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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300020241 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0117946 | Gp0115933 | Ga0211479 |
| Sample Name | Marine microbial communities from Tara Oceans - TARA_A100001011 (ERX291768-ERR318619) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | CEA Genoscope |
| Published? | Y |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 16336339 |
| Sequencing Scaffolds | 17 |
| Novel Protein Genes | 18 |
| Associated Families | 17 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae | 1 |
| Not Available | 11 |
| All Organisms → Viruses → Predicted Viral | 1 |
| All Organisms → Viruses → environmental samples → uncultured Mediterranean phage | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED275 | 1 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Caudoviricetes sp. | 2 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine biome → marine water body → sea water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | TARA_030 | |||||||
| Coordinates | Lat. (o) | 33.93 | Long. (o) | 32.7322 | Alt. (m) | N/A | Depth (m) | 70 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002166 | Metagenome / Metatranscriptome | 588 | N |
| F004819 | Metagenome / Metatranscriptome | 422 | Y |
| F005546 | Metagenome / Metatranscriptome | 397 | Y |
| F018809 | Metagenome / Metatranscriptome | 233 | Y |
| F021555 | Metagenome / Metatranscriptome | 218 | N |
| F023949 | Metagenome / Metatranscriptome | 208 | Y |
| F025308 | Metagenome | 202 | N |
| F027868 | Metagenome / Metatranscriptome | 193 | Y |
| F036279 | Metagenome / Metatranscriptome | 170 | N |
| F039165 | Metagenome / Metatranscriptome | 164 | Y |
| F048369 | Metagenome / Metatranscriptome | 148 | N |
| F055779 | Metagenome / Metatranscriptome | 138 | N |
| F057442 | Metagenome | 136 | Y |
| F079298 | Metagenome / Metatranscriptome | 116 | Y |
| F088348 | Metagenome | 109 | N |
| F099847 | Metagenome / Metatranscriptome | 103 | N |
| F101347 | Metagenome / Metatranscriptome | 102 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0211479_100627 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae | 2072 | Open in IMG/M |
| Ga0211479_101183 | Not Available | 1273 | Open in IMG/M |
| Ga0211479_101206 | All Organisms → Viruses → Predicted Viral | 1260 | Open in IMG/M |
| Ga0211479_101287 | Not Available | 1202 | Open in IMG/M |
| Ga0211479_101760 | Not Available | 987 | Open in IMG/M |
| Ga0211479_101845 | Not Available | 951 | Open in IMG/M |
| Ga0211479_101993 | Not Available | 909 | Open in IMG/M |
| Ga0211479_102107 | Not Available | 877 | Open in IMG/M |
| Ga0211479_102168 | Not Available | 861 | Open in IMG/M |
| Ga0211479_102843 | Not Available | 728 | Open in IMG/M |
| Ga0211479_102913 | All Organisms → Viruses → environmental samples → uncultured Mediterranean phage | 720 | Open in IMG/M |
| Ga0211479_103035 | Not Available | 701 | Open in IMG/M |
| Ga0211479_103378 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED275 | 658 | Open in IMG/M |
| Ga0211479_103614 | Not Available | 632 | Open in IMG/M |
| Ga0211479_103732 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Caudoviricetes sp. | 621 | Open in IMG/M |
| Ga0211479_105044 | Not Available | 524 | Open in IMG/M |
| Ga0211479_105468 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Caudoviricetes sp. | 500 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0211479_100627 | Ga0211479_1006276 | F048369 | DRDSFIEDLADNTPNEGQFDKFMEAEVHDAEEDLLAGKTFKKLKDEVKKGDKNVXXSN |
| Ga0211479_101183 | Ga0211479_1011833 | F002166 | MQMMFQQFKTKLAEQKVDSPKETAQFKKLSPAEKMAVKDIYIMIGKTKGDIISKIDGIIKQVARKRNVKVSSIEDYIDNEILS |
| Ga0211479_101206 | Ga0211479_1012063 | F025308 | MISDEDFRFLLQESNGCKKALEIGTGTGKSSAALKLNCEVYSIDKDDIFEYNIDINRFNCESKEYWLNYMHYDFDFVFIDGSIEKIDCEEILKRTKNSFKIVFHDYMPKEDKDHGKNKGWYNMKVFKESALLNYDMKETQGGSHCGMLVLNKDK |
| Ga0211479_101287 | Ga0211479_1012873 | F005546 | SGNNESKISLIECYYQIKGTGTLTISAVSETNNLTFTGRGKYGLRPDQLKFGDDKQILLTTDSNVESYLLITEFRRNN |
| Ga0211479_101760 | Ga0211479_1017601 | F004819 | MQYYPQDKDPRLDERSARFHARVLKEDLATLPFVLDTCNRDINIARASTYVTWDHDKEMWAEVDHLMMNFYVQARTSETRDELEDKINRGVVELLKGPRYYEQAKVYCMIDMDYPEDESIYDIVKVPKKDRKKAGWGISGSEGDIVYHVTLHVQECNNTDLTIYDNVDRGDFFDLNGNNLESPMADLERIVNGR |
| Ga0211479_101845 | Ga0211479_1018452 | F036279 | MKGTRHSLKTLFIIFSFVGLQACSVPFANGVTGQDIIKIANAGKNIKNITKEGATEELITETKNVLRSIQNGGKAQR |
| Ga0211479_101993 | Ga0211479_1019932 | F018809 | MIKNLIIIGLFAIVFTQTDIGITDVFNYVELALDKIQEIVYTMKRSV |
| Ga0211479_102070 | Ga0211479_1020701 | F023949 | MSKENIGKFVNSLQKGDNKQAGDDLKNALADKVSSALDDAKTDVARSAFTGQQGADAPEANVFSGNDISAETPATPEASSDEVAQ |
| Ga0211479_102107 | Ga0211479_1021071 | F099847 | MFDVLIYRILDKVETTCKKVREYMINKSLPNPCKSASEWRKDYEKWKKNSTK |
| Ga0211479_102168 | Ga0211479_1021681 | F027868 | MDYLALKIPADIEQKITSHTVTDQPEPEEGGGYPFKGDNGAYELCGCDMIQIVPAAYEDIRRKHYLDGDLYCDEEGLMNGKERNWRASQMRYWYMWQIQDQLTEDWRDWTNIVGDACFVVPATDDNLKIMEDILDS |
| Ga0211479_102843 | Ga0211479_1028432 | F055779 | YCSTNNSFYCCYRANGFCVTKTDNNQCGIICNQCNGAWVACAYGGETNKPGLNSCVSAFGCYPSCICMFNHHIPTPAGQGSKEGRMIVYTNDDGNGFAQWSGQGHHQHRAGLGSGRFPTGGIPWSSCWGFSGACGCYENDGCVPVLPVGTGGRGPNPCPGVRDHAIRGGFGAVRIRFIS |
| Ga0211479_102913 | Ga0211479_1029131 | F088348 | VDTSDWFKSLSETGKERKQDKNSIMNRAKDKRSWFCVHPFAEMFIELDGSYKACCLAGKSDKHTINNTPIKTWMEDSDYLKNLRKEMLDPAKHGTKAINEHCIRCVKDETRYGKSRRTHHMWRESNSKERWDRIERNVRMYEQSGQWTFDERIMQIQLKSFGIECNLDCHMCNHDSSSMRIDMMDKHGVYSEKMFGTMKNTKRKIKLVEDNLNKIDRKSVVDQIKELAPYLNSIKIIGG |
| Ga0211479_103035 | Ga0211479_1030351 | F021555 | YKSTTTKGNMKQTYITKQQLHTFIDTQIEKHKSKKGRAFFYKKPKRLEIVGEKRVMRFDTKDRKFQVDGTTGKRLYKKGGKRTTTPEHNMLVTDLDVREGYKFRNVPMNQRLRYLLIGKKAIKFSYLADLDSFKVEFPKATRNLIKNLYNKKFEDFEQEKKHG |
| Ga0211479_103378 | Ga0211479_1033783 | F039165 | KTLSTKLYEVKYNNPKTPERDAEVNHLIEDIQATCRLIANDKKPYDNG |
| Ga0211479_103614 | Ga0211479_1036141 | F079298 | GGIKISYLLKIFLIIFVAIQPLHSYTTINISNPDDNNGFEHLHAELCGTKYSDSISHTQKISDLLDKINTAIISEMAVDCVCCESLDITSLDLFNLTSNNFLLSKVSLTIDKNFYAPNVKTLIPYTKQVRAPPIV |
| Ga0211479_103732 | Ga0211479_1037322 | F101347 | MIELFLEIPMELQVIILSCITMGVIQFIKDEKEKTRQKYESEKSIKARTSK |
| Ga0211479_105044 | Ga0211479_1050442 | F002166 | MNQLSFQKFKSSLVELKEDSPKETAEFKKLSPAEKQAVKDVFTLLGNTKGEIISKIDGIIKQVAKKRNVKVSAIEDYF |
| Ga0211479_105468 | Ga0211479_1054682 | F057442 | MNNNTEYCLNCGHESHCGENCYKDYGESEKTLCCTNCRCENDGKSGKLDED |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |