3300020011: Rumen fluid microbial communities from healthy moose, Palmer, Alaska - F02 Viral contigs

Overview

Basic Information

• IMG/M Taxon OID: 3300020011
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121650 | Gp0160600 | Ga0207351
• Sample Name: Rumen fluid microbial communities from healthy moose, Palmer, Alaska - F02 Viral contigs
• Sequencing Status: Permanent Draft
• Sequencing Center: Ohio State University
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 9504541
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
Not Available	2
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Rumen Microbial Communities From Healthy Moose, Palmer, Alaska
• Type: Host-Associated
• Taxonomy: Host-Associated → Mammals → Digestive System → Foregut → Rumen → Moose Rumen → Rumen Microbial Communities From Healthy Moose, Palmer, Alaska

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal proximal gut

Location Information

• Location: Palmer, Alaska
• Coordinates
  • Lat. (^o): 61.5997
  • Long. (^o): -148.112
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017772	Metagenome / Metatranscriptome	238	Y
F036964	Metagenome / Metatranscriptome	169	Y
F051611	Metagenome	143	Y
F094711	Metagenome	105	Y
F102241	Metagenome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0207351_1005	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	47738
Ga0207351_1074	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	18046
Ga0207351_1128	Not Available	76141
Ga0207351_1143	Not Available	20948
Ga0207351_1218	All Organisms → cellular organisms → Bacteria	111467

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0207351_1005	Ga0207351_100521	F051611	MIKEKVTKDDLLKFNVGDLKVFTLPNYGKARSAQSYANQMKKATMGTAQPMEFKAVVGDPIPGSGQCSVTITRIS
Ga0207351_1074	Ga0207351_10742	F102241	MKTFFYTTIENQLRDDGSYGLLYDHFTDENQAYAKFYTICAAAAVSSIPYHAAHLVRSDGIMIEGKVFDRRSTEEPDEDIPDGGEE
Ga0207351_1128	Ga0207351_1128103	F017772	MSDVRLKILPPWTIVIRKLEALFDGDPQIAFNCDFSGSHPTVILACNNGDKVAALLQILPEEVNFGNISLKVIIDGTPSNRAFTSKVELFDTAFSGNPAYAYSVCPAEEGYMWIGTTYVVFNNCVVQFAADNLNDCHGIISTLYETIANELLTGPATAGVFYNTNVERAGLGMPLGEWP
Ga0207351_1143	Ga0207351_114317	F036964	MNNIVNILKIAFPALMVTGALGSLILNLIVNKQEWAVSLQWLGATLLYTALLFRNK
Ga0207351_1218	Ga0207351_1218133	F094711	MTVAVWIIAVCEVIRATQNMVQIVTIMHDTKNRDNAYSEFINSLKSTDREFVKRMLEEYNDKYGE