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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300021504 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0129088 | Gp0215269 | Ga0190344 |
| Sample Name | Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-13-2-3_MG |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 241930256 |
| Sequencing Scaffolds | 17 |
| Novel Protein Genes | 18 |
| Associated Families | 16 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 7 |
| All Organisms → cellular organisms → Bacteria | 2 |
| All Organisms → Viruses → Predicted Viral | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium | 1 |
| All Organisms → cellular organisms → Archaea | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria | 1 |
| All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon | 2 |
| All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Caldilineae → Caldilineales → Caldilineaceae → Litorilinea → Litorilinea aerophila | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Microbial Communities From Sediments And Microbial Mats In Various Locations |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Vent Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine hydrothermal vent biome → marine hydrothermal vent → microbial mat material |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Mexico: Guaymas Basin | |||||||
| Coordinates | Lat. (o) | 27.0114 | Long. (o) | -110.5956 | Alt. (m) | N/A | Depth (m) | 2011 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003492 | Metagenome / Metatranscriptome | 483 | Y |
| F007772 | Metagenome / Metatranscriptome | 345 | Y |
| F008424 | Metagenome / Metatranscriptome | 333 | Y |
| F013419 | Metagenome | 271 | Y |
| F014622 | Metagenome / Metatranscriptome | 261 | N |
| F017299 | Metagenome / Metatranscriptome | 241 | Y |
| F019142 | Metagenome / Metatranscriptome | 231 | N |
| F036354 | Metagenome / Metatranscriptome | 170 | Y |
| F036471 | Metagenome / Metatranscriptome | 170 | Y |
| F040581 | Metagenome / Metatranscriptome | 161 | N |
| F045994 | Metagenome / Metatranscriptome | 152 | Y |
| F064356 | Metagenome / Metatranscriptome | 128 | Y |
| F074895 | Metagenome | 119 | Y |
| F080236 | Metagenome / Metatranscriptome | 115 | N |
| F094909 | Metagenome | 105 | Y |
| F104423 | Metagenome | 100 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0190344_1000883 | Not Available | 12261 | Open in IMG/M |
| Ga0190344_1001826 | All Organisms → cellular organisms → Bacteria | 7395 | Open in IMG/M |
| Ga0190344_1015297 | All Organisms → Viruses → Predicted Viral | 1854 | Open in IMG/M |
| Ga0190344_1022693 | Not Available | 1439 | Open in IMG/M |
| Ga0190344_1025019 | All Organisms → cellular organisms → Bacteria | 1350 | Open in IMG/M |
| Ga0190344_1025643 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium | 1329 | Open in IMG/M |
| Ga0190344_1034189 | All Organisms → cellular organisms → Archaea | 1097 | Open in IMG/M |
| Ga0190344_1039882 | Not Available | 989 | Open in IMG/M |
| Ga0190344_1045586 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria | 905 | Open in IMG/M |
| Ga0190344_1050242 | All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon | 850 | Open in IMG/M |
| Ga0190344_1055707 | All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon | 795 | Open in IMG/M |
| Ga0190344_1060246 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Caldilineae → Caldilineales → Caldilineaceae → Litorilinea → Litorilinea aerophila | 756 | Open in IMG/M |
| Ga0190344_1074711 | Not Available | 660 | Open in IMG/M |
| Ga0190344_1074718 | Not Available | 660 | Open in IMG/M |
| Ga0190344_1089093 | Not Available | 591 | Open in IMG/M |
| Ga0190344_1100892 | Not Available | 547 | Open in IMG/M |
| Ga0190344_1103829 | All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon | 537 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0190344_1000883 | Ga0190344_10008833 | F064356 | MINGVKNQPVDEHFTVVDANGNLISGLDTTAAFTAYIYDPNGVNVTNSVNPEFTELGDGNYKLTFTPNVNGVWYVNVTHPTYFPWGKNDDIYVNETDLTEVYDIVRKTLGLVHHNMYIDQATYDEYGNMIGARVRIYDDAANVGTDIGVIETYRIEADSEACGQFSYWLQVKV |
| Ga0190344_1001826 | Ga0190344_10018264 | F104423 | MMSKPVREMKAHRIRKAESLYNKERKHIFLEVEKSRWLEIESLDGVTYDSIQKFVENENKTGIKIVGFTDKHFQYGTIKDWYHSGIIMDIKKKNDI |
| Ga0190344_1015297 | Ga0190344_10152975 | F040581 | NNMEFLENGNFNGIKFLGKRRVYNGYLNKEQSWKEYQQWAEKNIY |
| Ga0190344_1022693 | Ga0190344_10226934 | F019142 | MKKLGAWLIKTSHAIARWWGKLTHGVKCKWNKIIFAISFKMKDCSNGEKI |
| Ga0190344_1025019 | Ga0190344_10250193 | F036354 | GEGPVKRKGVVARRGLKEACSKGASRWTRTGYEAYGVGRAGW |
| Ga0190344_1025643 | Ga0190344_10256432 | F094909 | MFNEKVLDWIEGYVLTRMLTFGDFVGTVNRTELMFDLDTSSDYFRIYEGQRIQALSLPVKSRRLCTLLGEIEACFQRGWKLLDAQEWTEADFNEVFELSKQISAEIMALREEYKRDGSERRSDQVGINLGGSQ |
| Ga0190344_1034189 | Ga0190344_10341893 | F003492 | MDKKLLTDDIIIGKLEKDGFMEEPDGPWLLEYIEEQHGGKLDKTSGYVDDRHSLKIYSESTYDGYDIWWCTYDEKPYISQDGFYYEDYTEWSSRALDELTSGSDVWVEPHLWDDMEYEFNYELEQWWQDVYQELFDE |
| Ga0190344_1039882 | Ga0190344_10398825 | F008424 | LYLTLIAGICFFTGVFYTYYKIDQRLWNEDILKARDIETRYLNYPTKRNYKRDDLERIIYGKER |
| Ga0190344_1045586 | Ga0190344_10455862 | F074895 | MARKKKDKPWHLKFTWTLSILMLLLVFGFFYQSFEEMLKIAPVQVAVERIMESE |
| Ga0190344_1050242 | Ga0190344_10502421 | F017299 | MNKIEPTKITLEYYNKKISTEVDHSDVTLEKLYDMWMEIVRAMGYHENTIKEFYE |
| Ga0190344_1055707 | Ga0190344_10557074 | F007772 | MCTKSYTLLKISWRLFDKHYTKLTDEQKSKVLDVYYDFY |
| Ga0190344_1060246 | Ga0190344_10602461 | F094909 | VLSRMLIFGDFVGTVKRSDLIFDLDTTSEYFRKHEGQRIQSLSLPVKSRNLSTLLGEIEDCFQKGWILMDNGEWTEAEFDRVYELSRQISAEIMVLREQFDQ |
| Ga0190344_1074556 | Ga0190344_10745562 | F045994 | MAELLTDEIIIEKLNEDGFMQEPDGPWILEYINEHHGGKLDTTSDYIDNNYTLKIYSESTADCYDIYWCTHEERPYISQDGYYYEDYAEWSTQAVEQLAHGDDVWVD |
| Ga0190344_1074711 | Ga0190344_10747111 | F014622 | VYGFVAAILVLAITFMVIMLTSRFAKAGYGIMYGSLFIKMVTLSAFTLAVKPHLGDAIIYAAIVLISIMFSNVYLIIKIKQ |
| Ga0190344_1074718 | Ga0190344_10747181 | F019142 | INNMKKLGAWLIKTSHAIARWWGKLTHGVKCKWNKIIFAISFKMKDCSNGEKICTCNK |
| Ga0190344_1089093 | Ga0190344_10890932 | F080236 | MNNIYDKKFELYLISKGYDLDTISLNECLKEIKIWKKNTTNA |
| Ga0190344_1100892 | Ga0190344_11008921 | F013419 | MRESKYSFLYRNSDGHVMRPESFLNINKGRTLSRSQLRMLGIEKIKNPSYKRQATSGKPQAAST |
| Ga0190344_1103829 | Ga0190344_11038291 | F036471 | MQNRLNLWQRLKPEYKKQLKKSNKKYSYKMASIKDELKNTYWFTDVKYGTAFDVMTPNKLDFLGDAFNA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |