Sample 3300021277

Basic Information
IMG/M Taxon OID	3300021277 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0114516 \| Gp0225736 \| Ga0210352
Sample Name	Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Washington, United States ? S.487 (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	42793975
Sequencing Scaffolds	50
Novel Protein Genes	60
Associated Families	43

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	29
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Naviculales → Amphipleuraceae → Amphiprora → Amphiprora paludosa	2
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Fragilariophyceae → Fragilariophycidae → Rhabdonematales → Grammatophoraceae → Grammatophora → Grammatophora oceanica	1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Naviculales → Naviculaceae → Fistulifera → Fistulifera solaris	6
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea	2
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Eukaryota → Sar	3
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	3
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Naviculales → Phaeodactylaceae → Phaeodactylum → Phaeodactylum tricornutum	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pseudanabaenales → Leptolyngbyaceae → Leptolyngbya	1

Ecosystem Assignment (GOLD)
Name	Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	estuarine biome → estuary → sediment
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	USA: Washington
Coordinates	Lat. (^o)	46.302	Long. (^o)	-123.036	Alt. (m)	N/A	Depth (m)	0
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F000068	Metagenome / Metatranscriptome	2731	Y
F000577	Metagenome / Metatranscriptome	1015	Y
F001679	Metagenome / Metatranscriptome	653	Y
F007629	Metagenome / Metatranscriptome	347	Y
F012678	Metagenome / Metatranscriptome	278	Y
F013273	Metagenome / Metatranscriptome	272	Y
F014821	Metagenome / Metatranscriptome	259	Y
F017093	Metagenome / Metatranscriptome	242	Y
F017955	Metagenome / Metatranscriptome	237	Y
F019586	Metagenome / Metatranscriptome	228	Y
F021217	Metagenome / Metatranscriptome	219	Y
F021307	Metagenome / Metatranscriptome	219	Y
F022124	Metagenome / Metatranscriptome	215	Y
F022790	Metagenome / Metatranscriptome	212	Y
F023254	Metagenome / Metatranscriptome	210	Y
F024483	Metagenome / Metatranscriptome	205	Y
F027105	Metagenome / Metatranscriptome	195	Y
F027700	Metagenome / Metatranscriptome	193	Y
F030135	Metagenome / Metatranscriptome	186	Y
F031322	Metagenome / Metatranscriptome	182	Y
F033314	Metagenome / Metatranscriptome	177	Y
F038082	Metagenome / Metatranscriptome	166	Y
F038934	Metagenome / Metatranscriptome	164	Y
F042669	Metagenome / Metatranscriptome	157	Y
F046120	Metagenome / Metatranscriptome	151	Y
F052976	Metagenome / Metatranscriptome	141	Y
F057770	Metagenome / Metatranscriptome	136	Y
F058570	Metagenome / Metatranscriptome	134	N
F060561	Metagenome / Metatranscriptome	132	Y
F061006	Metagenome / Metatranscriptome	132	Y
F062310	Metagenome / Metatranscriptome	130	Y
F062365	Metagenome / Metatranscriptome	130	Y
F063220	Metagenome / Metatranscriptome	129	Y
F065810	Metagenome / Metatranscriptome	127	Y
F075504	Metagenome / Metatranscriptome	118	Y
F076676	Metagenome / Metatranscriptome	117	Y
F076772	Metagenome / Metatranscriptome	117	Y
F077370	Metatranscriptome	117	Y
F078221	Metagenome / Metatranscriptome	116	Y
F079410	Metagenome / Metatranscriptome	115	Y
F081955	Metagenome / Metatranscriptome	113	Y
F089621	Metagenome / Metatranscriptome	108	N
F094641	Metagenome / Metatranscriptome	105	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0210352_100469	Not Available	607	Open in IMG/M
Ga0210352_103214	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Naviculales → Amphipleuraceae → Amphiprora → Amphiprora paludosa	505	Open in IMG/M
Ga0210352_103835	Not Available	627	Open in IMG/M
Ga0210352_104780	Not Available	501	Open in IMG/M
Ga0210352_113471	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Fragilariophyceae → Fragilariophycidae → Rhabdonematales → Grammatophoraceae → Grammatophora → Grammatophora oceanica	543	Open in IMG/M
Ga0210352_115626	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Naviculales → Amphipleuraceae → Amphiprora → Amphiprora paludosa	534	Open in IMG/M
Ga0210352_115692	Not Available	562	Open in IMG/M
Ga0210352_120332	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Naviculales → Naviculaceae → Fistulifera → Fistulifera solaris	614	Open in IMG/M
Ga0210352_122994	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Naviculales → Naviculaceae → Fistulifera → Fistulifera solaris	701	Open in IMG/M
Ga0210352_123751	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Naviculales → Naviculaceae → Fistulifera → Fistulifera solaris	1040	Open in IMG/M
Ga0210352_123990	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea	553	Open in IMG/M
Ga0210352_125798	Not Available	528	Open in IMG/M
Ga0210352_130647	Not Available	760	Open in IMG/M
Ga0210352_131892	All Organisms → cellular organisms → Bacteria	691	Open in IMG/M
Ga0210352_133419	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Naviculales → Naviculaceae → Fistulifera → Fistulifera solaris	636	Open in IMG/M
Ga0210352_136831	Not Available	822	Open in IMG/M
Ga0210352_139678	All Organisms → cellular organisms → Eukaryota → Sar	682	Open in IMG/M
Ga0210352_139987	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	1453	Open in IMG/M
Ga0210352_142118	Not Available	532	Open in IMG/M
Ga0210352_142924	All Organisms → cellular organisms → Eukaryota → Sar	835	Open in IMG/M
Ga0210352_145112	Not Available	523	Open in IMG/M
Ga0210352_148061	Not Available	795	Open in IMG/M
Ga0210352_149032	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	888	Open in IMG/M
Ga0210352_151162	Not Available	545	Open in IMG/M
Ga0210352_154397	Not Available	715	Open in IMG/M
Ga0210352_156783	Not Available	642	Open in IMG/M
Ga0210352_159017	Not Available	840	Open in IMG/M
Ga0210352_159246	Not Available	504	Open in IMG/M
Ga0210352_163119	Not Available	663	Open in IMG/M
Ga0210352_165021	All Organisms → cellular organisms → Bacteria	1039	Open in IMG/M
Ga0210352_166253	Not Available	506	Open in IMG/M
Ga0210352_169071	Not Available	742	Open in IMG/M
Ga0210352_171226	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Naviculales → Naviculaceae → Fistulifera → Fistulifera solaris	573	Open in IMG/M
Ga0210352_174151	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Naviculales → Phaeodactylaceae → Phaeodactylum → Phaeodactylum tricornutum	536	Open in IMG/M
Ga0210352_174708	All Organisms → cellular organisms → Eukaryota → Sar	505	Open in IMG/M
Ga0210352_175111	Not Available	694	Open in IMG/M
Ga0210352_175294	Not Available	645	Open in IMG/M
Ga0210352_175787	Not Available	522	Open in IMG/M
Ga0210352_178264	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	588	Open in IMG/M
Ga0210352_178842	Not Available	864	Open in IMG/M
Ga0210352_181243	Not Available	533	Open in IMG/M
Ga0210352_181589	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea	561	Open in IMG/M
Ga0210352_182544	Not Available	584	Open in IMG/M
Ga0210352_183444	Not Available	895	Open in IMG/M
Ga0210352_187017	Not Available	670	Open in IMG/M
Ga0210352_187019	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pseudanabaenales → Leptolyngbyaceae → Leptolyngbya	3184	Open in IMG/M
Ga0210352_187649	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Naviculales → Naviculaceae → Fistulifera → Fistulifera solaris	670	Open in IMG/M
Ga0210352_189526	Not Available	523	Open in IMG/M
Ga0210352_192947	Not Available	555	Open in IMG/M
Ga0210352_198153	Not Available	517	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0210352_100469	Ga0210352_1004691	F057770	GYKLECDDDKKTSRFSLNHKMRKSGSVLLRGMTRGGLCYTRPAVPPMLTTEGTAEMSLDMADRVAISMVEDHPKNSYRHEMKLHALSAKAERLLWHQRLAHCGDKQLCRAHMFSNGVPEITRGKDSALDNCPVCLAANMRSRNRGNGETRTATKPGQGLSLDFSFAGQHSKNATDPKKMRINDYMGIHGETCYLLLYDHATE
Ga0210352_103214	Ga0210352_1032141	F033314	MSAGTVDFVVGVDKKLWIGSGLFENCKSFFGAKCAVFGSECFDHTDWIALPEDAAGYSAALISWGWVGVIELGCKMFSVGVRFLALID
Ga0210352_103835	Ga0210352_1038351	F013273	MATRKTSKELQEEIDALTDQLAATLRLEIADLTRQAEEGEIQYQSLLRKMIGRRILITKKNDPLFGMEAIITGPRGQSKKPMYWWFQTTTGIKQYKARTSFKLLPLDDVVPPSDSAL
Ga0210352_104780	Ga0210352_1047801	F021217	DGGSQASTTNDKSVLWGFREYSKKNPCRVRLICADGKTPIVPEGYGAVRIPANNAEGCVPIKCYYTPDIPNFMLSPNSFKRLLGKHCNGCALECNDDKKTFHFSVNHKKRKSGSLLLFRTTRGGLCYTRSAVPPMPTTEGTAEMSLDAANKAAILMVKDHPKNSHQ
Ga0210352_109470	Ga0210352_1094701	F014821	VNALQSEAISPEERALPRFSRRALKRLPTWGLWHKNEVEQLDQMKALGMFGAPIKLPEGGILMRFHWQYRIKVNGKRRSRLCCSGSPRAAPEVHSTTNTYASCLEHPVFRLFIALCAANDLTVYGGDAKDA
Ga0210352_113471	Ga0210352_1134711	F094641	VVYEHGVSFSQNYIYQKGVKKFGERGQKAAGKELDQLHQRNCYTPIDVSAMTPEEKAQAMEALMFLQEKKDGTVKGRMVYNGKPTREWLSREDSASPTAALESIFLTSIIDAKEERDVMSADVPNAFIQTPMPDDNKKVIMKITGVLVHLMVEQAPEVYGQHVVYENGKRVLYVTVLKAL
Ga0210352_115626	Ga0210352_1156261	F033314	GGLLYTPMETWSMSAGTVDFVVGVDKKLWIGSGLFENCKSFFSAEGAVFGGESFDHTDWIALPEDAAGYSVALVSWGWVDVMELGCKMFSVGVRFLAFFD
Ga0210352_115692	Ga0210352_1156921	F057770	KHYNGYTLECDDEKKTFQYTVNHKKRKSGSLLLFGKTRGGLCYTRSAIPPMPMTEGTAAMSLDAADKAAISMIEDHPENSYQHELKLHTLSSKAERLLWHQRLAHCGDEQLCRAHMYSDGVPEIKLGKDSALDSCPVCLAANMKSRNRGDGETRTATEPGQGLSIDFSFAGQHSKNATNPEQMRVND
Ga0210352_116505	Ga0210352_1165051	F038082	QGHQDLRPRERRHPIPPVTISQHWSRLLTLKQNSDEDPPTFAKRFQQQLDTVQGYVGTTFTDGFAEQMPEYKANAYKHDAGKITTLLATHVTDDAARQALATDLHALFSLYKPKETQAQLDLKAQTRSEFEAYLFLWSASKAKYGSLLKTLQQQYSLGQVNYPESIHKAVDILSQ
Ga0210352_118471	Ga0210352_1184711	F076772	SDELSHRAYVADVKENSTADKMYASHKSTLKNVKGAYLVGINGKKVFSKEDAISMLRQLHDERAENLQLELAIERKLSSAEAWRAVAEHNIMDPSAVPDVDHHHQLTLADIRSISAVRYPHLDFSEASISTEEMEMVVQAIQSQAITPAEQAIGRFTRRKLRSLSTWDQWRAGEHKQLDHFHDLKMYGEPVRKPPGAIVLRPHWQYSIKRDGTRRSRNCCDGSPRSAPLLHGIASTYSSCVEQPVQRLFFALAARENYRVYGGDAQ
Ga0210352_120332	Ga0210352_1203321	F079410	PVKFWPCAFRHFLRIKNSALPRQGSTESAHQKLHGEKDDLGLLRTFGCRLWVKILAWQNRAKYIQDTKKGIFLGYRTNTLKNVVWYDPLTDRVKYGYHVRFDEGFNDLPLAQLPPNVVLMDWHEERVPAETLTITIPPFTTSEHPFFHEDDVTVKVVCNTDMYGFELSEDDCMKQVYISGLKKDGKGTKGRRSCNAMCSSERAT
Ga0210352_122994	Ga0210352_1229941	F022124	DAIQAQIDTGAHVSCTDQLHMLHGYRKFTRSRPSPVKLMPATVDSDAVPKGIGYLHVPAKNAQGYLAVPTFYTPCLRTTVIDERDLVKAAKVSVKDIRSDSITKHKDAGTFTYHARHRMKSSKDVIVHGVLIDDKCYTGALISPDLSPSDPKATPSTSSILAMESDPDFAEQCRKATILAVHGYHEAVETQLRDELTKLPMQFHTLPFHEYIQANTPVTTIKAATERLLWHQR
Ga0210352_123751	Ga0210352_1237512	F062365	LADDDPSCNMQKPSLSSVDDENDGDIYKEGRDDIMIMSSINAVDIHRISWSPASDVQVESVDIQCPDDNPDAIRAQIDTGAHVSCTDQLHMLHGYRKFTRSRPSPVKLMPATVDSDAVPKGIGYLHVPAKNAQGYLAVPTFYTPCLRTTVIDERDLVKAAKVSVKDIRSDSITKHKDAGTFTYHARHRMKSS
Ga0210352_123990	Ga0210352_1239901	F000577	ENFKKSCFIEYKKVAFEEPIRFCHIPLVCEGEGPEECKTVYESQCETRYHEHEVQDDVVTCETIQEEKCEDVTQGYTTEQKCTKWPRQVCDSKTVPVKKYTPETECKKVPRELCGPSGCVLTPGPEECFDKKDTVVQEVPEETCNLEPQRSCRHVTKLVPLLKPNEECVDIPKEVCSRSRKNPR
Ga0210352_125798	Ga0210352_1257981	F075504	YKVLRDNMLHHEAKSIVKAHSKTKNVALIWQLVSETYDKSMSTSLNGDAILSWLTSSKLDDGKWNRPHGEYLTFYEDKVNKFNEMCPDSKIGDMQGVRMLQNSIANVPHLANVLILYRQTKTSAGQSDKITLRQFVALLAQQAQVYDSGRIHTGRNYRRSAPNHDLDYEVNANDF
Ga0210352_126574	Ga0210352_1265741	F038082	MGAHIKRENFLQSNLPKAFAYIMNDYCTDGLKTRLAALPDYTTSIQDDPLALLKAIKTCVHENAVTQYPPVTIQQHWSRLLQLKQSSDEDPPTYAKRFEQQLETVKGYVGNTFTDGFAEHMPDYKANAYKHDAGKITALLATHVTDNAARQALATDLLDLFSHYKPKETQAQLNLKAQVRSEFEAYLFLWSASKAKYGSLLQTLQQQYSLGQAH
Ga0210352_127115	Ga0210352_1271151	F052976	QEPIMSEAVHKCEHCGRDNFKSKHGLSKHKLENKGCKDHLKARFGSTADTKIAAAYLPVDTVHKPQRCAAGSQNAMHYPDVADGLGAKRAKHMSLPDKDFISAWLMKAQSQLEQSQVDTDSDADIGMCDAENDVILPPTEESSARQRIMLDNFKDYAKRANDFVPIDSNKFVTAITLLQTLRRTKASLDTYEAIMRWKLESQGLLHPGESLAKSPHCISREQVYKKLK
Ga0210352_130647	Ga0210352_1306472	F030135	LKDREEFAKLSSTSDIWHSTFIGCQLPDAIPPGTEDFDLVAGPLD
Ga0210352_131892	Ga0210352_1318922	F001679	VWGMSWRQKAMKGVEGCDKPGEAVKRALIPGFPNYRTLNT
Ga0210352_133419	Ga0210352_1334191	F014821	MQALQSEAITPEEQALPRFSQRALQKLPTWDLWHKNEIKQLDQMKALGMFGDPVPLPEGAILMRFHWQYRIKVNGKRRSRACCDGSPRAAPEAHSSTNTYASCLEHPIYRLFIALCAADGLTICGGDAKDAFAHSPGPTKPTFMKVDNAFREWYHMRTGVWLDKDLVMPVLRALQGHPEAARLWELLVNQSAPSPHSLVSVTGIPDSDKRSD
Ga0210352_136831	Ga0210352_1368311	F058570	MDVDDYCSDVLMLSEQAAVEVVEQGITDYDDFVEMDDKDITGLCDKIRSPGGMIKKGGKG
Ga0210352_139561	Ga0210352_1395611	F042669	MNHLLDIALGCRQESTAKSVYATIGAKLTLHNEAEAPFEYLGLVDSFDGYDVLQTRDYIKLSAESYIRRLLKAHGWENPSPRESSNKPKPPLHESDVANLFNLAAGAVENTPEHKALEAEHGFGYRSVLGEILFAYILCPPDIGYAV
Ga0210352_139678	Ga0210352_1396781	F024483	AKYIQDTKKGIFLGYRTNTLKNVVWYDPLTDRVKYGYHVRFDKGFNDLPLSKLPPNVVLMDRREERVPAETLTITIPPFTTSEHPFFHEDDVTVKVVCDSDLYGFELREDNCMKRVYISDFKKDGKGTKGRRSCNTICSTERATRRKYRGAYITAIDDEEIVTLNQAKEKLKELRNKNVDTFTMILAREPRPSKSTTRRAYDELEFPEFNLDENLGEDYFASDGNL
Ga0210352_139987	Ga0210352_1399871	F062310	SALTRQPFSVSQDLRNLAAAQEAIGWTNLFKGRISKQWIERQRHYIGDKATTKNNALNWATTVIDYFFTQWFKVWDQRNLDRHGNDHQGRANKLKDVAFREMTHLYTFEEAVPDDIRWLFQTPLEECLHWPLFRQRAWITNWEHIIKKEYATQMETG
Ga0210352_142118	Ga0210352_1421181	F019586	ITSADATIINELTALLKYTPKDLEDEIGIKRVAFIASLLDKADDDLLLWTQGSTATTSDVAGLIATGLRKQMEKAVPRAITTLSSELDHNKNKIGQRMLSVIHLINDDSDLKNQLSQVLPQERNTEELDAAVLKINEYLSHAKAVPTHVDGKLKSVHGCGIYWKVVHGDGVYIYVPV
Ga0210352_142924	Ga0210352_1429241	F022790	YDPLTDRVKYGYHVRFDEGFNDLPLAQLPPNVVLMDRREERVPAETLTITIPPFTTSEHPFFHEDDVTVKVVCNTDMYGFELSEDDCMKRVYISGLKKDGKGTKGRRSCNTMCSSERATRRKYRGAYITAIDDEEIVTIDQAKEKFAELRAKKVESFTMILAREPKPSKAMTRRAYDELELPAFDLDDNLGEDYFAPEEDLEGDSSATPSQKTTEFGTDYVPSIGTKISKDFGSKGYFKGEVVSGPHNVTVEGDNMVVWKVCYEDGDREEMTASEIAH
Ga0210352_145112	Ga0210352_1451121	F019586	GILQHVPEDDDDEIGIKRVAFIASLLTKADDDLFLWAQSTTVGSPEVAARVAPRLRKYMDIAGAIATLSSELENNQNKVGGRMLEVIDLINGDRDLYDQLFKVLPQDRNAEDDITVSNAVIKVGKYLSHAKAVPTRIKAKLNTTRESEECWRIEHGDGITICVPVTHPGVSHL
Ga0210352_148061	Ga0210352_1480611	F060561	KNPADILSKHWDLPSVWNTMKPLLFWNWKLMAPENAGKEGSSIETKDVAELVSKLDAKYNVKVTAQGKGQKNDHVLIEGSDNGSISPVIQAGNQGSRPENTVRPKGKDTNPRTEQSKGIK
Ga0210352_149032	Ga0210352_1490322	F065810	ILNNFQNKYIYYAIDDILYLLKSNPVERESILGLLYSPVLSLHNNLCINFFDIWIQEVYINETSKGNKFLTNEYQNLEQFTYITIKFLYKTRVPVKKADSLW
Ga0210352_151162	Ga0210352_1511621	F019586	GILQHVPEDDHDEIGIARVAFIASLLDKADDDLFLWAQSTTVGTPEVAARIAPPLRKDMDIAGAIATLSSELQNNKNKIGGRMIGVIDLINGDRDLKDQLFQVLPQDRNTEDLDTAVRNAVIKVGECLSHAKAVPTRINAKLNSTRGYEEHWKIEHGDGIYIFVPVAHPGVGHLETLHKE
Ga0210352_154397	Ga0210352_1543972	F078221	FGKVYYDPNHIANIFGLAKMVDTADYVTFDSRIDDAFHVWTKGIETVFALTPSNLYAYKPSANYLEQIADYKNMLPPPDDSSPSVQAAALIDDDFAFHFFMDSNPAPVDEPEYQFLLETVADNLKLYTKREQKDAKLARIAFHGTDQTPILKLKAFIKGGYIRDCPVLSEDVDRAVDIFGPDCSHI
Ga0210352_156783	Ga0210352_1567831	F061006	NTLTWLRNRGVDEPQFGPEEPFKKAQNLPMPDSRTPEQKATDLDNVLNWVRNPKENDTPQTEPFKKIDQLLPKKPGQSPEDRAKDIDNALTWVRNRGVDQPEFEPTSPFDKLNSIPIDRRTPEQKARDVEDILNWKRNPTDNDSPKTEPFKRIDQLLPKKPGQSPEDRANDIDNTLTWLRNRGVDEPQFGPEEPFKKAQNLPMPDSRTPEQKA
Ga0210352_159017	Ga0210352_1590171	F076676	VNTSTTNYAPFATVQEKIATHIQKSYDSGHDLAKSICTGTLIDLSAEKPIRQLADLNDSKAKGDLIQSGFDIEFSTRMGAHIKRENFLKSNLPKAFAYIMNDYCTDGLKNQLVALSDFTTSIQDDPL
Ga0210352_159246	Ga0210352_1592461	F057770	PNSFKALLGKHYNGYKLECDDDKKSFRFSLNHKMRKSGSVLLRGKTRGGLCYTRPAVPPMPTTEGTAEMSLDMADRAAISMVEDHPKNSYRHEMKLHALSAKAERLLWHQRLAHCGDEQLCRAHMFSDGVPEITRGKDSALDNCPVCLAANMRSRNRGDGETRTATK
Ga0210352_159665	Ga0210352_1596651	F031322	AFHFWLRIDNSMASRDQLVSPNYITAGKKDDLSALRTFGCRVWVRPPGRRAAKLIPNSRKGIFLGFIPNTDKNIIWYDTETHVVKIAKHVRFDEGMNDLPPDLVPPNVVHLQRTQNGEPLPAETEETSVDQFTFHLNPFSYTMVKGVKVTDDDPSYGLTLATDEINHRAYVADVKKDSTADKMYATHKSTLKNVKGAYLVGINGKQVFGKDDAISMLRQLYDERAENLQLELAIERKLTSAETWRAVAEHNIMEPSAVHDVDHQHQLSLADVRSIAAIRYP
Ga0210352_163119	Ga0210352_1631191	F014821	TKPSGDRSEELEDALPKPGKDASAPTHLRRSTRLQQLALETARMNFLDSNPCLPMDSIGMYEAATCWIHLCDDDPYEELLHNVDEVETLLQDPVVLAAIHRLLDPDADLDELRVSALQSEAISPEERALPRFSRRALKRLPTWDLWHKNELEQLDQMKALGMFGSPIKLPEGGILMRFHWQYRIKVNGKRRSRLCCDGSPRAAPEVHSTTNTYASCLEHP
Ga0210352_165021	Ga0210352_1650214	F012678	MLNQHSLEEIADIYNLLGDIKKEYEEGIKPILIKNSPKLFKNPHTVPKLKKIQIN
Ga0210352_166253	Ga0210352_1662531	F046120	LDANLGEDYFASDGNLEGESSMTASRETNTFGTDYVPPIGTKINKDFGTKGFFAGTVMSGPHIRNKDGDNVTVWKVQYEDGDREDMTASEIAYWKMPTEEVQTSQTKAKLKKPKQTMATKPSGVRSEELEDAIPTPGRDASAPTHLRRSTQLQQHALETARMNFLDSN
Ga0210352_169071	Ga0210352_1690711	F019586	MATPVKKITPADETIIQELTRLLQCVPKDQEDEIGIKRVAFIASLLGKADDDLFLWTQSTAVGSPEVAARIAPRLRKDLDIAGAIATLSSELEHNENKFGGRMLSVIHLINGDSDLRNQLSQVLPRALNTEELDTGDLNAVTKVIGYLSHAKAVPTRVDGKLKSARGYDTYWKIAHGDGVYIYV
Ga0210352_171136	Ga0210352_1711361	F063220	APYATVHEKIATYIQKNYDCGHDIAKSIRTGQLVDLDAEKPIRTLATGDKKAERDLIQSGLDIEFSTRMSAHVKREQHLHSNLPKAFAYIMNDYCTDGLKTRLIALPDYESTIRDDPLALLTAIKTCVHENARTQHPPVTISTHWDRLLKLKQAEEEDPPSYAKRFEQQLETVKGYIGSTFTDGFAEQMPEHEANAYMHDAG
Ga0210352_171226	Ga0210352_1712261	F042669	VCLKTHTVPSVVIYAGTFCGEKVLLVRQVDDFALGCRQESTAKSVYATIGTKLTLHNEAEAPFEYLCLVDSFDGYDVLQTRDYIKLSAESYIRRLLKAHGWENPSPRESSNKPKPPLHESDVANLFNLAAGPVENTPEHKALETEHGFGYRSVLGEILFAYVLCRPDIGYAVTTLAKFS
Ga0210352_171555	Ga0210352_1715551	F063220	TTNYAPFATVQEKTATHIQKSYDSGHDLAKSIRTGTLVDLSKEQPIRKLASMSEPKAKRDLIQSGFDIEFSTRMGAHIKRENFLQSNLPKAFAYIMNDYCTDGLKTRLSALPDYLTSIQDDPLALLKAIKTCVHENAVTQYPPVTIQQHWSRLLQLKQSSDEDPPTYAKRFEQQLETVKGYVGNTFTDGFAEHMP
Ga0210352_174151	Ga0210352_1741511	F038934	KCLVNNDYEDIVAYNDVVDFIEKDATWDGIWTFEKILTHQKVKPGDKNHRGSGTNCLVLWSTGEQTWEPLYNRTGKSGLWIDDPVTVAIYARDNGLLDEPGWKLPGLKKMAKTQKKLLRLANKAKLHSFRNKPICMYGFQVPRNHFEAMELDRTNGNSMWRDAEVTELNQIDEYKSFI
Ga0210352_174708	Ga0210352_1747081	F014821	HLCDDDPYEELLHNVDEVETLLQDPVVLAAIHRLLDLDADLDDLRVSVLQSEAISPEERALPRFSRRALKRLPTWDLWHKNELEQLDQMKALGMFGSPIKLPEGGILMRFHWQYRIKVNGKRRSRLCCDGSPRAAPEVHSTTNTYASCLEHPVFRLFIALCAADNLTF
Ga0210352_174864	Ga0210352_1748641	F038082	IAQADKKPERDLIQSGLDIEFSTRMSAHVKREQHLHSNLPKAFAYVMNDYCTDGLKTRLIALSDYESTIRDDPLGLLTAIKTCVHENARTQYPPATISTHWDRLLKLKQGEEEDPPSYAKQFEKQLETVKGYIGSTFTDGFAEQMPEHEANAYMHDAGKIAALLDMHVAEVDARKALADD
Ga0210352_175111	Ga0210352_1751111	F023254	SCNTICSTERATRRKYRGSYITAINDEEIVTLNQAKEKLKELRNKNVDTFTMILAREPRPSKSMTRRAYDKLELPDFDLDENLGEDYFASDGNLEGDSSMTASRETNTFGTDYVPPIGTKISKDFGTKGFFTGTVTSGPHIRDKDGDDVTVWKVQYEDGDCEDMTASEIAYWKMPAEEVQTSQTKAKSKKPKQTMATKPSGDRSEELEDNIPTPGRDASAPTHLR
Ga0210352_175294	Ga0210352_1752941	F017955	LNASFHADCQFIKEQKQRLIIQNNKRENAKRKPHTYNVGDVVVVKAGVKRKHGSNPYLDPMRITQVNDNGTVKLAKVADNNGGAVSQTWNIRNIEPRMA
Ga0210352_175787	Ga0210352_1757871	F024483	DRVKYGYHVRFDEGFNDLPLSKLPPNVVLMDRREERIPAETLTITIPPFTTSEHPFFHEDDVTVKVVCDSDLYGFELREDDCMKRVYISDFKKDGKGTKGRRSCNTICSTERATRRKYRGAYITAIDDEEIVTLNQAKEKLKELRNKNVDTFTMILAREPRPSKSMTRRAYDEL
Ga0210352_178264	Ga0210352_1782641	F021307	MNRILYENRCKCNEEFSITKKRKSPTKSEGKPLQYPKPNEIISKTFQIRYDKKLSTTSKFILNSFQNKYIYYAIDDILYLFELNKTERNNLLAILYSPVLSLQ
Ga0210352_178842	Ga0210352_1788421	F017093	GYDPYLGPMRITQVHDNGTVKLIKVSDENGGAVTQTWNIRNIQPRMA
Ga0210352_181243	Ga0210352_1812431	F027105	IRSAESSVSSRDLPDLEYGASSVDSDSDDDRTISTVATDTDASSLFDLLHDDPEFDMLRLNSVVVSRVPNEVITIDDLEEDEWTDEESIEDKAYKNVQELKISEVATGSILTTSRYEAHLDGGSQASTTNDKTVLWGFKWYTNKNPCRIRLICADGKTPIVPEGYGTLRIPADNAEG
Ga0210352_181589	Ga0210352_1815891	F000068	KWPKQVCKNEKKTVKKYTPETDCKKVPRELCGPSGCVLTPGPEECFDKKETVVQEVPEETCNLEPQRQCKHVTTLVPVLKPQEECVDIPKEVCSRSRKNPRKVQKPVVKKWCYVPTAESGLA
Ga0210352_182544	Ga0210352_1825441	F077370	GKTNDRAIDILVNIFAVNSLGTPFYSFSTSAGSPQLSSNLTDLMILQFTEYSELAQIYGLVKLKKIQLGFTRSSNFIGGGTTILQNTPSIFLQASTIPYSTGSVVLQRAIAQSDNSIELDLQTYDPKSYEIFLPPHIVSNNRANNQTFAFGSQTWISTRLNNVQNLPDLFLNLGSLATPTFDPSTTSGNSVLIG
Ga0210352_183444	Ga0210352_1834441	F081955	QENHSTMATPAKKITPADETIIKELSGILQYVSEDDHDEIGIKRVAFIASLLDKTDDDLFLWTQSTTATTPDVAARIATNLRKEMDIAVAGAITTLSSELQHNKNKIGRRMLNVIDLINGDSDLKNQLSQVLPQERNAEELDTAELNAVIKVSECLSHAKAVPTRVNGKLNSTRGYEEFWKIEHGDGIYIYVPVGHPGVSHLEKLHKEGTDLTLTNIFQDVPTEPRKRSSSDADLDDPLTPSQRTTRTQTIYLQMEKSRDDKVRAIKPKIKERQNHLKRTLPAMTEESIKLRSLGWAK
Ga0210352_187017	Ga0210352_1870171	F007629	PEAAGKEGSNIETKDVAELVSKLDAKYNVKVTAQGKGQKNDHVLIEGSDNGSISPVIQAGNQGSRPKNTVRPKGKDTNRHTEQSKGIKK
Ga0210352_187019	Ga0210352_1870191	F021307	MNRILYENRCRCNEDFLITKKRKSTTRSEGKPLQYPKPNEITSQTFQIKYDKKLSSIAKAILNSFQNKYIYYAIDDILYLLKGNSIERDNLLAILYSPVL
Ga0210352_187649	Ga0210352_1876491	F022124	GAHVSCTDQLHMLHGYRKFTRSRPSPVKLMPATVDSDAVPKGIGYLHVPAKNAQGYLAVPTFYTPCLRTTVIDERDLVKAARVSVKDIRSDSITKHKDAGTFTYHARHRMKSSKDVIVHGVLIDDKCYTGALISPDLSPSDPKATPSTSSILAMESDPDFAEQCRKATILAVHGYHEAVETQLRDEMTKLPMQFHTLPFHEYIQANTPVTTIKAATERLLWH
Ga0210352_189526	Ga0210352_1895261	F089621	APLGMLGLKAPMEGGTLGLASPPIEKGVPGIGEVLGIVLWSWKKLDSLGWS
Ga0210352_192947	Ga0210352_1929471	F027700	AAISMVEDHPKNSYRHEMKLHALSAKAERSLWHQRLAHCGDEQLCRAHMFSDGVPEITRGKDSALDNCPVCLAANMRSRNRGDGETRTATKPGQGLSLDFSFAGQHSKNATDPKKMRINDYMGIHGETCHLLLYDHATERLDGVCRQSKAPPLAWLKRWLKKKVKDEVKD
Ga0210352_198153	Ga0210352_1981532	F013273	DQYCFDRYFPMSRKTSKELQEEIDALTDQLAATLRLEIADLTRQAEEGELQYQALLRSMIGRMILITKKHDPLFGMEAVITGPRGPSKKPMYWWFQTTTGLRQYKARASFKLLPLDVPSSELA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300021277: Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Washington, United States ? S.487 (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences