3300021048: Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P3_4mM

Overview

Basic Information

• IMG/M Taxon OID: 3300021048
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128781 | Gp0225671 | Ga0210245
• Sample Name: Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P3_4mM
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 100992784
• Sequencing Scaffolds: 20
• Novel Protein Genes: 20
• Associated Families: 12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	15
All Organisms → cellular organisms → Eukaryota → Haptista	3
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi	1
All Organisms → cellular organisms → Eukaryota	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa
• Type: Engineered
• Taxonomy: Engineered → Modeled → Simulated Communities (Microbial Mixture) → Unclassified → Unclassified → Defined Medium → Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: USA: Washington
• Coordinates
  • Lat. (^o): 47.6519
  • Long. (^o): -122.3113
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028693	Metagenome / Metatranscriptome	190	Y
F043264	Metagenome / Metatranscriptome	156	Y
F053251	Metagenome / Metatranscriptome	141	N
F063303	Metagenome / Metatranscriptome	129	Y
F074505	Metagenome / Metatranscriptome	119	N
F078160	Metagenome / Metatranscriptome	116	N
F082271	Metagenome / Metatranscriptome	113	N
F088418	Metagenome / Metatranscriptome	109	N
F090311	Metagenome / Metatranscriptome	108	N
F098631	Metagenome	103	N
F104431	Metagenome / Metatranscriptome	100	N
F104622	Metagenome / Metatranscriptome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0210245_100596	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	32665
Ga0210245_101160	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	22218
Ga0210245_101345	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	20227
Ga0210245_101482	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	18632
Ga0210245_101995	All Organisms → cellular organisms → Eukaryota → Haptista	14301
Ga0210245_102306	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi	12055
Ga0210245_103185	All Organisms → cellular organisms → Eukaryota → Haptista	7821
Ga0210245_103927	All Organisms → cellular organisms → Eukaryota → Haptista	5444
Ga0210245_104090	All Organisms → cellular organisms → Eukaryota	5029
Ga0210245_104888	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	3516
Ga0210245_104983	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	3382
Ga0210245_108322	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	1163
Ga0210245_109983	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	880
Ga0210245_110026	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	875
Ga0210245_110879	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	782
Ga0210245_111272	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	747
Ga0210245_114290	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	568
Ga0210245_114625	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	555
Ga0210245_114706	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	552
Ga0210245_115271	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	531

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0210245_100596	Ga0210245_1005964	F028693	VTCEKSFLSRRQEGQAATDSSCWALCQMTKSASRSQSDIAKIIDLAESRLISTTPGSVPPHFDDGGHLPFGGTIGNTRGPSAFGRRKATRANAIGNPQALLLNFPPQNGPAQLACWERNYKSSIYMDPSAEGERLNTTNWTVGLQGKPTEPSYLALAQQTWGNLRQTACTRPTVAPAFIPPKRDATAEQVAAASYSWKWPEREQRPAAPQIKRPEQLTQSFLEEYEQRPPWLKY
Ga0210245_101160	Ga0210245_1011602	F088418	MRCYSVRLLLVAMFATQHTDFESFANALGALPNQPPVPMECEPSPSPIDVDAKAIVQQVVNVLLKHSSSPAVHLEVLDRRWLALARNESVTNLTSTLLPAKVPAMKKRDKRAREVLELMPVTPDCPQATIALLMSQASTHRSAADMKVLRRCGAAAVKLAEAGLKQPTSATSKVVPAETIKALDAHRAAEHANGGKSRSARSRLGRSRQRTRPTRPSISRDVPV
Ga0210245_101345	Ga0210245_1013451	F078160	VKKAKHEEQIRVRARDGEEATLSRDAARLMGTLKDLMDLATSEDGIYPMPTIMASTLQMVCK
Ga0210245_101482	Ga0210245_10148223	F104622	LEGSLMLAVRAADIMVYCAFVPMILMGWDNLVRPPLKMFLKGEGGTLETLYLMFIALLLIPVSIAQTMFGFGGGNTDMAMAVVGAMDMVAGDVAATADETAEEEQGGGEGAGAVGRVEEGVRG
Ga0210245_101995	Ga0210245_1019958	F098631	MSAGSAWPLVGGALVSHGSLVRVRPASDATSLSLLCIPSSRAECDFLTHVTAVQGWVLDFDQHHGAWHIFLFCFLRDVVIPSEHMVVTSCIPMSLAFGDFLLANRRGTLRSLLDDSELHLEREVLHVVAVHSKLLQLQEEGSISGPQCVSQACRYRDFLRSLPVDAWLHYVFLPDPSMLPSFLLA
Ga0210245_102306	Ga0210245_1023066	F088418	MRCSSVRLLLVAMLATQHTDFESFANALGALPNQPPVPMACEPSPSPIDVDTKAIVQQVVDVLLKHSPSPAVHLEVLGRRWLALARNESVTDLTSTLLPAKVPAMKMRDKRAREVLGLMPVTPDCPQATIALLMSQASTHRSAADIRVLRRCGNRAVQLAEAGLKQPTSAMSKVVSAETIKALDAHRAAEAQK
Ga0210245_103185	Ga0210245_1031858	F088418	MRCCSVRLLFVAMLATQHTDFESFANALGGLPNQPPVPMECEPSPSPIDVDTKAIVQQVVDVLLKHSPSPSVHLEVLGRRWLALARNESVTNLTSTLSPAKVPAMKKRDKRAREVLELMPVAPGCPQAIIALLMSQANTHRSAADIKVLRRCGAAAVQFAEAGLKQPTSATSKVVPAETIKALDAHRAAETQKNGKIRAWMRDEDVALLELHAGDLPMSTHHPALVNRSHSARRNRMLLL
Ga0210245_103927	Ga0210245_1039271	F074505	RPWSMPTTARANRTDGDAEAGAAEAEKCKKARVTLPMLSVLQTVLQHAAEALADKTKELTDVLGSINNDQLVAEPDVWLQHGPHCTTRRTADGSRTAQIASHGRLTACRSRLMRYPDRADDRRASLFLRRGALCILACVVQGILCSLCRFPYCSGRRMTHTAVRKST
Ga0210245_104090	Ga0210245_1040901	F053251	MRATSIEEQVVAPTAKKAKREEQIRVRARDGEEVTLLRDAARLMGTLKDLMDLATSEDGIYPMPTITASTLQMVCKLNDPDYTWPSSDEPSLFQLFQLIEDALYIDAPIALKHIQRAIASQLNGKRAPELCALVGAGGDFDSAEEHAPPHVEPAFVPEGVEAPQQPASSTLPPEPLQQPSFSADAMEAALGLVDVATLA
Ga0210245_104888	Ga0210245_1048881	F104622	LEGSLMLAVRAADIMVYCAFVPMILMGWDNLVRPPLKMFLKGEGGTLETLYLMFIALLLIPVSIAQTMFGFGGGNTDMAMAVVGAMDMVAGDVAATADETAEEEQGGGEGAGAVDCVEEVQPLEG
Ga0210245_104983	Ga0210245_1049834	F104431	VRKGKGKGKGGHAESLLFDPGQAHDICLRHFEHVLAAPPPGELQRAMVLDVEASTAPGTFAKVVVVYPAKEPKAIKALHSARDASRMLAEVNIPKRCDWAGGGTMVGGGCMLTRDGLLKPNYAAKPGCQLPRKHKVCASRVCTRG
Ga0210245_108322	Ga0210245_1083221	F063303	EYDPNMPQEKIAGGESMFKNKDERFKKSMELEYAAHVGPGSYSQAEGTVELAFKKQSGKVSSAFASTSLRGDSFIPS
Ga0210245_109983	Ga0210245_1099831	F090311	EERVAFSTWHEHVCGEGERDAALRRAVSSMLQSSVRASLNTWTSYAEEHAQASRVLAGALSSLQPEGRAMRSALNTWAGVTMQRRSMVVAVASLIRGEQLWGLRTWSAHAALVRRQRERVEETARRAIKSMSLQSLRAAMNTWTAMSEARQRNQQALLSAASAFRGDGMRKAWNGWLGLLHDREVMASAVNCMSLRLQRAGFASWVSATEVSVTKQQLRACIRSLSPATRSMRKAINSWSAKQNMMRALSRATAALRMREERVAFSTWHEHVCGEGERDAALRRAVSSMLQSS
Ga0210245_110026	Ga0210245_1100261	F082271	AMSEARQRNQQALLSAASAFRGDGMRKAWNGWLGLLHDREVMASAVNCVSLRLQRAGFASWVSATEVSVTKQQLRACIRSLSPATRSMRKAINSWIEYVNALQSVRRATAALRMREERVAFSTWHEHVCSDGERDAALRRAVSSMLQSSVRASLNTWTSYAEEHAQASRVLAGALSSLQPEGRAMRSALNTWAGVTMQRRSMVVAVASLIRGEQLWGLRTWSAHAALVRRQRERVEETARRAIQSMSLQSLRAAMNTWAAMSEARQRNQQALLSAASAFRGDGMRKAWNGW
Ga0210245_110879	Ga0210245_1108791	F074505	MLATARANRTDGEAEAGAAEAEKSKKARVTLPVLSVLQTVLQHAAEALADKTKELTDVLGSINNDQLVAEPDVWLQPCPHRTLRRTADGSRTAQIASHGRLTACRSRLMGYPDRADDRRASLFLR
Ga0210245_111272	Ga0210245_1112721	F082271	AMSEARQRNQQALLSAASAFRGDGMRKAWNGWLGLLHDREVMASAVNCMSLRLQRAGFASWVSATEVSVTKQQLRACISSLSPATRSMRKAINSWSAKQNMMRALSRATAALRMREERVAFSTWHEHVCGEGERDAALRRAVSSMLQSSVRASLNTWTSYAEEHAQASRVLAGALSSLQPEGRAMRSALNTWAGVTMQRRSMVVAVASLIRGEQLWGLRTWSAHAALVRRQRERVEETARRAIQSMSL
Ga0210245_114290	Ga0210245_1142901	F088418	ELRPSGLAGLSWAHSQAFCMCCCLVRLLLVAMLATQHTDFESFTNALGTLPNQPPVPMACEPSPSPIDVDTKAIVQQVVDVLLKHSPSPAVHLEVLGRRWLALARNESVTKLTSTLLPAKVPAMNMRDKRAREVLELMPVTPDCPQVTIALLMSQASTHRSAADIRVLRRCGNRAVQLAEAGLKQPTSA
Ga0210245_114625	Ga0210245_1146251	F043264	VSTNTSLTSALANPNVGHIVLAPGTYNLSAELNITRSVVLEAAVAGSVVLNAQASYSSQRRVANINPGPSGVVQVIGLNITGGYVSGFSCNAAGC
Ga0210245_114706	Ga0210245_1147061	F074505	RRCRAPWWLQTRSGRPVRASRRRPWSMPTTARANRTDGDAEAGAAEAEKCKKARVTLPVLSVLQTVLQHAAEAFADMTKELTDVLGSINNDQLVAEPDVWLQPRQQRTRRRTADGSRTAQIASHGRLTACRSRLMRYPDRADDRRASLFLRRGALCILACVVQGILCSLCRFPYCSVRHTSTT
Ga0210245_115271	Ga0210245_1152711	F088418	AQSHAFCMRCCSVRLLLVAMLATQYTDFESFANALGALPNQPPVPMACEPSPSPIDVDTNAIVQQVVDVLLKHSPSPAVHLEVLGRRWLALARNESVTNITSTLLHAKVPAMKMRDKRAREVLRLMPVTPDCPQATIALLMSQASTHRSAADIRVLRRCGNRAVQLAEAGLKQPTSA