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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300021511 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0129088 | Gp0215209 | Ga0190284 |
| Sample Name | Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4869-18-1-2_MG |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 303118174 |
| Sequencing Scaffolds | 32 |
| Novel Protein Genes | 32 |
| Associated Families | 21 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales | 1 |
| All Organisms → cellular organisms → Bacteria | 7 |
| Not Available | 9 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium | 1 |
| All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Heimdallarchaeota → Candidatus Heimdallarchaeota archaeon | 2 |
| All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → unclassified Thermoplasmata → Thermoplasmata archaeon | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Olavius sp. associated proteobacterium Delta 1 | 1 |
| All Organisms → Viruses → Predicted Viral | 3 |
| All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → candidate division Zixibacteria → unclassified candidate division Zixibacteria → candidate division Zixibacteria bacterium | 1 |
| All Organisms → cellular organisms → Archaea | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 2 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Microbial Communities From Sediments And Microbial Mats In Various Locations |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Vent Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine hydrothermal vent biome → ocean trench → microbial mat material |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Mexico: Guaymas Basin | |||||||
| Coordinates | Lat. (o) | 27.0074 | Long. (o) | -110.591 | Alt. (m) | N/A | Depth (m) | 2001 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F011939 | Metagenome / Metatranscriptome | 285 | Y |
| F012874 | Metagenome / Metatranscriptome | 276 | Y |
| F014681 | Metagenome / Metatranscriptome | 261 | Y |
| F023595 | Metagenome / Metatranscriptome | 209 | Y |
| F029273 | Metagenome / Metatranscriptome | 189 | Y |
| F031503 | Metagenome / Metatranscriptome | 182 | Y |
| F036102 | Metagenome / Metatranscriptome | 170 | Y |
| F054047 | Metagenome / Metatranscriptome | 140 | Y |
| F060598 | Metagenome / Metatranscriptome | 132 | Y |
| F063362 | Metagenome | 129 | Y |
| F064356 | Metagenome / Metatranscriptome | 128 | Y |
| F072876 | Metagenome | 121 | Y |
| F076639 | Metagenome | 118 | Y |
| F081868 | Metagenome | 114 | Y |
| F085587 | Metagenome | 111 | Y |
| F091298 | Metagenome / Metatranscriptome | 107 | Y |
| F092080 | Metagenome | 107 | Y |
| F092844 | Metagenome | 107 | Y |
| F100259 | Metagenome / Metatranscriptome | 102 | Y |
| F100426 | Metagenome | 102 | Y |
| F104458 | Metagenome / Metatranscriptome | 100 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0190284_1000006 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales | 223015 | Open in IMG/M |
| Ga0190284_1000269 | All Organisms → cellular organisms → Bacteria | 34769 | Open in IMG/M |
| Ga0190284_1001872 | Not Available | 8924 | Open in IMG/M |
| Ga0190284_1002340 | All Organisms → cellular organisms → Bacteria | 7728 | Open in IMG/M |
| Ga0190284_1005200 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium | 4390 | Open in IMG/M |
| Ga0190284_1005637 | All Organisms → cellular organisms → Bacteria | 4128 | Open in IMG/M |
| Ga0190284_1006861 | Not Available | 3571 | Open in IMG/M |
| Ga0190284_1008566 | All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Heimdallarchaeota → Candidatus Heimdallarchaeota archaeon | 3019 | Open in IMG/M |
| Ga0190284_1008582 | All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → unclassified Thermoplasmata → Thermoplasmata archaeon | 3016 | Open in IMG/M |
| Ga0190284_1012198 | All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Heimdallarchaeota → Candidatus Heimdallarchaeota archaeon | 2346 | Open in IMG/M |
| Ga0190284_1012486 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Olavius sp. associated proteobacterium Delta 1 | 2311 | Open in IMG/M |
| Ga0190284_1014887 | Not Available | 2047 | Open in IMG/M |
| Ga0190284_1015031 | All Organisms → Viruses → Predicted Viral | 2035 | Open in IMG/M |
| Ga0190284_1015329 | All Organisms → cellular organisms → Bacteria | 2009 | Open in IMG/M |
| Ga0190284_1016304 | Not Available | 1932 | Open in IMG/M |
| Ga0190284_1016585 | All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium | 1910 | Open in IMG/M |
| Ga0190284_1022124 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium | 1591 | Open in IMG/M |
| Ga0190284_1022285 | All Organisms → Viruses → Predicted Viral | 1584 | Open in IMG/M |
| Ga0190284_1023479 | All Organisms → Viruses → Predicted Viral | 1530 | Open in IMG/M |
| Ga0190284_1030869 | Not Available | 1281 | Open in IMG/M |
| Ga0190284_1035718 | All Organisms → cellular organisms → Bacteria | 1167 | Open in IMG/M |
| Ga0190284_1037075 | Not Available | 1139 | Open in IMG/M |
| Ga0190284_1040618 | All Organisms → cellular organisms → Bacteria → FCB group → candidate division Zixibacteria → unclassified candidate division Zixibacteria → candidate division Zixibacteria bacterium | 1074 | Open in IMG/M |
| Ga0190284_1046602 | Not Available | 985 | Open in IMG/M |
| Ga0190284_1051900 | All Organisms → cellular organisms → Bacteria | 922 | Open in IMG/M |
| Ga0190284_1069986 | All Organisms → cellular organisms → Bacteria | 768 | Open in IMG/M |
| Ga0190284_1073453 | All Organisms → cellular organisms → Archaea | 747 | Open in IMG/M |
| Ga0190284_1076982 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 726 | Open in IMG/M |
| Ga0190284_1087145 | Not Available | 674 | Open in IMG/M |
| Ga0190284_1114368 | Not Available | 573 | Open in IMG/M |
| Ga0190284_1131723 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales | 527 | Open in IMG/M |
| Ga0190284_1137102 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 515 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0190284_1000006 | Ga0190284_1000006277 | F029273 | MDLLDEYLNILNEKPKRTTRSTISRNTKIKRATGQMGTAMARKKNDPIYKRMIYFRDNYFKYREMIRKKYSPRVRSRARR |
| Ga0190284_1000269 | Ga0190284_10002697 | F072876 | MEMSKQSYSDTMLMPVKRFQDYLKWKTDLEDEKQKMLLEGTS |
| Ga0190284_1001872 | Ga0190284_100187212 | F064356 | MIHGVKNKPVDESFTVSDIHGNLISGIDGTEFTVHVYDPTGTDVTASVSGFFTELGNGNYKYTFTPNLNKIWYVVVTHATYFPWGKTDDINVDETDLTGIYEIVIRTLGLSRHNIYIDEPTYDEFGNLVDARVRIYSDPASVGTVNDVIDTYRVTSDGTACGQFSFWRQVQV |
| Ga0190284_1002340 | Ga0190284_10023409 | F076639 | MKKTGTQSELEKAPICWMHEAIAYLGLDRLGLARPDLAVHRLIRKGALHPKKIGGHLAFDKAELQRLAANGDQKRGRGRPRKLA |
| Ga0190284_1005200 | Ga0190284_10052004 | F064356 | MIHGVKDQPVHENFTVSDSGGNLIAGIDTTTGFVPYVYDPTGTEVTGSVSGIFTELGNGNYRYTFTPNINGVWYINVTNQTYFPWGKNDDVYVDEADLTSVYEAVIRTLGLVHHNVYIDNTTYDEFGNMTAGRVRIYSDAASVGTNSNVIETYLITADGTECGKFSYWEQTKI |
| Ga0190284_1005637 | Ga0190284_10056377 | F072876 | LEKNVFACMEMSKQSYRETMLMPVKRFYNYLKWKNDLEEEKQKMMLEEVSKK |
| Ga0190284_1006861 | Ga0190284_10068614 | F029273 | MELLDEYLDILNEKPKRTTRSTISRNTKIKRATGQLGTAMARKKNDPLYKRMVYFRTQYFKYREMIRKKYTPRVRSRARR |
| Ga0190284_1008566 | Ga0190284_10085663 | F029273 | MSKIDPVTDHILNEIKTQSKTTISPQTKMKRASGQMASIEARKRNDPLYQRMQKYKDMYFKYRAMVHKKYGPRVRSKARR |
| Ga0190284_1008582 | Ga0190284_10085823 | F014681 | MRSFLDNTRAVIDLNIVLMIGVAFAALMVIAYIIWTLKAELVTTTTSAETNASIANITTGFDSAVNLLLVAVTIFILAIAISALLMLRGR |
| Ga0190284_1012198 | Ga0190284_10121982 | F029273 | MDDLLKEELKDLLSDEELSEARKRTSRTTVSRQTKIKRATGQMSSAAARKRNDPLYKRMIHFREKYYKYRAAIHKKYSPRVRSRARR |
| Ga0190284_1012486 | Ga0190284_10124862 | F011939 | MPEMTVEQIEEALRKEVQTIDKSVQLLAVKQSKKKEYYRVTLSKDGKSGSAELEKDVIKRYLSQQGKGKELRSALGKAVSHLSIRYQR |
| Ga0190284_1014887 | Ga0190284_10148872 | F092844 | MNIIAFFTNAGTPATGLNATVDIWKVDGTQVVTSQAMTEIAGGFYKYDFTTYDEDEDYCIRADGSATLTGSERYVFSTNETGGVGKILKIEKNKWEIKGNQMIFYDDDDTTVLYTFNLQNKAGSGTEKDVYKRVPV |
| Ga0190284_1015031 | Ga0190284_10150312 | F029273 | MSKGPEVDVLTQQILDEAPKRTTRHTVSRQTKIKRATGQLGTSMARKKNDPLYKRMVYFRTQYFKYREMIRKKYSPRVRSQARR |
| Ga0190284_1015329 | Ga0190284_10153292 | F023595 | MVDFGLQQGLSDFETTGIVSYVEDFKRAKTPLRAKRCRLWMDIT |
| Ga0190284_1016304 | Ga0190284_10163043 | F031503 | MDKREMQELFKATAEIHTPEGLAAYRAFAAALTTPILQKIELESIMRRLFAVERLAPGAQAVYPVAEDFEVPVWVLPGLGYMAQNFIEGIGEEVYVPTFAINSSADWKVTYARDSRVDIAQRAAARVAKDLANYEEECGWRVIMPAATASFSGKGLLGPRPAPIYEISPGATGAGYLSKE |
| Ga0190284_1016585 | Ga0190284_10165854 | F100259 | MAQNYLSGGGTVCLHAFEDMDGWTKVPASHTKSDQTYMPFGQGVEVTITRTNNAERIFGVGARNATATINKQFGGSFTINGVLSNAYWLLGVLGANADGGEAGAYTHTYTEADILPSFTTTQSFELGTTDFATDLIGCIINTCTISASVNEALKFTLEGIYRYENLGTTYVADLADTEPVFTFAHGSIEMPDGTDIAAIQSFELIINNNVEAVYGAGSRFMTAVVAKNREYNFSCTAAFNDYT |
| Ga0190284_1022124 | Ga0190284_10221241 | F091298 | MLEVISPAQALKRLSIGESIQDTRVTGLLDLDPLVVSRWLCGEDMRGIYQPIILHHCTLDGLDLEGRTFYEMVELVGCRIVAAYFKQAYFYSSLLVEDCVFERDFEGQGIQSDGRMVIHNTVFAGHADFSGISLRNRVNLLDVSFPGGTNLLHVLVDG |
| Ga0190284_1022285 | Ga0190284_10222853 | F064356 | MIHGVKDKPVDEHFTVSNTAGNLISGIDTTEFTVYTYNPSGTDLAGSLSDFFTELGDGSYKYTFTPNVNGIWYVNVTHPTYFPWGKTDDINVDETDITGVYEIVRRTLGLVHHNMFIDEAIYDEFGNMTSARVRIYADAASVGTNSNVVETYLITSDATACGQFDFWKQVVIP |
| Ga0190284_1023479 | Ga0190284_10234791 | F085587 | MALGIEQIDDFVAGIHQKFAGEDRLAAQDISLPLQEYKYASRLFSGNLKKDTMSTSQCKWKVKVDTNDNFQVVGLYHRDSSGRVNTLSEGELKWGLTTNNYHYDIDEEIFQTGGRQIYDYLEGLEQDLMTSFYTGMEGLMFGDGPTSPTQSPFPPVSLLWWITATDDSTSENNSEEGFNGYEPVGWGSNGVGGISCSTYEHWRNRTFPYTKVDRVDFVEKTINSMDLCQFSPPVQRPDIVDQKRHDWELLTTHSRLAQARQLLQLGNDNIGDDMAAHSGTVYIRGVPLTWVPAWTNTASANARTDGIILGVNWATFKAYYASGRQMRKRKAFQHPE |
| Ga0190284_1030869 | Ga0190284_10308691 | F036102 | MDRQEMMELFRATAEIQTPEGLAAYRAFAAALTTPILQKLELESIMRDLFAVERLGPGAQAVYPIAEDFEIPVWVLPGLGYVAQNFIEGIGEE |
| Ga0190284_1035718 | Ga0190284_10357183 | F104458 | MKRGWIAKYENGTTINENQMDWKEIPKVGIVQISLLFDGKRWDINNKVAYVQKKRASVVPGVADSFMIESRSIGYYEGTKKVWY |
| Ga0190284_1037075 | Ga0190284_10370751 | F060598 | GKIGNTGRVLKAEELVLAFDLDAKRWLALRVYQGAKKLSLSLPEIVAELRRHRGEGKGCWRLFFDKGGYKGQIFRDLAAMEDVHFYCPAVRYPDNVAQWERLMEEDFDPESFVFDKHADLPPEERPVYRLADTEMTVNVWENRRVVGTVTLRAVVIHDPQGQKPAERWPVVYLTDDRQIDARALANEFGDHWGQEFAHRIGKHDLCLDILPPGYTLTSQRDEEGQLQRQVEYDTTAFFLSAWLRCLVFNLMSLFAQELEGEYTRMWAGTLLRKFIRRPATLYLVGNELHVVFDPFPDQEALRPLLDRLNAKRVALSWLNGLVVQFSIAQDEPLHPLTEPEKRQRLFGDD |
| Ga0190284_1040618 | Ga0190284_10406183 | F064356 | MIHGVKDQPVHENFTVSDKHGNLITGIDTTAGFTSYVYNPLGAEVTGSVSGFFTELGDGNYRYTFTPDDNGVWYVNVTNQDYFPWGKNDDVYVDTSDLSGIYEIVRRTLGLVHHNMYIDQATYDEFGNMISARVRTYDDA |
| Ga0190284_1046602 | Ga0190284_10466022 | F063362 | MANFIVGIISLTLGVVVLAGVFITTVKGTNTTGWSAGEVALWGLLTIASIAGLVYGVMNVFGLA |
| Ga0190284_1051900 | Ga0190284_10519001 | F100426 | MARNRIIYASQSVWCNGEVLYRVQSLGSTTTFTSEDIFELGHLDIIDVVDDVPAVAVTLNTNDFGDVRTLA |
| Ga0190284_1069986 | Ga0190284_10699861 | F092080 | MQDKRVTIRIPFEIWKALRELQTVGKISSIQQAAVTGMNKLIESLKRGEEDNQRDAAKKRVLNVLVKEKPLGNWEDIHRERTEADADRS |
| Ga0190284_1073453 | Ga0190284_10734532 | F064356 | MIHGERNVPVDENFTVSDNGGNLVSGIDSTTFTVHVYDPTDAEVTVSVSGFFTELGDGNYQYTFTPNLNGVWYVVVTHPIYFPWGKTDDVKVDEGSQTQIYDAVIRTLGLVHHNIYIDNPTYDEYGNMTSGRVRIYSDAASVGTNNNVIETYLITADGTECGKFTYWEQTVL |
| Ga0190284_1076982 | Ga0190284_10769822 | F011939 | MPRLTIQLAEDTLRDEVHRLDKRVQLIGVSQGKKKDEYRVTLLKDGRTGSASIKKDIIKEYVAAEGKGNALRKALGKAVSHLSIQYR |
| Ga0190284_1087145 | Ga0190284_10871451 | F036102 | MERQEMQELFKATAEQTPEGQAAFRAFAAAITTPILQKIELESIMRQLFAVEQLAPGAQAVYPVAEDFEIPVWVLPGLGYMAQNFIEGIGEEVFVPTFAINASADWKVTYA |
| Ga0190284_1114368 | Ga0190284_11143681 | F081868 | MVNKKEETEKVMPVVSANSYGISAAIWNNTNKAGKEYQSISLNGSTKQPDGTYKNRTIFFPSDLENLIASLTELKE |
| Ga0190284_1131723 | Ga0190284_11317232 | F054047 | LKDSVGILRLGSNIGHGLFVGWVESAGLGFSAGGPTYLPAIFVLSAKPNKM |
| Ga0190284_1137102 | Ga0190284_11371021 | F012874 | MPAKAGIQKYLNILDSRLRGNDAKERFETFYDFVNIQ |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |