRELAVEQRDLIRWLEQMLSDPSVAIEQRRHERVISRIVELKAETAARAVRIVLPDPAPSVDFPEGVSLQPGLLTISFENEQQLLQRLFLLARVLATQPQILTNL
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