Sample 3300020697

Overview

Basic Information
IMG/M Taxon OID	3300020697 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0063444 \| Gp0053556 \| Ga0214230
Sample Name	Freshwater microbial communities from Trout Bog Lake, WI - 22MAY2008 hypolimnion
Sequencing Status	Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	Y
Use Policy	Open

Dataset Contents
Total Genome Size	83406058
Sequencing Scaffolds	17
Novel Protein Genes	17
Associated Families	17

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	6
Not Available	8
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Nomurabacteria → Candidatus Nomurabacteria bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	freshwater lake biome → hypolimnion → lake water
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Location Information
Location	Trout Bog, Vilas County, Wisconsin, USA
Coordinates	Lat. (^o)	46.041	Long. (^o)	-89.686	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F002824	Metagenome	527	Y
F008619	Metagenome	330	Y
F020485	Metagenome	223	Y
F023521	Metagenome / Metatranscriptome	209	Y
F024029	Metagenome	207	Y
F038203	Metagenome / Metatranscriptome	166	Y
F053292	Metagenome	141	Y
F057849	Metagenome	135	N
F067363	Metagenome	125	Y
F070862	Metagenome	122	Y
F077312	Metagenome / Metatranscriptome	117	Y
F078138	Metagenome	116	N
F080800	Metagenome	114	N
F083609	Metagenome / Metatranscriptome	112	N
F085373	Metagenome / Metatranscriptome	111	Y
F086266	Metagenome	111	N
F098804	Metagenome / Metatranscriptome	103	N

Family

Category

Number of Sequences

3D Structure?

F002824

Metagenome

527

F008619

Metagenome

330

F020485

Metagenome

223

F023521

Metagenome / Metatranscriptome

209

F024029

Metagenome

207

F038203

Metagenome / Metatranscriptome

166

F053292

Metagenome

141

F057849

Metagenome

135

F067363

Metagenome

125

F070862

Metagenome

122

F077312

Metagenome / Metatranscriptome

117

F078138

Metagenome

116

F080800

Metagenome

114

F083609

Metagenome / Metatranscriptome

112

F085373

Metagenome / Metatranscriptome

111

F086266

Metagenome

111

F098804

Metagenome / Metatranscriptome

103

Scaffold	Taxonomy	Length	IMG/M Link
Ga0214230_100260	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	17772	Open in IMG/M
Ga0214230_100624	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	9522	Open in IMG/M
Ga0214230_102794	Not Available	3393	Open in IMG/M
Ga0214230_103479	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2940	Open in IMG/M
Ga0214230_105868	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2006	Open in IMG/M
Ga0214230_107980	Not Available	1593	Open in IMG/M
Ga0214230_110873	Not Available	1247	Open in IMG/M
Ga0214230_112429	All Organisms → Viruses → Predicted Viral	1120	Open in IMG/M
Ga0214230_116300	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	910	Open in IMG/M
Ga0214230_118290	Not Available	832	Open in IMG/M
Ga0214230_126041	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	645	Open in IMG/M
Ga0214230_126495	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Nomurabacteria → Candidatus Nomurabacteria bacterium	637	Open in IMG/M
Ga0214230_126505	Not Available	637	Open in IMG/M
Ga0214230_128550	Not Available	605	Open in IMG/M
Ga0214230_128976	Not Available	598	Open in IMG/M
Ga0214230_129343	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	593	Open in IMG/M
Ga0214230_136741	Not Available	508	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0214230_100260

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

17772

Open in IMG/M

Ga0214230_100624

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

9522

Open in IMG/M

Ga0214230_102794

Not Available

3393

Open in IMG/M

Ga0214230_103479

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

2940

Open in IMG/M

Ga0214230_105868

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

2006

Open in IMG/M

Ga0214230_107980

Not Available

1593

Open in IMG/M

Ga0214230_110873

Not Available

1247

Open in IMG/M

Ga0214230_112429

All Organisms → Viruses → Predicted Viral

1120

Open in IMG/M

Ga0214230_116300

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

910

Open in IMG/M

Ga0214230_118290

Not Available

832

Open in IMG/M

Ga0214230_126041

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

645

Open in IMG/M

Ga0214230_126495

All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Nomurabacteria → Candidatus Nomurabacteria bacterium

637

Open in IMG/M

Ga0214230_126505

Not Available

637

Open in IMG/M

Ga0214230_128550

Not Available

605

Open in IMG/M

Ga0214230_128976

Not Available

598

Open in IMG/M

Ga0214230_129343

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

593

Open in IMG/M

Ga0214230_136741

Not Available

508

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0214230_100260	Ga0214230_1002601	F086266	MPLDKTVRFANKFDFDAIYKILEHFCHTHRFEILKDEAKWSRQYVGKQLSMILAGAGFILIAEDLSGVLVAMKAPCFFIEGEYSLHEIMWHSTNDKTSLKMFKKFIEIGTEMKKTGEIKEAHFSCFTDSDFSRYGATKLQNT
Ga0214230_100624	Ga0214230_1006241	F067363	TDLIIHKGDNPIGFAEVEVRQWNPYCPFDTIHVPVRKKHMLEVPKTLFFALNQDMTHAYWIKGLTALAFPYWEMRDDTKHELYYDVPKHLFKYVDLTELF
Ga0214230_102794	Ga0214230_1027943	F077312	MIKLIEILKKEKSSELHFPDGFQPAKTVPEGGAMCANCAKWNKEKQLCEGKYYIDWNGNGEIHNDATKYVCIWWVKKGKK
Ga0214230_103479	Ga0214230_1034795	F083609	MGTHILPFQILNDGYRNATLKIAGYVNGTDITAYTVLDPSTLSQIDAQGTIPKLVRIKRINFDIQDGIQVTLNWDGATPALLWECAGRGEIKAASFGGITDNATTPNGKITLTTFGGAATTALTSFTIVLEIIKD
Ga0214230_105868	Ga0214230_1058681	F057849	MGKIQEWYDSWLLEQAKEAVANGNFKPHPPKYVFPSDIKKALRQQAEECEHAERDPKTGISTWPKETTLEWQAADLLDEYLAEIRDYENMRDKFVELWLDMRELLGGDNDETLA
Ga0214230_107980	Ga0214230_1079807	F024029	SGTDIEERWIKQYGWVRPSEQPEYQAKYKYYQELPLRKLDDVAKAQYESVLKRAKVVRIK
Ga0214230_110873	Ga0214230_1108735	F070862	MTKYFVVFTEESTKDYGYYVDAPDKESAYELAEGKYFEMAEPDSVSTSYSKTHGYLVEEL
Ga0214230_112429	Ga0214230_1124294	F078138	MIPAMRNAHATHVDFGFLRGIISSNPNFMPSNIDMVLERKGMFLFGEWKREDEEIKTGQKILLKELAWIHRVLLITGYVDNQPHISLIQQVLPNGNLKVVGKSVADLIKYIQDWYKDAENND
Ga0214230_116300	Ga0214230_1163001	F008619	MAGFQDIFEIQQKMTVNNRRLIAQQVSRSGQLRIAQYLTSVPWVFSVTPHNYLYYPTARAIIQQIDNLDRQLPQTITFNSPNLSWFTAMQGTATAATLASTPLPNSQVLTLSSNGTFKAGDFIEIGGYVYKVTADSSGTTVYINRPIIGSPSAGATVTMGNAVSFNLIAEQCP
Ga0214230_118290	Ga0214230_1182903	F020485	APMKLFCKAKQHWEITDGKLILGAESDEYLAVQLAKMTARLEAEIRLEIYDQICALDLVKDRKRLVKLGIENVALIVQDACAQIAIGEIK
Ga0214230_126041	Ga0214230_1260411	F038203	ASYPVIQQAGLLLLTHLYNNRSDTTVGQLAKLPFGVDQLLRPYKPLVL
Ga0214230_126495	Ga0214230_1264951	F002824	RARCQNKSAGQRRSKMTKLTNTALKPGNGKPNAEEMAIVKTILNPAENKTEEKKPVLQIEPEKPVIPAPEPKKEMTMLEKILKIENLQLVIEKRAKLVQTRSELDRFQISSNDFNCTMRLNDSDGNVFTTSFTPGIKKVIEFLKTSFDASITEAENKITF
Ga0214230_126505	Ga0214230_1265053	F085373	MSRAAAVIFIQSERETRLAIGGATNGWKRVDYTVVLQVFHHSMQNNAEDAMADFDTLVDNIKGTLRASHNFGDSSQVNVWQGAEPAIDCLYGEPVTSDNGATETFAEIRFDVTQMIQA
Ga0214230_128550	Ga0214230_1285501	F098804	LAALLNGGNEKHLEQIIKRQKDPIRLAEKGYLSNNLGKNKINFLTLHLVRKYLKN
Ga0214230_128976	Ga0214230_1289762	F023521	MKDAIIYAGYSRLADGTMKFRTATNEARVNQLVAFGEEVHMILINPVYSKSAAAKELLRLDHANGARALEQFYTKFVKDENPFRVVKVKVPTVFMQQLTGAKIEEEPMTAKEARKI
Ga0214230_129343	Ga0214230_1293431	F053292	MPNLTTILAVSEQVTINDQRFVGQVVSRNQRISTSEILTVVPFQFEFKPNDYLLYSQNRDLLANLRYYDKSLTQYLNF
Ga0214230_136741	Ga0214230_1367411	F080800	MNHKDQIVLSPDARKAIAQVKMEMVKAAGVKLENIFPSLGAKSEKIHHTKSLSHTRKGSGRKHQQGKA

Scaffold ID

Protein ID

Family

Sequence

Ga0214230_100260

Ga0214230_1002601

F086266

MPLDKTVRFANKFDFDAIYKILEHFCHTHRFEILKDEAKWSRQYVGKQLSMILAGAGFILIAEDLSGVLVAMKAPCFFIEGEYSLHEIMWHSTNDKTSLKMFKKFIEIGTEMKKTGEIKEAHFSCFTDSDFSRYGATKLQNT

Ga0214230_100624

Ga0214230_1006241

F067363

TDLIIHKGDNPIGFAEVEVRQWNPYCPFDTIHVPVRKKHMLEVPKTLFFALNQDMTHAYWIKGLTALAFPYWEMRDDTKHELYYDVPKHLFKYVDLTELF

Ga0214230_102794

Ga0214230_1027943

F077312

MIKLIEILKKEKSSELHFPDGFQPAKTVPEGGAMCANCAKWNKEKQLCEGKYYIDWNGNGEIHNDATKYVCIWWVKKGKK

Ga0214230_103479

Ga0214230_1034795

F083609

MGTHILPFQILNDGYRNATLKIAGYVNGTDITAYTVLDPSTLSQIDAQGTIPKLVRIKRINFDIQDGIQVTLNWDGATPALLWECAGRGEIKAASFGGITDNATTPNGKITLTTFGGAATTALTSFTIVLEIIKD

Ga0214230_105868

Ga0214230_1058681

F057849

MGKIQEWYDSWLLEQAKEAVANGNFKPHPPKYVFPSDIKKALRQQAEECEHAERDPKTGISTWPKETTLEWQAADLLDEYLAEIRDYENMRDKFVELWLDMRELLGGDNDETLA

Ga0214230_107980

Ga0214230_1079807

F024029

SGTDIEERWIKQYGWVRPSEQPEYQAKYKYYQELPLRKLDDVAKAQYESVLKRAKVVRIK

Ga0214230_110873

Ga0214230_1108735

F070862

MTKYFVVFTEESTKDYGYYVDAPDKESAYELAEGKYFEMAEPDSVSTSYSKTHGYLVEEL

Ga0214230_112429

Ga0214230_1124294

F078138

MIPAMRNAHATHVDFGFLRGIISSNPNFMPSNIDMVLERKGMFLFGEWKREDEEIKTGQKILLKELAWIHRVLLITGYVDNQPHISLIQQVLPNGNLKVVGKSVADLIKYIQDWYKDAENND

Ga0214230_116300

Ga0214230_1163001

F008619

MAGFQDIFEIQQKMTVNNRRLIAQQVSRSGQLRIAQYLTSVPWVFSVTPHNYLYYPTARAIIQQIDNLDRQLPQTITFNSPNLSWFTAMQGTATAATLASTPLPNSQVLTLSSNGTFKAGDFIEIGGYVYKVTADSSGTTVYINRPIIGSPSAGATVTMGNAVSFNLIAEQCP

Ga0214230_118290

Ga0214230_1182903

F020485

APMKLFCKAKQHWEITDGKLILGAESDEYLAVQLAKMTARLEAEIRLEIYDQICALDLVKDRKRLVKLGIENVALIVQDACAQIAIGEIK

Ga0214230_126041

Ga0214230_1260411

F038203

ASYPVIQQAGLLLLTHLYNNRSDTTVGQLAKLPFGVDQLLRPYKPLVL

Ga0214230_126495

Ga0214230_1264951

F002824

RARCQNKSAGQRRSKMTKLTNTALKPGNGKPNAEEMAIVKTILNPAENKTEEKKPVLQIEPEKPVIPAPEPKKEMTMLEKILKIENLQLVIEKRAKLVQTRSELDRFQISSNDFNCTMRLNDSDGNVFTTSFTPGIKKVIEFLKTSFDASITEAENKITF

Ga0214230_126505

Ga0214230_1265053

F085373

MSRAAAVIFIQSERETRLAIGGATNGWKRVDYTVVLQVFHHSMQNNAEDAMADFDTLVDNIKGTLRASHNFGDSSQVNVWQGAEPAIDCLYGEPVTSDNGATETFAEIRFDVTQMIQA

Ga0214230_128550

Ga0214230_1285501

F098804

LAALLNGGNEKHLEQIIKRQKDPIRLAEKGYLSNNLGKNKINFLTLHLVRKYLKN

Ga0214230_128976

Ga0214230_1289762

F023521

MKDAIIYAGYSRLADGTMKFRTATNEARVNQLVAFGEEVHMILINPVYSKSAAAKELLRLDHANGARALEQFYTKFVKDENPFRVVKVKVPTVFMQQLTGAKIEEEPMTAKEARKI

Ga0214230_129343

Ga0214230_1293431

F053292

MPNLTTILAVSEQVTINDQRFVGQVVSRNQRISTSEILTVVPFQFEFKPNDYLLYSQNRDLLANLRYYDKSLTQYLNF

Ga0214230_136741

Ga0214230_1367411

F080800

MNHKDQIVLSPDARKAIAQVKMEMVKAAGVKLENIFPSLGAKSEKIHHTKSLSHTRKGSGRKHQQGKA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300020697: Freshwater microbial communities from Trout Bog Lake, WI - 22MAY2008 hypolimnion

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences