Sample 3300021262

Basic Information
IMG/M Taxon OID	3300021262 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0131209 \| Gp0238801 \| Ga0213904
Sample Name	Switchgrass-associated microbial communities from reclaimed mine lands soil in West Virginia, United States ? Hobet_Shaw_1
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Switchgrass-associated microbial communities from reclaimed mine lands soil in West Virginia, United States ? Hobet_Shaw_1

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	10515613
Sequencing Scaffolds	21
Novel Protein Genes	22
Associated Families	22

Dataset Contents

Total Genome Size

10515613

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	12
All Organisms → cellular organisms → Bacteria	9

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

All Organisms → cellular organisms → Bacteria

Ecosystem Assignment (GOLD)
Name	Switchgrass-Associated Microbial Communities From Reclaimed Mine Lands Soil In West Virginia, United States
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Switchgrass-Associated Microbial Communities From Reclaimed Mine Lands Soil In West Virginia, United States

Ecosystem Assignment (GOLD)

Name

Switchgrass-Associated Microbial Communities From Reclaimed Mine Lands Soil In West Virginia, United States

Type

Environmental

Taxonomy

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Switchgrass-Associated Microbial Communities From Reclaimed Mine Lands Soil In West Virginia, United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	terrestrial biome → land → soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

terrestrial biome → land → soil

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Soil (non-saline)

Location Information
Location	USA: West Virginia
Coordinates	Lat. (^o)	38.083	Long. (^o)	-81.98	Alt. (m)	N/A	Depth (m)	.1
Location on Map

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Location Information

Location

USA: West Virginia

Coordinates

Lat. (^o)

38.083

Long. (^o)

-81.98

Alt. (m)

N/A

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F001750	Metagenome / Metatranscriptome	642	Y
F002064	Metagenome	597	Y
F002279	Metagenome	575	Y
F002324	Metagenome	571	Y
F002338	Metagenome / Metatranscriptome	569	Y
F004159	Metagenome / Metatranscriptome	450	Y
F004903	Metagenome / Metatranscriptome	419	Y
F006090	Metagenome	382	Y
F007132	Metagenome / Metatranscriptome	357	Y
F007509	Metagenome / Metatranscriptome	350	Y
F009712	Metagenome	314	Y
F010196	Metagenome / Metatranscriptome	307	Y
F010716	Metagenome	300	Y
F011178	Metagenome / Metatranscriptome	294	Y
F013826	Metagenome / Metatranscriptome	268	Y
F020065	Metagenome	226	Y
F025567	Metagenome	201	Y
F040704	Metagenome	161	Y
F056041	Metagenome	138	Y
F058376	Metagenome	135	Y
F061939	Metagenome / Metatranscriptome	131	Y
F079081	Metagenome / Metatranscriptome	116	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0213904_100028	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2921	Open in IMG/M
Ga0213904_100065	All Organisms → cellular organisms → Bacteria	2479	Open in IMG/M
Ga0213904_100067	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2456	Open in IMG/M
Ga0213904_100089	All Organisms → cellular organisms → Bacteria	2313	Open in IMG/M
Ga0213904_100160	All Organisms → cellular organisms → Bacteria	1977	Open in IMG/M
Ga0213904_100177	All Organisms → cellular organisms → Bacteria	1931	Open in IMG/M
Ga0213904_100207	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1841	Open in IMG/M
Ga0213904_100252	All Organisms → cellular organisms → Bacteria	1757	Open in IMG/M
Ga0213904_100297	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1699	Open in IMG/M
Ga0213904_100308	All Organisms → cellular organisms → Bacteria	1674	Open in IMG/M
Ga0213904_100471	All Organisms → cellular organisms → Bacteria	1471	Open in IMG/M
Ga0213904_100615	All Organisms → cellular organisms → Bacteria	1347	Open in IMG/M
Ga0213904_101069	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1085	Open in IMG/M
Ga0213904_101241	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1002	Open in IMG/M
Ga0213904_101723	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	842	Open in IMG/M
Ga0213904_102041	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	766	Open in IMG/M
Ga0213904_102205	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	730	Open in IMG/M
Ga0213904_102871	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	606	Open in IMG/M
Ga0213904_103006	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	587	Open in IMG/M
Ga0213904_103518	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	526	Open in IMG/M
Ga0213904_103742	All Organisms → cellular organisms → Bacteria	503	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0213904_100028	Ga0213904_1000284	F013826	MAVCWRCPVCEEVSCETDVNAAGMPLACDHCERAVLPAEALCAVCDNPNPWARKDSLHFVCRECGQTQTFYGLAVTSLH
Ga0213904_100065	Ga0213904_1000651	F079081	MIESFKQLEEVGRDRDLAEVFLEVDEQEHGIPGEQILAALRKRREVMRDCIERGKSGGLSMGKLVGNEAKKLN
Ga0213904_100067	Ga0213904_1000673	F002324	MGEIKLFQICYEGELTVDVSHAMRRLGAEPNFDQSWQVWLHESRHAAPIVRWMRSHIADDARLLVATTQFSTTRDFLLIRHSLTPGADYRELHDAIERLGIVVELPFESTFVVRSSDSTHPAIDVQTLGRALGELCPDESLMVTGVSHDWAFCNSGVSRMYVADEGEQRILLRSF
Ga0213904_100089	Ga0213904_1000891	F006090	PNPEICKVKGVMFGGRKQFLIDSAGEQGFYNLIAHLSPRTMTYARTPLASSWCEFESLIELDRTIYNTLKAQFPNVLALIGAASAELGIGRVYKSLDSAELLKFLENNALFHSQYQKFGNVRVEKTPNGAKMVYTDYPCYSPIYCASAHGFFFESMLRHGANDPTVSETKCQTLGDSSCTFEMTWR
Ga0213904_100160	Ga0213904_1001602	F061939	MRRARYILVAAILAAFATGCFDIEESIDLKKDMSGTANLKLGVDMEPMITIMAMVQRGMEGKKGPPTKEEIAAAKADFKKNMKTSKSEAPPDPKKDMDKNLPPGIKLLDASVTEKEFGMVTNMKFAFDKLAHLVDVKMPSKADAKGGPPDPTKSNVLDSPFQGLDVVETASTITIRTKPQNPADKVKSETSSQGPPMDPETQKMMEDAFKGMRFAWKITAPFEVVSSNAHRREGNTLIWEYDFKKLQALGDNPKAMDDLAVKVVYKK
Ga0213904_100177	Ga0213904_1001774	F009712	MSVLFGRLFQMIGMVLLPYGLLVGLLRDNIQLEVRLLFIGGAFFVVGWFMARK
Ga0213904_100207	Ga0213904_1002072	F004159	MATHKQSDDFERSAAGMDYEDPIRERAASIGAAIAENGPEAIFEEIENLLPEQWREQIKTFPIAAVLLGLGVGIFLGMKKGDEIISAGTALVTSAAMSNVNEIFGKSGE
Ga0213904_100252	Ga0213904_1002522	F025567	AAPVVVKAAKAVEKRARRPRTRVTSSGPVVANWFSQEKARPSSFIPAPPRAEAPSLVAAPPASSDRLIRPEELHELAVRTVPVRVDVEQGAGRVFISVNPQEATLRTGEGIEWDFRYLNGADVIVDEIIIEFDRPSPFGTQSFKSRKPGAARPHRQMSGGVSQASAGKRLQYTIRAMTAFKTELANIKPFVTIV
Ga0213904_100297	Ga0213904_1002971	F001750	MPKVSAEVPADLARQIDRIIRDGWYADEEAVVREALLQFLDAKSFLGDSPRMLHRFAADALNDSKPDVALKFVDRAVSLLNAQQMTDFTLYQSLVELRVQILLILGRESDALTTLEEAREKMPNNPSIAKWIEKVRKSQ
Ga0213904_100308	Ga0213904_1003083	F002064	MTAVDTATSSLTEQQLGVLYQYTIEAYKTFEKLAENLPNPMAAMTFKQFAVDERGNRDLLELKIAGAGPRGVRATLGADMQFDEIHEGDLSYREAAEFLVAREKTLQRRIEELTKDAAPADRNLLIYLSGVKRAHIVELERELVLIRGDADWWKREDAEWRIVHGHRE
Ga0213904_100471	Ga0213904_1004712	F020065	MSTKKSQIQQIKEGLAMRQKTYGGRLQPFGPKAPLPTKNAVNLSTVPASSEEKYNGGKDE
Ga0213904_100615	Ga0213904_1006152	F010716	MNPGEKKQIEAEIERARDGVGDRIDELDAQLRRKLDFDAMAREHAPQIIAGGAVVGFLVGFGFPKLLKRAIQIGVPLALIAYKVKTSRDGHESEGFAEV
Ga0213904_101069	Ga0213904_1010693	F002338	MQELKAEKPTESPAGTNVVTRLMARLAEEGFTTDQSPEEWEEFGEIIFKRDEKISIAAGETVFIFTRIPDLNDRILRQTSDAVVHTYAAKSVQQKVLSVLQSTTVYHCLVCTTEQPYSEMLDNYVIRRGGATFIPVILVPEINQALYPMLEEGVGTVRPRIDYLQYLLGERRETVNMHRTTVQAFYVSIAVVAVLLIAIGFSFVMH
Ga0213904_101241	Ga0213904_1012412	F010196	VSGPRLIVGIIVMGIAVPLAIVFLLDLSTLTQFLTVAATTFLSWGVADLFATILEKPRLKGRSPTAAIREDWERRTTE
Ga0213904_101723	Ga0213904_1017232	F002279	MAANPSPAPVPDWARLVTDSMRQYGSWHTYNKLVEARDMYSNDLGLRGYLEIIRTAIVREFLNTPRGLQAVPRLSAEFLTNFDRFNLNAQEGYLVSLIDGRLDLQKLTILSPFDAFNTFFILAKLQQERAITVPQ
Ga0213904_102041	Ga0213904_1020411	F056041	MAVRGEEVASSIDAHVREAVERMVSEIRTSIEDIRTAVDSQLKAALQSVQADVNSFSFLPHIQKTIGELEETFQAEQPAPVVAPAGGGDVSRLKRAVQAVERGKSQVDILNALLE
Ga0213904_102205	Ga0213904_1022051	F007509	NAALEHAIADIANEAKVKFEPRAIAALRQRLGIDRLLADKFSREVPEIRVAVSEAERLATLAGEGGRVDAAMVEREVTAVEGGARYEFGSLFSEGKIIEAIAKLRELVAQGRREDPRASIDIQYGKFLFPLADELRQLIAIHSFARAANLNLRQSIQYNRFKDTIAEKLGDYMKNAGIVRQRPHPFPLHKKWSAAGAQREEDLWRALALVADLEVKRKSGGLPVDVGMETFLLSRLRA
Ga0213904_102871	Ga0213904_1028712	F011178	MRIAVNERGLGLRERLRDRLDQAAQLRCKEHNAPVIAVTIHGRENGWFDSIWTTCCSSLEQRAISIVKDRC
Ga0213904_103006	Ga0213904_1030061	F004903	MGRYLQKISLRPYSDSEIWTGWELEGRTDEIEGLLLADGMSAEELSAYGVTEFQMIPAEYLERERRPRR
Ga0213904_103381	Ga0213904_1033811	F058376	MPTEVEKLRDIARKFWRGEDIFCEKHPGVKMAGTFVQTTFADHVFLTCPKGRETITLPQRPRQVEFHPQQVIGMVENIQRGDSNLCYRCQAKLEIEAVEN
Ga0213904_103518	Ga0213904_1035181	F007132	MTREAVRATAGKVLRSEDLIGDEKQAAADILQANPHFGNPHVVRCGWCHQTKTLFRDEDEKPFKHIPHGWLCETCDLRASSQEVKF
Ga0213904_103742	Ga0213904_1037422	F040704	NSVDHDRSIAEEVANTTRCDVNIPMNEVGVDLSSVWRRALRYRAEREGTANALRVREGQQIEPRSRCSEGRWTFDGTTLRFSHEIATAPPDNPMPLTMKLVVGPSGIAPSSLLP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300021262: Switchgrass-associated microbial communities from reclaimed mine lands soil in West Virginia, United States ? Hobet_Shaw_1

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences