3300019768: Microbial mat bacterial communities from the Broadkill River, Lewes, Delaware, United States - FB_3_MG

Overview

Basic Information

• IMG/M Taxon OID: 3300019768
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0129088 | Gp0217626 | Ga0193960
• Sample Name: Microbial mat bacterial communities from the Broadkill River, Lewes, Delaware, United States - FB_3_MG
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 352043296
• Sequencing Scaffolds: 11
• Novel Protein Genes: 12
• Associated Families: 11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales	1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	1
Not Available	8
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Microbial Communities From Sediments And Microbial Mats In Various Locations
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater river biome → river → microbial mat material
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: USA: Delaware
• Coordinates
  • Lat. (^o): 38.7906
  • Long. (^o): -75.1644
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001488	Metagenome / Metatranscriptome	686	Y
F003471	Metagenome / Metatranscriptome	485	Y
F008795	Metagenome	328	N
F012917	Metagenome / Metatranscriptome	276	Y
F034579	Metagenome / Metatranscriptome	174	N
F041807	Metagenome / Metatranscriptome	159	N
F061006	Metagenome / Metatranscriptome	132	Y
F064509	Metagenome	128	N
F073262	Metagenome	120	Y
F093843	Metagenome / Metatranscriptome	106	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0193960_1058150	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales	1035
Ga0193960_1077198	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	874
Ga0193960_1092392	Not Available	788
Ga0193960_1124223	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	664
Ga0193960_1129584	Not Available	648
Ga0193960_1131745	Not Available	642
Ga0193960_1131931	Not Available	642
Ga0193960_1137078	Not Available	628
Ga0193960_1167786	Not Available	562
Ga0193960_1186844	Not Available	530

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0193960_1058150	Ga0193960_10581501	F041807	MARLELTLNFPKSFEIKTFSVKSEKKLSPLAKLILQSVQFKHF
Ga0193960_1077198	Ga0193960_10771981	F001488	MARLELTLNFPKSFQIKTFNVKSEKKLSPLAKLILQSVQFKHFYYVRDDISYLLKSNPIERDFLLQALYSIVISLQNNLSINFFDMWVYEIYINKVSTQNKFMSQKSQNLEPGEYITIKLAYGSSVSQEKK
Ga0193960_1092392	Ga0193960_10923921	F096759	IRTFELQTNYLDEEDPWKGILSAAVFAVRSTYHTTLQKSPGQLVFGRDMILNIKHTANWEYIRQRKQRLIEKNNRAENAKRKAHDYQVGDRVMLRKGSENKYEQPYSGPHPIQQVHKNGTVRLQIGAVTETVNIRRIEPYHEPPDPIHGGECSMRISRKRRRTRPR
Ga0193960_1124223	Ga0193960_11242232	F093843	VAKKLKDIPTFTKQFWKKLGDETADRIRVHTTKGGKDVNNKPFEVYSTKYRTRKASGKFKRQSSTSSKVDLQLTGDMMRNLQTRGFSRDNVVIGWSGANAQKIQWNDDMGRTVTSKSKPVTNKIEKFIFKEVDLAIARNAKEAT
Ga0193960_1129584	Ga0193960_11295841	F034579	HGIVRRAYTKTFNVDLLTEFRMEQINMNPKVELPPVPELGDLDVSAVKRQQYLLS
Ga0193960_1131745	Ga0193960_11317451	F061006	QSPKDRANDIDNTLTWLRNRGVDEPKDEDSPFQKTQSIPLPDKRSPEQKAKDLDDVLSWVRNPKENEDNPNVPDFEKVDQMLPKKPGQTPEDRAKDIDNALTWVRNRGVDQPEFDDTKPFSPMKSIPIDKRTPEQKAKDVDAILNWQRNPKENESPETEPFRKIDQMLPKKPGQSPKDRANDIDNTLTWLRNRGVDEPKDEDSPFQKTQSIPL
Ga0193960_1131931	Ga0193960_11319313	F003471	HKEITMKDKTTYQQPKPCPVPDFAGYPDKVANTQTNKIKGSGAATKGTGFSKRTA
Ga0193960_1137078	Ga0193960_11370781	F073262	HHANNCLEGLRAPVGIATQPLALQSATKTMGTNLNASLNRPKALAALQDKCPMLVASLLAVCEVATAAALPMHWSKVHATLKSAEWAACHARASDTAGSEIDKPAPLMPPPMALDLGNGRFATSSTNNPNEGMSVFCIRPSCMPSRQEHQDRNRMFEVLAQGVGAASFEVQQMALIDDEFELPQSSEEFRGCNNGHQVLSRAFLGMHS
Ga0193960_1167786	Ga0193960_11677862	F012917	LFKFLRFPLNDCGNYEKYSSFSEVNQAWDRKKHLRRKRWSQE
Ga0193960_1186844	Ga0193960_11868441	F096759	IRTFELQTNYLDEEDPWKGILSAAAFAVRSTYHTTLQKSPGQLVFGRDMILNIKHTANWEYIRQRKQKLIEKNNQAENAKRKAHDYQAGDRVMLRKGSENKYEQPYSGPHPIQQVNTNGTVRLQIGAVTQTVNIRRIEPYYAPPDPIHGGECSMRLSRKRRRTAPR
Ga0193960_1206807	Ga0193960_12068071	F064509	KTNIYGDYRICCKCGMKADVIENGNDSCASCYFKHHTNTTIEENEKRNKEIDIERERKRNEKS
Ga0193960_1206807	Ga0193960_12068072	F008795	MKKVKLESNEIELALNVAAKRFIGNVKMGKGFSYGYQGDYKKQLGDSFLGALGEVAYAKSSNSFYNGSYTDNLERYNDSDFQNNIEIRTQEKKIIIFYXLDLVRRKED