3300021494: Hydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-04-2-3_MG

Overview

Basic Information

• IMG/M Taxon OID: 3300021494
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0129088 | Gp0215254 | Ga0190329
• Sample Name: Hydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-04-2-3_MG
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 132448079
• Sequencing Scaffolds: 4
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → Viruses → Predicted Viral	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Microbial Communities From Sediments And Microbial Mats In Various Locations
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine hydrothermal vent biome → marine hydrothermal vent → sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Mexico: Guaymas Basin
• Coordinates
  • Lat. (^o): 27.0114
  • Long. (^o): -110.5956
  • Alt. (m): N/A
  • Depth (m): 2011

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002525	Metagenome / Metatranscriptome	552	Y
F009582	Metagenome	315	Y
F016235	Metagenome	248	Y
F027047	Metagenome	196	Y
F044784	Metagenome	154	Y
F054403	Metagenome	140	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0190329_1001143	Not Available	6620
Ga0190329_1004004	All Organisms → Viruses → Predicted Viral	2548
Ga0190329_1015367	Not Available	1126
Ga0190329_1016138	All Organisms → Viruses → Predicted Viral	1094

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0190329_1001143	Ga0190329_10011434	F044784	MPKEFVGWEVELKDGTIIREGTMDWKKVPKKDIQRLSLFHFNNRRWDLTGKQAYFIKTRASMVPGVKESLRIEERTIGYYEGAQKIHYTVSESTGKFKMTVVKG
Ga0190329_1001383	Ga0190329_100138313	F054403	MALDREDRLFIKEVGKKAARVLKTKNLRLWNEFKRRCDENGESPESVLGNYLYRFAKSILDEDGEFAEDLIGRTIRISALARKEGVLESLDEIIAVKKKLEDMGSSKIDKLIEKMIEVEISKAAITPMDMIRGGASEEKEGAVVLDENTLASLPPEQLELLEQ
Ga0190329_1004004	Ga0190329_10040042	F027047	MDWYSLGIAVFSAIVYSLTMYVKKHLSSENPQDFDTAKFVTTVIWGAIVGVVLQMSGVPITEQNVEEQFAAYTGLIALTENIVKAIIRAIKS
Ga0190329_1015367	Ga0190329_10153673	F009582	MRERGRRREFEGGTGRAVKEARVDVVLQRVEEEIGDEINAYPTHVRRYGVNNIFQRTFAYLLGWQSNGKPRKVGVTSGGLLKVAVSGAGFEQIDTLEGTAGVNWSSALSFAWTPNRIRFEALDYPYLAKFSIDGVTWSDEVYVDGGTPRDFDVNARYVKVRRYGGTNAKYFIIGMR
Ga0190329_1016138	Ga0190329_10161383	F016235	MSEGKISSSPPLFSHKKGKHRQGYQRCVEYVGIDKNDDYYGRGFPLCAVVKFKIPVHRYTPRTYEIARLLATLKILYGEEYMEELLAWTELEYVRMRREGKWLTI
Ga0190329_1048132	Ga0190329_10481322	F002525	VDSAWEQEKLEAKKLLENAAESHLSGARFVGRSLLRNI