NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F099847

Metagenome / Metatranscriptome Family F099847

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F099847
Family Type Metagenome / Metatranscriptome
Number of Sequences 103
Average Sequence Length 52 residues
Representative Sequence MLDGIIYTILNWVDTTSHKIRQYMINKSLPNPCKSASEWRKDYEKWKKNSTK
Number of Associated Samples 84
Number of Associated Scaffolds 103

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 31.07 %
% of genes near scaffold ends (potentially truncated) 20.39 %
% of genes from short scaffolds (< 2000 bps) 70.87 %
Associated GOLD sequencing projects 75
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (49.515 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine
(40.777 % of family members)
Environment Ontology (ENVO) Unclassified
(78.641 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(93.204 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68
1JGI20151J14362_101813572
2GOS2234_10531912
3GOS2243_10558583
4JGI26064J46334_10405281
5Ga0068511_10268132
6Ga0066867_100024446
7Ga0066845_100196962
8Ga0066845_101997251
9Ga0066830_100277222
10Ga0066865_101718981
11Ga0066837_100695132
12Ga0076924_11980672
13Ga0066371_100641411
14Ga0066836_100195647
15Ga0066836_104359591
16Ga0068486_10195413
17Ga0068500_11448239
18Ga0068500_11509383
19Ga0099954_10195385
20Ga0099954_10268332
21Ga0066372_101152833
22Ga0066372_103526662
23Ga0079245_12610181
24Ga0079228_10049821
25Ga0102954_11440811
26Ga0102960_10006167
27Ga0115099_103135302
28Ga0115011_100120477
29Ga0115011_104086952
30Ga0115011_111369041
31Ga0115100_104991822
32Ga0138358_11049492
33Ga0160422_101882523
34Ga0160422_102545012
35Ga0160423_100818144
36Ga0163110_103193682
37Ga0163110_103854862
38Ga0163108_105991462
39Ga0163180_106166451
40Ga0163180_107309962
41Ga0163179_1000777615
42Ga0163111_100651261
43Ga0163111_105658002
44Ga0163111_107261962
45Ga0163111_127781092
46Ga0181403_10138482
47Ga0181396_11379651
48Ga0181393_10435802
49Ga0211479_1021071
50Ga0211529_10618831
51Ga0211526_10233482
52Ga0211648_10432492
53Ga0211663_10090103
54Ga0211542_10465281
55Ga0211626_10648142
56Ga0211647_102560041
57Ga0211527_100353491
58Ga0211652_100881422
59Ga0211476_100592313
60Ga0211646_100199973
61Ga0211705_100202201
62Ga0211617_100033292
63Ga0211499_102308861
64Ga0211532_100484711
65Ga0211659_100978712
66Ga0211651_101385922
67Ga0211516_102553122
68Ga0211516_103766601
69Ga0211644_102064201
70Ga0211528_100618473
71Ga0211622_102503482
72Ga0211576_101178532
73Ga0211559_100224087
74Ga0211564_101486172
75Ga0211564_101691712
76Ga0211641_103279402
77Ga0211643_105163412
78Ga0211643_105628072
79Ga0211676_106034031
80Ga0211640_105419801
81Ga0211713_100144093
82Ga0211713_100421661
83Ga0211475_103874182
84Ga0211543_1000341813
85Ga0211579_100001222
86Ga0211503_100379206
87Ga0206684_10011362
88Ga0206679_100205592
89Ga0206688_110755222
90Ga0206690_104343991
91Ga0206123_100390503
92Ga0209630_1001673410
93Ga0208410_10348263
94Ga0207993_10224643
95Ga0208764_100133866
96Ga0209404_100157994
97Ga0185543_10974671
98Ga0185543_11098172
99Ga0315318_101952213
100Ga0310344_104383982
101Ga0310344_109437822
102Ga0315316_101892041
103Ga0310342_1001388612
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 63.46%    β-sheet: 0.00%    Coil/Unstructured: 36.54%
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Variant

5101520253035404550MLDGIIYTILNWVDTTSHKIRQYMINKSLPNPCKSASEWRKDYEKWKKNSTKSequenceα-helicesβ-strandsCoilSS Conf. score
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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
50.5%49.5%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Marine
Seawater
Seawater
Marine Water
Marine
Surface Seawater
Seawater
Marine
Marine
Seawater
Marine
Marine
Seawater
Pelagic Marine
Seawater
Pond Water
Water
22.3%2.9%4.9%3.9%6.8%2.9%3.9%40.8%2.9%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI20151J14362_1018135723300001346Pelagic MarineMLDGIVYTILNWVDNTSHKIRKYMIDKSLPNPCKSAKQWRKDYEKWKKNSTK*
GOS2234_105319123300001964MarineMFDVLIYRILDKVETTCGKIREWLINRSLPNPCKSASEWRKDYEKWKKNSTK*
GOS2243_105585833300001965MarineMLDGIIYTILNWVDRTSQRIRKYMIERSLPKPCKSANEWRKDYEKWKDNSTK*
JGI26064J46334_104052813300003185MarineMLDGIIYTILNWVDSTSHKIRQYMINKSLPNPCKSASEWRKDYEKWKKNSTK*
Ga0068511_102681323300005057Marine WaterMLDGIIYTILNWVDTTSARIRKYMIEKSLPNPCKSASQWRKDYEKWKKNSTK*
Ga0066867_1000244463300005400MarineMLDGIIYTILNWVDRTSHKIRQYMINKSLPNPCKSASEWRKDYEKWKDNSTK*
Ga0066845_1001969623300005432MarineMLDGIIYTILNWVDTTSARIRKYMIEKSLPNPCKSASEWRKDYEKWKKNSTK*
Ga0066845_1019972513300005432MarineMLDGIIYTILNWVDNTSQKIRKYMIEKSLPNPCKSASEWRKDYEKWKKNQHK*
Ga0066830_1002772223300005433MarineNMLDGIIYTILNWVDNTSQKIRKYMIEKSLPNPCKSASQWRKDYEKWKKNSTK*
Ga0066865_1017189813300005523MarineMLDGIIYTILNWVDNTSQKIRKYMIEKSLPNPCKSASEWRKDYE
Ga0066837_1006951323300005593MarineMLDGIIYTILNWVDTTSAKVRQYMINKSLPNPCKSAAEWRKDYDKWKKNNTK*
Ga0076924_119806723300005747MarineMLDGIIYTILNWVDNTSHKIRKYMIDKSLPNPCKSAKQWRKDYEKWRKNSTK*
Ga0066371_1006414113300006024MarineMLDGIIYTLLNWVDRTSHKIRQYMINKSLPNPCKSASEWRKDYEKWKKNNTK*
Ga0066836_1001956473300006166MarineMLDGIIYTILNWVDTTSAKVRKYMIEKSLPNPCKSASEWRKDYDKWKENQHK*
Ga0066836_1043595913300006166MarineMLDGLIYKILDWIESTCKRVREHLINKSLPNPCKSASEWRKDYEKWKKSSINNNESD*
Ga0068486_101954133300006329MarineMFDVLIYRILDKVETTCKKVREYMINKSLPNPCKSASEWRKDYEKWKKNSTK*
Ga0068500_114482393300006332MarineMFDVLIYRILDKVETTCKKIREYMINKSLPNPCKSASEWRKDYEKWKKNSTK*
Ga0068500_115093833300006332MarineMFDVLIYRILDKVETTCKKVREYMINKSLPSPCKSASEWRKDYEKWKENSTK*
Ga0099954_101953853300006350MarineMLDGIIFTILNWVDTTSARIRKYMIEKSLPNPCKSASEWRKDYEKWKENSTK*
Ga0099954_102683323300006350MarineMFDVLIYRILDKVETTCKKIREYMINKSLPSPCKSASEWRKDYEKWKENSTK*
Ga0066372_1011528333300006902MarineMLEGFVYKLLDKVESTCKRVREHLINKSLPNPCKSAKEWKKDYDSWKKTSINNNDTD*
Ga0066372_1035266623300006902MarineMLDGFVYKLLDWTESTCKRIREHLINKSLPNPCKSAKEWRNDYEKWKKSRINNNDTD*
Ga0079245_126101813300007336MarineILDKVETTCKKVREYMINKSLPNPCKSASEWRKDYEKWKKNSTK*
Ga0079228_100498213300007341MarineTILNWVDSTSHKIRQYMINKSLPNPCKSASEWRKDYEKWKKNSTK*
Ga0102954_114408113300007778WaterMLDGIIYTILNWVDTTSHKIRQYMINKSLPNPCKSASEWRKDYEKWKK
Ga0102960_100061673300009000Pond WaterMLDGIIYTILNWVDTTSHKIRQYMINKSLPNPCKSASEWRKDYEKWKKNSTK*
Ga0115099_1031353023300009543MarineMLDGIIYTILNWVDRTSHKIRQYMINKSLPNPCKSASEWRKDYEKWKENSTK*
Ga0115011_1001204773300009593MarineMLDGIIYSILNWVDTTSAKVRKYMIEKSLPNPCKSASEWRKDYDKWKKNQHK*
Ga0115011_1040869523300009593MarineMFDGLIYKILDKVESTCKRVREHLINKSLPNPCKSASEWRKDYEKWKKSSINNNESD*
Ga0115011_1113690413300009593MarineMLDGIIYTILNWVDRTSQRIRKYMIEKSLPSPCKSASEWRKDYEKWKDNSTK*
Ga0115100_1049918223300009608MarineMLDGIIYTILNWVDRTSHKIRQYMINKSLPNPCKSASEWRKDYEKWKKNSTK*
Ga0138358_110494923300011320MarineVYKLLDKVESTCKRVREHLINKSLPNPCKSAKEWKKDYDSWKKTSINNNDTD*
Ga0160422_1018825233300012919SeawaterMFDVLIYRILDKVETTCGKIREWLINRQLPNPCKSASEWRKDY
Ga0160422_1025450123300012919SeawaterMLDGIIYTILNWVDRTSQRIRKYMVERSLPKPCKSASEWRKDYEKWKKNSTK*
Ga0160423_1008181443300012920Surface SeawaterMLDGIIYTILNWVDNTSQKIRQYMINKSLPNPCKSASEWRKDYEKWKKNSTK*
Ga0163110_1031936823300012928Surface SeawaterMFDVLIYRILDKVETTCKKIREYMIEKSLPNPCKSASEWRKDYEKWKKNSTK*
Ga0163110_1038548623300012928Surface SeawaterMFNVFIYRILDRVETTCEKVREWLIKRDLPNPCKSAKDWRKDYEKWKKNNTK*
Ga0163108_1059914623300012950SeawaterMLEGFVYKLLDKVESTCKRVREHLINKSLPNPCKSAKEWKKDYDNWKKSSINNNDSD*
Ga0163180_1061664513300012952SeawaterMLDGIIYTILNWVDSTSHKIRQYMINKSLPNPCKSASKWRKDYEKWKKNSTK*
Ga0163180_1073099623300012952SeawaterMFDVLIYRILDRVETTCKKIREWLINRSLPSPAKSADEWRKDYEKWKKNSTKYKRGR*
Ga0163179_10007776153300012953SeawaterMLDGIIYTILNWVDTTSKRIREYMINKSLPSPCKSASEWRKDYDKWKKNQYK*
Ga0163111_1006512613300012954Surface SeawaterMLDGIIYTILNWVDNTSQKIRQYMINKSLPNPCKSASEWRKDYEKWKKNNTK*
Ga0163111_1056580023300012954Surface SeawaterMFNVFIYRILDRVETTCEKVREWLIKRDLPNPCKSASEWRKDYEKWKKNNTK*
Ga0163111_1072619623300012954Surface SeawaterMLDGIIYTILNWVDTTSARIRKYMIEKSLPNPCKSASEWRKDYEKWKKNQHK*
Ga0163111_1277810923300012954Surface SeawaterLDWIESTCKRVREHLINKSLPNPCKSASEWRKDYEKWKKSSINNNESD*
Ga0181403_101384823300017710SeawaterMLDGIIYTILNWVDRTSHKIRQYMINKSLPNPCKSASEWRKDYEKWKKNSTK
Ga0181396_113796513300017729SeawaterMLDGIIYTILNWVDSTSHKIRQYMINKSLPNPCKSASEWRKDYEKWKENSTK
Ga0181393_104358023300017748SeawaterMLDGIIYTILNWVDSTSHKIRQYMINKSLPNPCKSASEWRKDYEKWKKNNTK
Ga0211479_10210713300020241MarineMFDVLIYRILDKVETTCKKVREYMINKSLPNPCKSASEWRKDYEKWKKNSTK
Ga0211529_106188313300020258MarineYIDNMLDGIIYTILNWVDNTSQKIRQYMINRSLPNPCKSASEWRKDYEKWKKNNTK
Ga0211526_102334823300020264MarineMLDGIIYTILNWVDTTSARIRKYMIEKSLPNPCKSASQWRKDYEKWKKNSTK
Ga0211648_104324923300020267MarineMFNVFIYRILDRVETTCEKVREWLIKRDLPNPCKSASEWRKDYEKWKKNNTK
Ga0211663_100901033300020292MarineMLDGIIFTILNWVDTTSARIRKYMIEKSLPNPCKSASEWRKDYEKWKENSTK
Ga0211542_104652813300020312MarineMFDVLIYRILDKVETTCSKIREWLVNRSLPKPCKSASEWRKDYEKWKDNSTK
Ga0211626_106481423300020343MarineMFDGLIYTILEKVENTCKKVRKYMIEKSLPNPCKSASEWRKDYEKWKKNSTK
Ga0211647_1025600413300020377MarineMLDGIIYTILNWVDTTSARIRKYMIEKSLPNPCKSASEWRKDYEKWKKNSTK
Ga0211527_1003534913300020378MarineMFDVLIYRILDKVETTCSKIREWLVNRSLPKPCKSASEWRKDYEKWKKNST
Ga0211652_1008814223300020379MarineMLDGIIYSILNWVDTTSAKVRKYMIEKSLPNPCKSASEWRKDYDKWKKNQHK
Ga0211476_1005923133300020381MarineMFDVLIYRILDRVEITCKKIREYMINKSLPSPCKSASEWRKDYEKWK
Ga0211646_1001999733300020383MarineMLEGFVYRLLDKVESTCKKVREHLINKSLPHPIKSAGEWRKDYEKWKKSSINNNDSD
Ga0211705_1002022013300020395MarineMLDGLIYKILDWVESTCKRVREHLINKSLPNPCKSASEWRKDYEKWKKSSINNNESD
Ga0211617_1000332923300020401MarineMFDYLIYRILDRVETTCKKVREYMINKSLPNPCKSASEWRKDYEKWKKNSTK
Ga0211499_1023088613300020402MarineMLDGIIYTILNWVDRTSQRIRKYMIEKSLPNPCKSASEWRKDYEKWKDNSTK
Ga0211532_1004847113300020403MarineMFDVLIYRILDKVETTCSKIREWLVNRSLPKPCKSASEWRKDYEKWKKNSTK
Ga0211659_1009787123300020404MarineMLDGIIYTILNWVDTTSARIRKYMIEKSLPNPCKSASEWRKDYEKWKKNQHK
Ga0211651_1013859223300020408MarineMLDGIIYTILNWVDRTSQRIRKYMIERSLPKPCKSASEWRKDYEKWKKNSTK
Ga0211516_1025531223300020413MarineMFDVLIYRILDRVETTCKKIREWLINRSLPSPAKSADEWRKDYEKWKKNSTKYKRGR
Ga0211516_1037666013300020413MarineMLDGIIYTILNWVDSTSHKIRQYMINKSLPNPCKSASEWRKDYEKWKKNSTK
Ga0211644_1020642013300020416MarineMLDGIIYTILNWVDNTSQKIRQYMINKSLPNPCKSASEWRKDYEKWK
Ga0211528_1006184733300020417MarineMFDVLIYRILDKVETTCSKIREWLVNRSLPKPCKSASEWRKDYEKWK
Ga0211622_1025034823300020430MarineMFNVFIYRILDRVETTCEKVREWLIKRDLPNPCKSARDWRKDYEKWKKNNTK
Ga0211576_1011785323300020438MarineMLDGIIYTILNWVDRTSHKIRQYMINKSLPNPCKSASEWRKDYEKWKENSTK
Ga0211559_1002240873300020442MarineMLDGIIYTILNWVDRTSQRIRKYMIERSLPKPCKSASEWRKDYEKWKDNSTK
Ga0211564_1014861723300020445MarineMLDGIIYTLLNWVDRTSHKIRQYMINKSLPNPCKSASEWRKDYEKWKKNQHK
Ga0211564_1016917123300020445MarineMLDGLIYKILDWIESTCKRVREHLINKSLPNPCKSASEWRKDYEKWKKSSINNNESD
Ga0211641_1032794023300020450MarineMLDGIIFTILNWVDTTSARIRKYMIEKSLPNPCKSASEWRKDYEKWKQNSTK
Ga0211643_1051634123300020457MarineMLDGLIYKILDWIESTCKRVREHLINKSLPNPCKSASEWRKDYE
Ga0211643_1056280723300020457MarineMFNVFIYRILDRVETTCEKVREWLIKRDLPNPCKSAKDWRKDYEKWKKNNTK
Ga0211676_1060340313300020463MarineDKMLGKXYSSNMFDVILFRILDKVENTCKKTREWLINRSLPNPAKSADEWRKDYEKWKKNSTK
Ga0211640_1054198013300020465MarineMLDGIIFTILNWVDTTSARIRKYMIEKSLPNPCKSASEWRKDYEKWKKNQHK
Ga0211713_1001440933300020467MarineMLDGLIYKLLDWTESTCKRIREHLINKSLPNPCKSASEWRKDYEKWKKSSINNNESD
Ga0211713_1004216613300020467MarineMFDVLIYRILDKVETTCKKIREYMINKSLPSPCKSASEWRKDYEKWKENSTK
Ga0211475_1038741823300020468MarineMFDVILFRILDKVENTCKKTREWLINRSLPNPAKSADEWRKDYEKWKKNSTK
Ga0211543_10003418133300020470MarineMLDGLIYKLLDWTESTCKRIREHLINKSLPNPCKSASEWRKDYEKWKKSQYK
Ga0211579_1000012223300020472MarineMLDGIIYTILNWVDTTSKRIREYMINKSLPSPCKSASEWRKDYDKWKKNQYK
Ga0211503_1003792063300020478MarineMLDGLIYKLLNWTESTCKRIREHLINKSLPNPCKSASEWRKDYEKWKKSQYK
Ga0206684_100113623300021068SeawaterMLDGFVYKLLDKIESTCKKVREHLINKSLPNPCKSAKEWRNDYEKWKKSRINNNDTD
Ga0206679_1002055923300021089SeawaterMLDGFVYKLLDKVESTCKKVREHLINKSLPNPCKSAKEWRNDYEKWKKSSINNNDTD
Ga0206688_1107552223300021345SeawaterFVYKLLDKIESTCKKVREHLINKSLPNPCKSAKEWRNDYEKWKKSRINNNDTD
Ga0206690_1043439913300021355SeawaterKLLDKVESTCKKVREHLINKSLPNPCKSAKEWRNDYEKWKKSRINNNDTD
Ga0206123_1003905033300021365SeawaterMLDGIIYTILNWVDTTSHKIRQYMINKSLPNPCKSASEWRKDYEKWKKNSTK
Ga0209630_10016734103300025892Pelagic MarineMLDGIVYTILNWVDNTSHKIRKYMIDKSLPNPCKSAKQWRKDYEKWKKNSTK
Ga0208410_103482633300026266MarineMLDGIIYTILNWVDTTSARIRKYMIEKSLPNPCKSASEWRKDYEKWKKNNTK
Ga0207993_102246433300026270MarineMLDGIIYTILNWVDNTSQKIRKYMIEKSLPNPCKSASEWRKDYEKWKKNQHK
Ga0208764_1001338663300026321MarineMLDGIIYTILNWVDTTSAKVRKYMIEKSLPNPCKSASEWRKDYDKWKENNTK
Ga0209404_1001579943300027906MarineMLDGIIYTLLNWVDRTSHKIRQYMINKSLPNPCKSASEWRKDYEKWKKNNTK
Ga0185543_109746713300029318MarineMLDGIIYTILNWVDTTSARIRKYMIEKSLPNPCKSASQWRKDYE
Ga0185543_110981723300029318MarineMFDVLIYRILDKVETTCSKIREWLVNRSLPNPCKSASEWRKDYEKWKKNSTK
Ga0315318_1019522133300031886SeawaterMLDGFVYKLLDKIESTCKKVREHLINKSLPNPCKSAKEWRNDYEKWKKSRINNNDT
Ga0310344_1043839823300032006SeawaterMFDGLIYKILDKVESTCKRVREHLINKSLPNPCKSASEWRKDYEKWKKSSINNNESD
Ga0310344_1094378223300032006SeawaterMFDVLIYRILDKVETTCKKVREYMINKSLPSPCKSASEWRKDYEKWKENSTK
Ga0315316_1018920413300032011SeawaterMLDGIIYTILNWVDRTSHKIRQYMINKSLPNPCKSASEWRKDYEKWKEN
Ga0310342_10013886123300032820SeawaterMLEGFVYKLLDKVESTCKRVREHLINKSLPNPCKSAKEWKKDYDSWKKTSINNNDTD


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