Sample 3300021129

Overview

Basic Information
IMG/M Taxon OID	3300021129 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0063444 \| Gp0053452 \| Ga0214179
Sample Name	Freshwater microbial communities from Trout Bog Lake, WI - 01OCT2007 epilimnion
Sequencing Status	Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	Y
Use Policy	Open

Dataset Contents
Total Genome Size	178283049
Sequencing Scaffolds	16
Novel Protein Genes	18
Associated Families	17

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	11
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Cryptomonadaceae → Cryptomonas → Cryptomonas curvata	3
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Monogononta → Pseudotrocha → Ploima → Brachionidae → Brachionus	1
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	freshwater lake biome → epilimnion → lake water
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Location Information
Location	Trout Bog, Vilas County, Wisconsin, USA
Coordinates	Lat. (^o)	46.041	Long. (^o)	-89.686	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

Zoom:	Powered by OpenStreetMap^©

Family	Category	Number of Sequences	3D Structure?
F011749	Metagenome	287	Y
F013732	Metagenome / Metatranscriptome	268	Y
F017631	Metagenome / Metatranscriptome	239	Y
F019434	Metagenome	229	N
F021233	Metagenome	219	Y
F022576	Metagenome	213	Y
F028730	Metagenome	190	Y
F042809	Metagenome	157	Y
F044899	Metagenome	153	N
F048062	Metagenome / Metatranscriptome	148	Y
F057900	Metagenome / Metatranscriptome	135	Y
F080070	Metagenome / Metatranscriptome	115	Y
F083675	Metagenome	112	N
F096503	Metagenome	104	N
F096631	Metagenome	104	N
F098677	Metagenome	103	N
F104490	Metagenome	100	N

Family

Category

Number of Sequences

3D Structure?

F011749

Metagenome

287

F013732

Metagenome / Metatranscriptome

268

F017631

Metagenome / Metatranscriptome

239

F019434

Metagenome

229

F021233

Metagenome

219

F022576

Metagenome

213

F028730

Metagenome

190

F042809

Metagenome

157

F044899

Metagenome

153

F048062

Metagenome / Metatranscriptome

148

F057900

Metagenome / Metatranscriptome

135

F080070

Metagenome / Metatranscriptome

115

F083675

Metagenome

112

F096503

Metagenome

104

F096631

Metagenome

104

F098677

Metagenome

103

F104490

Metagenome

100

Scaffold	Taxonomy	Length	IMG/M Link
Ga0214179_1004540	Not Available	2174	Open in IMG/M
Ga0214179_1015290	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Cryptomonadaceae → Cryptomonas → Cryptomonas curvata	1429	Open in IMG/M
Ga0214179_1021800	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Cryptomonadaceae → Cryptomonas → Cryptomonas curvata	1246	Open in IMG/M
Ga0214179_1024252	Not Available	1192	Open in IMG/M
Ga0214179_1035226	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Monogononta → Pseudotrocha → Ploima → Brachionidae → Brachionus	1017	Open in IMG/M
Ga0214179_1042081	All Organisms → cellular organisms → Bacteria	938	Open in IMG/M
Ga0214179_1051123	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Cryptomonadaceae → Cryptomonas → Cryptomonas curvata	853	Open in IMG/M
Ga0214179_1057459	Not Available	803	Open in IMG/M
Ga0214179_1057586	Not Available	802	Open in IMG/M
Ga0214179_1068286	Not Available	732	Open in IMG/M
Ga0214179_1084584	Not Available	646	Open in IMG/M
Ga0214179_1085729	Not Available	641	Open in IMG/M
Ga0214179_1088413	Not Available	629	Open in IMG/M
Ga0214179_1094288	Not Available	604	Open in IMG/M
Ga0214179_1116931	Not Available	525	Open in IMG/M
Ga0214179_1124427	Not Available	503	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0214179_1004540

Not Available

2174

Open in IMG/M

Ga0214179_1015290

All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Cryptomonadaceae → Cryptomonas → Cryptomonas curvata

1429

Open in IMG/M

Ga0214179_1021800

All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Cryptomonadaceae → Cryptomonas → Cryptomonas curvata

1246

Open in IMG/M

Ga0214179_1024252

Not Available

1192

Open in IMG/M

Ga0214179_1035226

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Monogononta → Pseudotrocha → Ploima → Brachionidae → Brachionus

1017

Open in IMG/M

Ga0214179_1042081

All Organisms → cellular organisms → Bacteria

938

Open in IMG/M

Ga0214179_1051123

All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Cryptomonadaceae → Cryptomonas → Cryptomonas curvata

853

Open in IMG/M

Ga0214179_1057459

Not Available

803

Open in IMG/M

Ga0214179_1057586

Not Available

802

Open in IMG/M

Ga0214179_1068286

Not Available

732

Open in IMG/M

Ga0214179_1084584

Not Available

646

Open in IMG/M

Ga0214179_1085729

Not Available

641

Open in IMG/M

Ga0214179_1088413

Not Available

629

Open in IMG/M

Ga0214179_1094288

Not Available

604

Open in IMG/M

Ga0214179_1116931

Not Available

525

Open in IMG/M

Ga0214179_1124427

Not Available

503

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0214179_1004540	Ga0214179_10045401	F044899	FLIILIILIIXFLHRRQVVGPQRTNRTPPSARTVSGRKRVLNSDDDDIEASADGLFSEGGSLQEAGGGSPQTSDSAVKKRKVNKHGQVTLTNGVVSMRELGLSIAVPSKCRDDNALTLFNATLSWGQAYALCTLVMCGKDHPVEKAKDMETRMKIMYSAAPYSISDASLSEILEAEPEQRQAYLHGMSKAAQQKLRYALYGQVGNLFNEKVFTKTGVQPSEMVKLHLGLKDLVPERGLMDMXVTLNLKPLLVMMHSKAFIAQLERKIC
Ga0214179_1015290	Ga0214179_10152902	F011749	VQTNCLNLLPRRSTPPWWREAGESGTKQLYQPEPQQVTYMVPITRILGRLPLVPVGDHGTIPASMSNRKHQLFKHGRCDEAGRPGTGSKLYYINSWAMCWPTDHAKKPLTG
Ga0214179_1021800	Ga0214179_10218001	F019434	MSLEDAWHARPQLFFKCLLRPRNGRPPKNQTWTRGPDDIEACLVFFSTFEELKLPATGPMDRATTKLYEPSPTPILYVAPCELMLGRVPLFPCFLQGNATPTIPHKLRHLKASAFQYGIADAAAVDGRRGSNVYEVNPWLWQFGRGRPRLGGLSVSETEERREAVVRAGAKRSQETRRRREAARRGDE
Ga0214179_1024252	Ga0214179_10242521	F080070	SLNQILAAGKRDLSQKDLLSTIVSSLGLDQVWSTITSLGSSVYLQFVQIGTQLLFAGQQIWAQVTPILSQLKDDLINHTGDAVTIVAQSIASLNQILAGSGKRDLLSNIVSSLGLDQVWATITALGSSVYLQFVQIGTQLLFAGQQVWAQAQVVLSQLKDDLINHTGDAVTIVAQSIAQLNQILG
Ga0214179_1035226	Ga0214179_10352262	F080070	MRSLLILLTICIATTFGAHLNARELAQKDLLSTIVSSLGLDQVWSTITALGSSVYLQFVQIGTQLLFAGQQIWAQATVVLNQLKDDLINHTGDAVTIVSQSIASLNQILAAGKRDLSQKDLLSTIVSSLGLDQVWSTITSLGSSVYLQ
Ga0214179_1042081	Ga0214179_10420811	F017631	YEKRYMEALAIAKRLGDGLEREDAYRSGQFRIQPVQ
Ga0214179_1046896	Ga0214179_10468961	F028730	SGQFIEFKSPRIVLQLDSQIPFPKKATLEQTQAIIKFARQMRISPNWLCVDRTGNGSGIHDSLCTLFGTEVLGVNYSWAATDTHILGDDSQLASELYNGVVTELLFGLSKYLEFEYLKISPSFRNEDLIRQATARRYKQKGKGMVRVESKQDYCKRTRSKSPDALDSLSLLVFLMRQRGGANATMTEPKAQPHAEDRLKSIVDNMEFVDFSE
Ga0214179_1051123	Ga0214179_10511231	F083675	TKCRTNETINKELKTKKKERSQPIVDANDVAKVLLALVFVLDGLAQPELNRFNGLQARPRDRVRDPFRPIIRAIQGYLRAYHVYRAEALTVREIKQLDTMSRDALEGLQRVFPYGVTYTNGAFRSFFCCEKPHSMTHWADNYATVGRIRTMSTQVTESRYKSSVKTKARKTNNQASFGGSLLQNNMEVEAAIELAQHLDETGLHRVRTGFDQTWSGLVGSYHTNRPVQVCTKFDPSSFQVWVVCAKFTQSSA
Ga0214179_1057459	Ga0214179_10574591	F104490	MSVDVELSSLPARINLYLNSANRTLGDSASSFEMTMSNTLVTADTNEIFFMNVIQFNTFNNFYQVQTGYNTDFQIILKPTSGNNQIITGTIPYGNLSVYDILNYLTTLLSGLITITYDKLKNKFIFTRIINTSTLYNGIYISNIYLNIINCESLIGYSRTSRNKNIEFLYNVPQYS
Ga0214179_1057586	Ga0214179_10575863	F022576	MTIDLNEHMEKKKQERHIAAYDAIGAAVDGMSIGTILHILSVFSATVLDQLDEPERSKAAMVFASVIMESKGQPEAPVQ
Ga0214179_1068286	Ga0214179_10682861	F013732	MPAINLPNGQSAILFSTDEISERTNRMISRAFMKAAGSAAKLNNLGFDDSKPETWSIFAEISDEDQANLDGYQAALIAGMVKSWSLGDLPTTESALDLPKAVFDELANACAEEYNKRPDFSPDPDPKAPTAD
Ga0214179_1084584	Ga0214179_10845841	F057900	DLVAQTTHENTTFGFCGWAWDDLRDWKPEFLRQDYTFFSIETPQDTNATPIWGRKRRYQISELLPILESPELSAMAGWNINNLVKSINAAIPAGRTLDADEDARRYEDWIREGSYGASYENDAKYVELGELLIKEPHGKISRFLFDDKSGEEICTQVDRYNNMSECLALFSVEVGSGSLMSSRGAGRDLYNTHVAIDKARNLIVDNTYLKGLLLL
Ga0214179_1085729	Ga0214179_10857291	F096631	NGYISVTYDKIKNLFLFTRTKAVDTSNNKIYLKNKTSSNFLGFPKDYNNKEILITTIGVYSYQPINVIYHQQLLINIDGDIQMAINNLDNKNSDVLEPSGVLFMKPIDINKNQLIMYDNIDGNASFQYKISQKDTINQINFRITNQDNEEISTLGDWQMTLQLERHDEDITETLLTQIKEYISYIFLIIGTYLS
Ga0214179_1088413	Ga0214179_10884132	F048062	PFYNDGAETGIVPGDEPHKQEVWPYDGTNPALVPYQQGIVAAVQESRERIYDSLIVVDRLEKMGMVNPDDRAKHLAKFEQMDSAKLAGFVASLDMLEESGARQPRSQKVASGSNRLPEMGRLTTASTVKRQDISSDDWLMTL
Ga0214179_1094288	Ga0214179_10942881	F021233	LNKGIKRGLEGLTEPELGISHDDKFGELHEFAVRAFTWKTKPEDLEMLETIERVVDDFMRDYIDPAEVIIARFNTDKSLNADEADRLFLNLQSAITAIEEEVTRRYLKAQYSYYMLDDKYWNAWRKPTGGTQKDLEAVAKLETREDRQFYFVQYAAWRMINDKVQSLKATQRYIQQQIYRRS
Ga0214179_1095997	Ga0214179_10959972	F096503	MFKLDYRTGRKLVWGTAAIVFLYVDVTADGGISFWAAVYGLATA
Ga0214179_1116931	Ga0214179_11169311	F042809	MKFSQATLNQVAGFDAQVLAQNLIFQQKDFWNFNWQVITSYSGGWTANTNPVDLTGATIDAQIVRRAISNLQDGRTGYNMTISDYPLIPQVAVISATSSSDNTFTCDT
Ga0214179_1124427	Ga0214179_11244272	F098677	AVRAAPDLMAFMAVFGTDTIFREKVPAGNRSAFKDHIMKLHSAESALGEFKGAWKTWLEENQDELSDMEGEEEGNPEAMDFYGGAAPPTPDTE

Scaffold ID

Protein ID

Family

Sequence

Ga0214179_1004540

Ga0214179_10045401

F044899

FLIILIILIIXFLHRRQVVGPQRTNRTPPSARTVSGRKRVLNSDDDDIEASADGLFSEGGSLQEAGGGSPQTSDSAVKKRKVNKHGQVTLTNGVVSMRELGLSIAVPSKCRDDNALTLFNATLSWGQAYALCTLVMCGKDHPVEKAKDMETRMKIMYSAAPYSISDASLSEILEAEPEQRQAYLHGMSKAAQQKLRYALYGQVGNLFNEKVFTKTGVQPSEMVKLHLGLKDLVPERGLMDMXVTLNLKPLLVMMHSKAFIAQLERKIC

Ga0214179_1015290

Ga0214179_10152902

F011749

VQTNCLNLLPRRSTPPWWREAGESGTKQLYQPEPQQVTYMVPITRILGRLPLVPVGDHGTIPASMSNRKHQLFKHGRCDEAGRPGTGSKLYYINSWAMCWPTDHAKKPLTG

Ga0214179_1021800

Ga0214179_10218001

F019434

MSLEDAWHARPQLFFKCLLRPRNGRPPKNQTWTRGPDDIEACLVFFSTFEELKLPATGPMDRATTKLYEPSPTPILYVAPCELMLGRVPLFPCFLQGNATPTIPHKLRHLKASAFQYGIADAAAVDGRRGSNVYEVNPWLWQFGRGRPRLGGLSVSETEERREAVVRAGAKRSQETRRRREAARRGDE

Ga0214179_1024252

Ga0214179_10242521

F080070

SLNQILAAGKRDLSQKDLLSTIVSSLGLDQVWSTITSLGSSVYLQFVQIGTQLLFAGQQIWAQVTPILSQLKDDLINHTGDAVTIVAQSIASLNQILAGSGKRDLLSNIVSSLGLDQVWATITALGSSVYLQFVQIGTQLLFAGQQVWAQAQVVLSQLKDDLINHTGDAVTIVAQSIAQLNQILG

Ga0214179_1035226

Ga0214179_10352262

F080070

MRSLLILLTICIATTFGAHLNARELAQKDLLSTIVSSLGLDQVWSTITALGSSVYLQFVQIGTQLLFAGQQIWAQATVVLNQLKDDLINHTGDAVTIVSQSIASLNQILAAGKRDLSQKDLLSTIVSSLGLDQVWSTITSLGSSVYLQ

Ga0214179_1042081

Ga0214179_10420811

F017631

YEKRYMEALAIAKRLGDGLEREDAYRSGQFRIQPVQ

Ga0214179_1046896

Ga0214179_10468961

F028730

SGQFIEFKSPRIVLQLDSQIPFPKKATLEQTQAIIKFARQMRISPNWLCVDRTGNGSGIHDSLCTLFGTEVLGVNYSWAATDTHILGDDSQLASELYNGVVTELLFGLSKYLEFEYLKISPSFRNEDLIRQATARRYKQKGKGMVRVESKQDYCKRTRSKSPDALDSLSLLVFLMRQRGGANATMTEPKAQPHAEDRLKSIVDNMEFVDFSE

Ga0214179_1051123

Ga0214179_10511231

F083675

TKCRTNETINKELKTKKKERSQPIVDANDVAKVLLALVFVLDGLAQPELNRFNGLQARPRDRVRDPFRPIIRAIQGYLRAYHVYRAEALTVREIKQLDTMSRDALEGLQRVFPYGVTYTNGAFRSFFCCEKPHSMTHWADNYATVGRIRTMSTQVTESRYKSSVKTKARKTNNQASFGGSLLQNNMEVEAAIELAQHLDETGLHRVRTGFDQTWSGLVGSYHTNRPVQVCTKFDPSSFQVWVVCAKFTQSSA

Ga0214179_1057459

Ga0214179_10574591

F104490

MSVDVELSSLPARINLYLNSANRTLGDSASSFEMTMSNTLVTADTNEIFFMNVIQFNTFNNFYQVQTGYNTDFQIILKPTSGNNQIITGTIPYGNLSVYDILNYLTTLLSGLITITYDKLKNKFIFTRIINTSTLYNGIYISNIYLNIINCESLIGYSRTSRNKNIEFLYNVPQYS

Ga0214179_1057586

Ga0214179_10575863

F022576

MTIDLNEHMEKKKQERHIAAYDAIGAAVDGMSIGTILHILSVFSATVLDQLDEPERSKAAMVFASVIMESKGQPEAPVQ

Ga0214179_1068286

Ga0214179_10682861

F013732

MPAINLPNGQSAILFSTDEISERTNRMISRAFMKAAGSAAKLNNLGFDDSKPETWSIFAEISDEDQANLDGYQAALIAGMVKSWSLGDLPTTESALDLPKAVFDELANACAEEYNKRPDFSPDPDPKAPTAD

Ga0214179_1084584

Ga0214179_10845841

F057900

DLVAQTTHENTTFGFCGWAWDDLRDWKPEFLRQDYTFFSIETPQDTNATPIWGRKRRYQISELLPILESPELSAMAGWNINNLVKSINAAIPAGRTLDADEDARRYEDWIREGSYGASYENDAKYVELGELLIKEPHGKISRFLFDDKSGEEICTQVDRYNNMSECLALFSVEVGSGSLMSSRGAGRDLYNTHVAIDKARNLIVDNTYLKGLLLL

Ga0214179_1085729

Ga0214179_10857291

F096631

NGYISVTYDKIKNLFLFTRTKAVDTSNNKIYLKNKTSSNFLGFPKDYNNKEILITTIGVYSYQPINVIYHQQLLINIDGDIQMAINNLDNKNSDVLEPSGVLFMKPIDINKNQLIMYDNIDGNASFQYKISQKDTINQINFRITNQDNEEISTLGDWQMTLQLERHDEDITETLLTQIKEYISYIFLIIGTYLS

Ga0214179_1088413

Ga0214179_10884132

F048062

PFYNDGAETGIVPGDEPHKQEVWPYDGTNPALVPYQQGIVAAVQESRERIYDSLIVVDRLEKMGMVNPDDRAKHLAKFEQMDSAKLAGFVASLDMLEESGARQPRSQKVASGSNRLPEMGRLTTASTVKRQDISSDDWLMTL

Ga0214179_1094288

Ga0214179_10942881

F021233

LNKGIKRGLEGLTEPELGISHDDKFGELHEFAVRAFTWKTKPEDLEMLETIERVVDDFMRDYIDPAEVIIARFNTDKSLNADEADRLFLNLQSAITAIEEEVTRRYLKAQYSYYMLDDKYWNAWRKPTGGTQKDLEAVAKLETREDRQFYFVQYAAWRMINDKVQSLKATQRYIQQQIYRRS

Ga0214179_1095997

Ga0214179_10959972

F096503

MFKLDYRTGRKLVWGTAAIVFLYVDVTADGGISFWAAVYGLATA

Ga0214179_1116931

Ga0214179_11169311

F042809

MKFSQATLNQVAGFDAQVLAQNLIFQQKDFWNFNWQVITSYSGGWTANTNPVDLTGATIDAQIVRRAISNLQDGRTGYNMTISDYPLIPQVAVISATSSSDNTFTCDT

Ga0214179_1124427

Ga0214179_11244272

F098677

AVRAAPDLMAFMAVFGTDTIFREKVPAGNRSAFKDHIMKLHSAESALGEFKGAWKTWLEENQDELSDMEGEEEGNPEAMDFYGGAAPPTPDTE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300021129: Freshwater microbial communities from Trout Bog Lake, WI - 01OCT2007 epilimnion

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences