3300018760: Eukaryotic communities of water from different depths collected during the Tara Oceans expedition - TARA_N000000920

Overview

Basic Information

• IMG/M Taxon OID: 3300018760
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117946 | Gp0126093 | Ga0103504
• Sample Name: Eukaryotic communities of water from different depths collected during the Tara Oceans expedition - TARA_N000000920
• Sequencing Status: Permanent Draft
• Sequencing Center: Genoscope
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 81096459
• Sequencing Scaffolds: 5
• Novel Protein Genes: 10
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Sordariomycetes → Sordariomycetidae → Diaporthales → Gnomoniaceae → Ophiognomonia → Ophiognomonia clavigignenti-juglandacearum	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Rhizophoraceae → Rhizophora → Rhizophora mucronata	1
Not Available	2
All Organisms → cellular organisms → Eukaryota → Opisthokonta	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000020	Metagenome / Metatranscriptome	6197	Y
F000021	Metagenome / Metatranscriptome	6082	Y
F000075	Metagenome / Metatranscriptome	2622	Y
F000351	Metagenome / Metatranscriptome	1248	Y
F003503	Metatranscriptome	482	N
F022575	Metatranscriptome	213	Y
F049565	Metatranscriptome	146	N
F061214	Metagenome / Metatranscriptome	132	Y
F061505	Metatranscriptome	131	Y
F062378	Metagenome / Metatranscriptome	130	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0103504_10000191	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Sordariomycetes → Sordariomycetidae → Diaporthales → Gnomoniaceae → Ophiognomonia → Ophiognomonia clavigignenti-juglandacearum	978
Ga0103504_10000735	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Rhizophoraceae → Rhizophora → Rhizophora mucronata	624
Ga0103504_10000771	Not Available	611
Ga0103504_10000838	Not Available	593
Ga0103504_10000961	All Organisms → cellular organisms → Eukaryota → Opisthokonta	568

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0103504_10000191	Ga0103504_100001912	F061214	EIKVLSVISARCRLVNGFAKLTNISLALKETPINGGLTYEGPKVAEYPGR
Ga0103504_10000262	Ga0103504_100002621	F049565	VHLFAVVHRGVVDRGSVVDSMVSGVVDNRDGVGNNLVVLLPAGLSVKGEGDLLAAGLPDDDLLLVNGVGGIDELGNVEALVLNLVLALDLSDGDVLGDADLLGGRVGKAALDSEGSSDKGNLVGLGLVLLMADLVLTMVGVGSVAVGRGLDSTSGDLHGLRLLVIGDLGGLAVSDNIFPLVDIGADLPLDNSVGLLADGEDTVEAVVVVNNLLDRQGDRGHLLGKGGHADLSVNRCVGVPAQKLRSMVDGMGNGMVAGMVDSMMLSTGKCNQGRKNEAPHVDCLKV
Ga0103504_10000411	Ga0103504_100004111	F000021	GGTPKTGGNGIKQLRENIAESKLSYEIMDDAAQAFLKVKIMDNIHKYYYMIAFTAYMREMAEAARGGEGEKLPGGKSAIPGKELKLGKTFVVFMDAQPELRSLIEEGKGNLQWERDIPAAALANLESLANSDFKANLGKIIHDIYQTAHQMFSDMPQGDHKKRAKYRFASKTLMRILPSSVRGEIEGLIEKKAISLDLYEILGKCTWKPV
Ga0103504_10000528	Ga0103504_100005281	F000351	MLFTVLLGLAAAVDMHQKVTPVQKVIQLLQGMAEKGKKEKHEEQVQFAAYKQFCDDTTVEKQRAIKEATAKMEQLVAAIQKAEADAATLAKEIAQLDEDISVYEGDKKAATEVREMENADYLTTHKDYSESVDALERAIATMKKQDYDRTQLLQVNKLEIIPEHAKKVISAFLSQGDKMEEDLLAGSAPQANAYEFQSGGIVDMLEKLKDKFEDERTDLEK
Ga0103504_10000735	Ga0103504_100007351	F062378	MAASKPISWLYTKKTSLISLNNNFGTFNSCSGRFPLDIQPYRTMSP
Ga0103504_10000771	Ga0103504_100007711	F003503	QGSSSPIEVDLACTAGSPLGAKLASAFETCLGGEEALKPEEVGVSERRRRRPNKGRKCPTVEQIKAKMGEGMEGDWCVLSQLGWIDENGNEKNETTAADLMSLNAEVLAELDESAMATCAQERVEMIGKMMEKKHKRCAKKFSEEDKAELTEMALKIQGYNCFKEMFHSACQKSVKNQIYAFFQAQAMAAASTDSPTTTSAQG
Ga0103504_10000838	Ga0103504_100008381	F061505	GQKEVKDLDKAVAEATEQRKEEHGEFITFQTENNAALQLIEKAKNKLFKFYRPNQYKEAPKRELTEEEKILAASGRSDMIATAAPELIAGTTQTAMTQLYAQLDQFTAAAPPPPPATWDAYQKKDGKSNGVIALMDMLLKELQDGIVEAENEEKTSQKDYERLMSESQASRGP
Ga0103504_10000900	Ga0103504_100009001	F000075	MKFTLLAVVAASKYDQMNEDELLVSLESTLSSAQRSEARGDGDAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQPQINDMERRLGIMQSVEPVLENAIKTLQKVVDVRGMGKK
Ga0103504_10000961	Ga0103504_100009612	F022575	ATSNNNNKYRPIIRKIKFTGLNIGPXDPNKVNNKCPATILAAKRIDNVIGRIIFLTVSIITIIGIKKAGVPVGTKXAKRLLYXKIIESNILPNHKGSAKVNVKDMCLVLVKI
Ga0103504_10001436	Ga0103504_100014361	F000020	ATNEQTIKDAVEAQTAVAQALTVLKEFYEKAAEATALLQGKQKPEVFDDPYTGMQSENGGVVGMLEVIQSDFARLETDTKAAEAEAQKAFDEFTSESAVNRAANAKDVEHKTTKKTNQEAALTAKKADLEGTQKELDAALAYYDKLKPSCVDAGVSYEDRVARRKE