3300021579: Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 2-17 MG

Overview

Basic Information

• IMG/M Taxon OID: 3300021579
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0131212 | Gp0238827 | Ga0213918
• Sample Name: Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 2-17 MG
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 156306085
• Sequencing Scaffolds: 17
• Novel Protein Genes: 18
• Associated Families: 13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria	3
Not Available	7
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Actinopterygii → Actinopteri → Neopterygii → Teleostei → Osteoglossocephalai → Clupeocephala → Otomorpha → Ostariophysi → Otophysi → Cypriniphysae → Cypriniformes → Cyprinoidei	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Actinopterygii → Actinopteri → Neopterygii → Teleostei → Osteoglossocephalai → Clupeocephala → Otomorpha → Ostariophysi → Otophysi → Cypriniphysae → Cypriniformes → Cyprinoidei → Xenocyprididae → Xenocypridinae → Xenocypridinae incertae sedis → Anabarilius → Anabarilius grahami	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfurellales → unclassified Desulfurellales → Desulfurellales bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater biome → bayou → fresh water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: USA: Georgia
• Coordinates
  • Lat. (^o): 33.9363
  • Long. (^o): -83.5573
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004133	Metagenome / Metatranscriptome	451	Y
F008619	Metagenome	330	Y
F011148	Metagenome / Metatranscriptome	294	Y
F016472	Metagenome	247	Y
F019483	Metagenome / Metatranscriptome	229	Y
F034114	Metagenome / Metatranscriptome	175	Y
F038145	Metagenome / Metatranscriptome	166	Y
F058950	Metagenome / Metatranscriptome	134	Y
F060712	Metagenome / Metatranscriptome	132	Y
F074774	Metagenome / Metatranscriptome	119	Y
F079293	Metagenome	116	Y
F096738	Metagenome / Metatranscriptome	104	Y
F104784	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0213918_1000115	All Organisms → cellular organisms → Bacteria → Proteobacteria	35547
Ga0213918_1000206	Not Available	18559
Ga0213918_1000744	All Organisms → cellular organisms → Bacteria → Proteobacteria	6119
Ga0213918_1000801	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	5840
Ga0213918_1001450	All Organisms → Viruses → Predicted Viral	3880
Ga0213918_1002264	Not Available	2923
Ga0213918_1003573	Not Available	2195
Ga0213918_1004824	All Organisms → cellular organisms → Bacteria	1832
Ga0213918_1008714	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Actinopterygii → Actinopteri → Neopterygii → Teleostei → Osteoglossocephalai → Clupeocephala → Otomorpha → Ostariophysi → Otophysi → Cypriniphysae → Cypriniformes → Cyprinoidei	1272
Ga0213918_1008728	Not Available	1271
Ga0213918_1009641	All Organisms → cellular organisms → Bacteria → Proteobacteria	1200
Ga0213918_1017542	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Actinopterygii → Actinopteri → Neopterygii → Teleostei → Osteoglossocephalai → Clupeocephala → Otomorpha → Ostariophysi → Otophysi → Cypriniphysae → Cypriniformes → Cyprinoidei → Xenocyprididae → Xenocypridinae → Xenocypridinae incertae sedis → Anabarilius → Anabarilius grahami	861
Ga0213918_1019013	Not Available	825
Ga0213918_1025299	Not Available	710
Ga0213918_1039599	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfurellales → unclassified Desulfurellales → Desulfurellales bacterium	569
Ga0213918_1039905	Not Available	566
Ga0213918_1046528	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	526

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0213918_1000115	Ga0213918_10001152	F104784	MIPTKSAYLTVRVSDKTRAMFHAKAKKFGTPSEILRELVDAFIEDRVTIQPPVNGNPKEKLYVHRSKN
Ga0213918_1000206	Ga0213918_100020626	F019483	DFGAFPGANDASIAVTGQTGISATSKAEAFIMADDTSTDGHTANDHRYFDMLAGLTCGTPTDGTGFTIYATSQHKLQGKFALRWVWSD
Ga0213918_1000744	Ga0213918_10007446	F019483	MATGTGVAEIDFGAFPGANEASIAVTGQTGISATSKVESWVMADDVSSDTLHTAADHRYLPQFASFTCGTPTAGTGFTLYGRSVHKLQGKWKLRWVWAD
Ga0213918_1000801	Ga0213918_10008012	F008619	MAGLQTIFEIQQSMTVNNRRTVGQQVSRSGQLRVAQYLTSVPWVFTVTPHNYLYYPQVRDIIQAIDNHDRQLPEVISFSSSNLSWFTKMQGTATAATLNGTPAPNTQTLNLTSNGTFKAGDFIMIGGYTYKVTADSAGSTVTIHRPLIGSPTSGTTVYMGNDCTFNVVAEACPTYTLNPMTNGAFVQWTAPFVFREDITG
Ga0213918_1001450	Ga0213918_10014504	F011148	MAVFNKNSITQVSGFNNPCITGELVYQQKTYWNLVLTSEDGITPVNLTGATINAQIVRRELTNVQDTRYGLSFDIGNYTPTPTPIPLTISNRVDASGSFTLVIDDASWNLVDTDAEMAINSANGAGFSGRIKIGFPLNGVTPAEDNIIFLLFIVRSDGIVKV
Ga0213918_1002264	Ga0213918_10022645	F004133	MKYTTESTKQLIADYQAGVTVAELALALEVPERSIIAKLSSLGVYQKKQYLNKRGEVPTKKAEHIERIAELLQVNLELLESLEKVNKQVLVMIERNLEAKSDPKLS
Ga0213918_1003573	Ga0213918_10035734	F034114	MPMILIETSVAAGAVNSNVVSGSAFEFARTRQLMSCGVVQSATGGFATITSGPDIIAEEFSAPILTTYPIIPDNMYFTDVMEQGDRLVIRYRNPTGGALTVRALVQTSAV
Ga0213918_1004824	Ga0213918_10048244	F038145	MPYTAKQHRLFEAAAHNPAVAKSSGIPVHTAQKMASEGVKQQPQKLAAALRKKG
Ga0213918_1008714	Ga0213918_10087141	F079293	MGKKGDLSNFERGMVVGARRAGLSISQSAQLLGFSRTTISRVYKEWCEKGKTSSMRQSCGRKCLVDARGQRRMGRLIQADRRATLTEITTRYN
Ga0213918_1008728	Ga0213918_10087282	F019483	DFGAFPGANDASIAVTGQTGISATSKAEAFIMADDTSTDGHTANDHRYFDMLAGLTCGTPTAGTGFTIYATSQHKLQGKFALRWVWSD
Ga0213918_1009641	Ga0213918_10096411	F058950	LVNYCALQDINLVDCMKVAYDQIKHRRGTLMPNGVFIKEA
Ga0213918_1016936	Ga0213918_10169363	F074774	QRYVMQKRTPEEIAKECGVSVQIIYKQLNKFGLRR
Ga0213918_1017542	Ga0213918_10175421	F016472	NRLGPVEVHYMEKNPGMFSSKTFISFRLKKERHGHLG
Ga0213918_1019013	Ga0213918_10190132	F019483	VANAIGTAEIDFGAFPGSNDASVAVTGQTTISATSKVEAFVMADDTSTDGHTANDHRYFDMLAGLTCGTPTAGTGFTIYATSQHKLQGKFALRWV
Ga0213918_1025299	Ga0213918_10252992	F096738	MAKITRVAIYDMDGTIVDSSHRYRTITDENGTRIDLDHWRENEYRAMDDGLLPMFEQYR
Ga0213918_1039599	Ga0213918_10395991	F060712	MVDNITIINRALQRMGTRTTVTQSEYDNGTTNEAIQAALLFENSRDDLLRMAPWDCAFFAANLQYITSVNGTPENTSAASMFWERGIPMPPWTYEYQYPEDCLRACYIIPGQMTGYSGGT
Ga0213918_1039905	Ga0213918_10399052	F019483	MANAIGTAEIDFGAFPGSNDASVAVTGQTTISATSKVEAFVMADDTSTDGHTANDHRYFDMLAGLTCGTPTAGTGFTIYATSQHKLQGKFALRWVWSD
Ga0213918_1046528	Ga0213918_10465282	F019483	MANGQGTATLNFGAEPGSNEASVAVTGQASISATSKAEAYIMGDDTTSDHTAQDHRYVGLFMSLTCGTPTATTGFTIYARSTEKLNGTFSVRWVWVD