3300018619: Metatranscriptome of marine microbial communities from Baltic Sea - GS855_ls4

Overview

Basic Information

• IMG/M Taxon OID: 3300018619
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0129055 | Gp0214205 | Ga0188877
• Sample Name: Metatranscriptome of marine microbial communities from Baltic Sea - GS855_ls4
• Sequencing Status: Permanent Draft
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 57283556
• Sequencing Scaffolds: 20
• Novel Protein Genes: 25
• Associated Families: 24

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	6
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Pyrocystaceae → Alexandrium → Alexandrium monilatum	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Coccolithales → Coccolithaceae → Coccolithus → Coccolithus braarudii	1
All Organisms → cellular organisms → Eukaryota → Sar	1
All Organisms → cellular organisms → Eukaryota → Haptista → Centroplasthelida → Panacanthocystida → Acanthocystida → Marophrys → unclassified Marophrys → Marophrys sp. SRT127	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	2
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Monogononta → Pseudotrocha → Ploima → Brachionidae → Brachionus	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED203	1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Chrysophyceae → Chromulinales → Chromulinaceae → Ochromonas → unclassified Ochromonas → Ochromonas sp. CCMP1393	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Synurophyceae → Synurales → Neotessellaceae → Neotessella → Neotessella volvocina	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Metatranscriptome Of Marine Microbial Communities From Baltic Sea
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Metatranscriptome Of Marine Microbial Communities From Baltic Sea

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Baltic Sea
• Coordinates
  • Lat. (^o): 54.570232
  • Long. (^o): 11.332183
  • Alt. (m): N/A
  • Depth (m): .3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000075	Metagenome / Metatranscriptome	2622	Y
F000088	Metagenome / Metatranscriptome	2436	Y
F000191	Metagenome / Metatranscriptome	1666	Y
F000237	Metagenome / Metatranscriptome	1498	Y
F000826	Metagenome / Metatranscriptome	873	Y
F001145	Metagenome / Metatranscriptome	765	Y
F001219	Metagenome / Metatranscriptome	744	Y
F001904	Metagenome / Metatranscriptome	619	Y
F005505	Metagenome / Metatranscriptome	398	Y
F005667	Metatranscriptome	393	Y
F006869	Metagenome / Metatranscriptome	363	Y
F013303	Metagenome / Metatranscriptome	272	Y
F013838	Metagenome / Metatranscriptome	268	Y
F014742	Metagenome / Metatranscriptome	260	Y
F020701	Metagenome / Metatranscriptome	222	Y
F026894	Metagenome / Metatranscriptome	196	N
F028830	Metagenome / Metatranscriptome	190	Y
F034583	Metagenome / Metatranscriptome	174	N
F044306	Metagenome / Metatranscriptome	154	N
F061886	Metagenome / Metatranscriptome	131	Y
F082151	Metagenome / Metatranscriptome	113	Y
F084268	Metagenome / Metatranscriptome	112	Y
F093978	Metagenome / Metatranscriptome	106	N
F101210	Metagenome / Metatranscriptome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0188877_1004707	Not Available	1298
Ga0188877_1005567	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Pyrocystaceae → Alexandrium → Alexandrium monilatum	1177
Ga0188877_1006994	Not Available	1033
Ga0188877_1007297	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Coccolithales → Coccolithaceae → Coccolithus → Coccolithus braarudii	1008
Ga0188877_1009035	All Organisms → cellular organisms → Eukaryota → Sar	887
Ga0188877_1009834	Not Available	839
Ga0188877_1011719	All Organisms → cellular organisms → Eukaryota → Haptista → Centroplasthelida → Panacanthocystida → Acanthocystida → Marophrys → unclassified Marophrys → Marophrys sp. SRT127	752
Ga0188877_1012305	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	729
Ga0188877_1012974	Not Available	705
Ga0188877_1013040	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	703
Ga0188877_1013220	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Monogononta → Pseudotrocha → Ploima → Brachionidae → Brachionus	696
Ga0188877_1014040	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	670
Ga0188877_1015618	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED203	625
Ga0188877_1018303	Not Available	566
Ga0188877_1018869	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	555
Ga0188877_1019386	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Chrysophyceae → Chromulinales → Chromulinaceae → Ochromonas → unclassified Ochromonas → Ochromonas sp. CCMP1393	545
Ga0188877_1019461	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	544
Ga0188877_1019513	Not Available	543
Ga0188877_1020673	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Synurophyceae → Synurales → Neotessellaceae → Neotessella → Neotessella volvocina	524
Ga0188877_1021357	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata	513

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0188877_1004707	Ga0188877_10047071	F020701	SIIIMSAIESQNTSVEVPEQTAFNKSFRPIIGTCLAISALAAMALTSSPSGAANPGKPIASTTQLEVVKQGKQPIKDGCANIYGSDPDQVFIDPDTGLRVLTAVFTICDDRSLNGVALDSLGFDHQNDIDIGLTYVETGPGCWLTLYDGPNFNGKTAVISPETSMHLKHVGARNWNDLTRSITTRSSTGDGVALYLSHRVALGSVNDHCVAMYNANPEIFPKADGLYLCGDKNAAKTWNFDLADIIEQGFNIDGSHFGIKYIMSGRKVKLNIFDGPTRNTVSHGPLEMSGHETLDLETVKYGDDHWDSKAKSFTLVEV
Ga0188877_1005567	Ga0188877_10055671	F005667	MADMEPEVGTPPQRQRWATKGVVAGCIGLVVLFAVAQSPFARADKSRQLSEIVVTPPREECAKTTDNCMAQRCCKTTGYTCFLKEAGGDKATCMKECTPGVDGACIAQAVTAPATKSAYTLSSTNLFCFAVYTENTGCTKKSYDLELLRTNLFLGSHIFGCEAYKVYSDVTTWLSPGDVDTVMVTETAAAPFHGEKRKVTGTWINANMFIAVWKQIAVDNLYADKDWTVKADADAVFLPSRLRTKLMAQEVTSNGIYLENCKYVNFGFFGNLEVISHKAVQTYIANIDDCMSSLNYMGHEKLTGSEPWGEDLFAQRCMDLHGVDKVSDFTLTTDAACEAFRPEGEKKNKKWTPDCATTQTPAMHPFKNP
Ga0188877_1006994	Ga0188877_10069942	F006869	MADTVLLVSEQRMKQWTSLDNNIRIDVLTPSILNAQNVYSQQSLGTRFYNRLKEGVMNNDLTANENAFLKDYVGPALMQYALYLVLPNLKYKLVEKGIVSGTSEETAATTLDDMKYLRQNAMDLAQFYDERLREYLKDNPGMFPEYTNPGTDGMQPDRGEAYQNQLVTKIPLKRNERNLWIYEDCGTDCNPDCSNCY
Ga0188877_1007297	Ga0188877_10072971	F001904	MMKAVFLAVLAFLALSCVAVSAQTDFEIAALEVAGDCHPECRWQCDDPVCPAQCHPVCERPKCQIHCEETECAKCKIHCDKPQCNVRCPKDLCEKNDCPKCETVCAPANCRTQCEAPNAVCTPMCEATKCDWKCKKPVTCPKPKCELVCERPKCAAKKRAAGPSFIETASGDKAENPTCCPCSVQANVAAAMQQASKNGDVEEEMMPSFMEVVHSMKFKEAASAESQCCPCAA
Ga0188877_1008161	Ga0188877_10081611	F000237	ESDGXMLGGYAFFXFHYIIALGISLSATHLSDLTLTIIANIFXSLFNNIYKTYYIVFTNKHLNVDQLTRLMVLHYFTPXYYLYLVKLHILFCHESXDTDSGESTFEDKSGSYVSXFYDAFLKEIQDAXYXTIFVFIYFFMHHFSGATVNYFFFERXNISELDEIRFYGVAPHXYFRPLMGILVITPTHYEGLMXFGLXLILLAFLPIIYNFYNSFHKYVAAIPMQNSLLQTTFFMFFMMSLYCSASMLPCGRYYYEPEGGYVGNPXVKISYQFGYLYLGXFIHHLDVLDHYIFQFSQTFLRKCTLNMNYVNRSF
Ga0188877_1009035	Ga0188877_10090351	F001219	LRIKNIRXXXXAIIVTFKFINPVSKEIDDRAEFINYNLRKSTILLTFGYEKLSDCISLLTEEINELNRQTKLTRNYSNLKFENEVGSIQKENLKILSKLKGDLSIKSAFLFS
Ga0188877_1009834	Ga0188877_10098341	F101210	MAITVATLDWGNRTPDLFIDSMVKSAKVLDRFRLVDGVKSKVQVPIFDASLTFGNDLCVFTPASSASIGEKEMTVETYKWAFLNCKN
Ga0188877_1010061	Ga0188877_10100611	F044306	ETMKNLYQVTLLSLFMFLLSFSSMAQSTYEINAGEQITMSLEWLSSTTTTADFQVRLTNTGTLPVQFNSIIIRGTHAENLMTAGGTLSWVALNNNTNSSWNNWPNFTNALPYKVDKRMLNYSSNVKFFNSETAPLIPAGDGLVVGSFRLTVTGGTWSPNADFSFDFEPTAAVIGYVDGLKTVSTLKIHGNNIICLVSGPSQLGVSENSNPEFSVHPNPTNGKFNITLPSNVKANVSVVDAEGKVILEKNNLSNGALMNLGNVATGVYFLNISHGN
Ga0188877_1011719	Ga0188877_10117193	F034583	YKFYYYMPQLDPFVVCESSVSLLLFFWILIFLFVYILVPLIKLRFVIVSEKNSSHESGETSVPFYGNAFKFNDTFI
Ga0188877_1012305	Ga0188877_10123051	F014742	MCNPNMKNSKFMTLQPNMIPKGCYREIRKYQACAANSGKEACLNEKISIMEVCPDHVLEGLREKRKWFLRAEAIDNQTYKRAMSVSDYNKGRNVSDLEIKDWSFGHPKNMRSDSTWQD
Ga0188877_1012974	Ga0188877_10129741	F013838	HNEETMDAQFKDWVFDYFAKLSAQKALELAATALTTEMAADATVLDFDTNAAITSANILSLMQGAYQTMSAVMLSSVYGDANRQLKPAFFLGTAAVQAYQIAIAGLYTTTAQGVVEGNIPAYYGMEVIHFPSLVAGEFIISAPENIVMLTDDYNDVRAIDMKYESELSSDKIWGQFKLGFSYLKGDEIVYAKNFA
Ga0188877_1013040	Ga0188877_10130401	F000826	MKFLTLSAYALLIVSTEAAILKRHNVPGVTFLQTLPDVRADTVADADIAAHEAARAEAAKVKKNPQTALLASVKADLEEINNDMSFGVSYSQKSRNEHAVGLCQKVATAIIDYSKNLINNVNTSSADNKLTEQNAHNIASMIFFDVQLEDAMAALGMSPNEELILNVNRLKSLQKLYLFEQVGGENYLGXAQSGFVPKL
Ga0188877_1013220	Ga0188877_10132202	F061886	DYQNESLNRSKFRDHYNNEFVWVEKNHITDVGVKYDGLSRRVDHKPSHWRCEDEIERGKEFKRMNDECADKIADNRFSIDNSRDWLVNDGGVIDRVHRMSAKTAQTRYELDSIKRNMDNLKAMRTRLLKY
Ga0188877_1014040	Ga0188877_10140402	F013303	TAIKKSSDLGGSEVVTKSKSKWNGSFLGSVNEIFN
Ga0188877_1015474	Ga0188877_10154741	F000191	SGYTVGNLVNQHVRFIESGEKDPLMTYEKAFFTQSRPGEIPPID
Ga0188877_1015618	Ga0188877_10156182	F026894	RVQSPVAGVSRKKTGDSNRVKLTQDDLATARNFGIDINDEAALKRFAKEVKNFSTNT
Ga0188877_1016658	Ga0188877_10166581	F082151	PREQGCQLDNTLQISQIAVFDPFGTNMALNKPCDTSNPLISDKLVPYLPSGPHNVFPSISSCSRAVDGNLVNRDGNAIFQSTEPDSDTVTYDLGQNVLIKRIMYWNRKDCCQNMIAGATLEILNENGEVVNTEVFNNKLIQAFNFPASQSRATLFTDCNYGGEQVAMGPGSYKLAMMQIPKASLSSIKLPNDLEIKLFAG
Ga0188877_1018303	Ga0188877_10183031	F013838	LELAATALATELSADATVLDYDTNASLTSANILEKMEGAYQVMSADMLSAVYGDADRQLKPAFFMGTAAIQAYQIAIAGLYTTTAQGVVEGNIPAYYGMEVIHFSSLAAGEFIISAPENIVMLTDDYSDVRAIDMKYESELSSDKIWGQFKLGFSYLKGEEIVYAKNFA
Ga0188877_1018730	Ga0188877_10187301	F000075	MKFVAIAFVATASSNQYDFMGEDELLSQLSSTLVSAQRSEAMGDGDAAVAKTAAIKNIQKSLTARILKRLDDGQPLVEVARKMKAIEGMQPQINDMERRLGIMQSVEPVLENAIKTLQKVVDVRGMGKK
Ga0188877_1018869	Ga0188877_10188691	F000088	EAVTIKSSLAAKTEFAPPAKGPYASDTDHLSAECYGADEDDIMNDVFERYRVEERNPVGAGTGIWKLPKASGPQWASDIIRRFHVMDDDKVNAYVAANFDNFWKKYDNNGTGEIYETEGEVFLRALLGPNNRFRLAPGALSDMENDELWVPNDFSATPDHKTGPYVHRYNLDDGPFGNGYNKNG
Ga0188877_1019386	Ga0188877_10193861	F084268	MLFLLATPEYNNVQSNTTKVRVHLRSGIAEIFEQHQDLMGKVDNNIVEIETNFENKLEKIWFVLQDAVFIVSNQKGDSAASAFANEGTGVYIYAKRVKEINSSVSMEELSKQYDEKVSLFEAEKQKL
Ga0188877_1019461	Ga0188877_10194611	F028830	IDSFIYMKIKDGQIQSTVYLPQRDAVKHHSIQADKIFQVSEWPDTDKEMKIAFFEGSKVIEAIKHFEHDAIKGEFEFIENDEEFVASTLRIFNNELEITLSCSEPSLGFKDLSQEQRDAIFARSDSQFDFKLDTHSIGKVKNLFTLDKDETFGIKSDVAGINVNGKSFNVVLTPDTNGNG
Ga0188877_1019513	Ga0188877_10195131	F093978	LMKEAFNYLKSRYQEEIFNTSYSDHNQRQVLWMAYNMIEKIKGHLESVMTSGSLAQKELDQLQDLTK
Ga0188877_1020673	Ga0188877_10206731	F001145	VLDFSTFLMNNSEEAFIQLNPNILETNVQNIVILLGILLYANKVSFSVSLENRQKEIIQTIENAQKDVLNASNYYYLAEKGFTQSLFWLQSWKVLYEKDKTEFVTSKYNLVKKGLTETFETTESLIINFENKAFASLQRYMIFVTASRILRKFLFLSEKEQSKLIEVTITKLGG
Ga0188877_1021357	Ga0188877_10213571	F005505	GATVNYFFFERXNIAELDEIRFYGVAPHXYFRPLMGILVISPTHYEGLMXMGLFFILLAFLPIFYNFYNVYHEYVSTIPMQNSLLQTSFFIVFMMSLYCTASMLPCGRYYYEPEGGYVGNPXVKFSYQFIYLYLGXFVHHLDLFDHYLFQFSQTFIRKCSAYSSRTLNSR