3300021486: Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-13-4-5_MG

Overview

Basic Information

• IMG/M Taxon OID: 3300021486
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0129088 | Gp0215271 | Ga0190346
• Sample Name: Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-13-4-5_MG
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 119658292
• Sequencing Scaffolds: 7
• Novel Protein Genes: 8
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1
Not Available	4
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Microbial Communities From Sediments And Microbial Mats In Various Locations
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Vent Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine hydrothermal vent biome → marine hydrothermal vent → microbial mat material
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Mexico: Guaymas Basin
• Coordinates
  • Lat. (^o): 27.0114
  • Long. (^o): -110.5956
  • Alt. (m): N/A
  • Depth (m): 2011

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000352	Metagenome / Metatranscriptome	1247	Y
F036294	Metagenome / Metatranscriptome	170	Y
F036471	Metagenome / Metatranscriptome	170	Y
F048033	Metagenome	148	N
F050821	Metagenome	144	N
F059532	Metagenome	133	N
F093027	Metagenome	106	N
F102576	Metagenome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0190346_1008460	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1901
Ga0190346_1019408	Not Available	1054
Ga0190346_1023613	Not Available	918
Ga0190346_1034693	Not Available	709
Ga0190346_1039906	All Organisms → cellular organisms → Bacteria	645
Ga0190346_1055995	Not Available	517
Ga0190346_1058871	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	501

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0190346_1008460	Ga0190346_10084603	F036294	MDRGSSDEAIVGVKSVANEDAVTYPRVKLPASDREVGAEGWNM
Ga0190346_1019408	Ga0190346_10194082	F102576	LMNDLLMLEKYFPGGSLEGGIALANRLDWGLSVQMSGDDYVVSSGNEPILRTESKDALQSFIYGLGLAYAILPEGLFESLEKALREL
Ga0190346_1020120	Ga0190346_10201202	F059532	MRNILLLGDLHCGSTEGLWHPDFVTREGQKIKLSPLQEELYEKWLLLQEKLPDYEAVFLLGDITHGLGSKDFGKDVIDCDLHDQLQCAIKLLKPVTKGKKVVVITGSRYHSSIDYDIDRGLAEVLHAKFGGAISNIRLKGTDVVINIAHGIGSRPIYTGTRMNQDVFNAILTEHLLKMPEVSVIIRAHFHIFSYFAIYGKHFIYIPGWNAIRKGRFITRWYFRQPDIGAVLLSIDNDNNVYVKSYLFKLKSERKNIYVL
Ga0190346_1023613	Ga0190346_10236132	F050821	MIVKDMYCDYCKQETLHECQSNELWRCVQCQNTRFEVIDIPQNEIDWEKPVRYLWRSGDIAYVTLALAPNVLKLDEMKELLEGRRIRIPLFRIKDKFLPKYY
Ga0190346_1034693	Ga0190346_10346932	F000352	MPTIKLTDNDCIFVHYVLRMYAQQTPGLDQEDKDEIREVARKFREYE
Ga0190346_1039906	Ga0190346_10399062	F048033	MIVTKLGDMIVVNVDKDNFYCEREGSNLVDIWEEHARYIGEEDTLYVRQVEGEKLTEDMQKLIKNFRNAGKTIEYMDKDRYD
Ga0190346_1055995	Ga0190346_10559951	F093027	ILIALVLCIGSVSAFSSIDYSIQASDAVVSVNMKYSNILENETILGSQVVRLDHMDVTSAGMIMGDDTGVALNNTLRAVPVRNCLISSGMINQNFASAVRTNESYDLGVTGFRADGRMMDLASDVQAESGALSHVVRGQVAGSVGMGLITQTPTNRFESIVHSRSALQNVVM
Ga0190346_1058871	Ga0190346_10588712	F036471	MQNRLNLWQRLKPECKEAIKEQYKKYTYRRADIKEELKSKEFFTEVSYGIAFDIMIPNKLSFLGDAFNPQVHE