3300018613: Metatranscriptome of marine microbial communities from Baltic Sea - GS846_ls3

Overview

Basic Information

• IMG/M Taxon OID: 3300018613
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0129055 | Gp0214200 | Ga0188872
• Sample Name: Metatranscriptome of marine microbial communities from Baltic Sea - GS846_ls3
• Sequencing Status: Permanent Draft
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 45776576
• Sequencing Scaffolds: 14
• Novel Protein Genes: 16
• Associated Families: 15

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	1
All Organisms → cellular organisms → Eukaryota → Eukaryota incertae sedis → Picozoa → unclassified Picozoa → Picobiliphyte sp. MS584-11	1
Not Available	3
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Chrysophyceae → Chromulinales → Chromulinaceae → Ochromonas → unclassified Ochromonas → Ochromonas sp. CCMP1393	2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea	1
All Organisms → cellular organisms → Eukaryota → Haptista	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	1
All Organisms → cellular organisms → Eukaryota → Sar	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Metatranscriptome Of Marine Microbial Communities From Baltic Sea
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Metatranscriptome Of Marine Microbial Communities From Baltic Sea

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Baltic Sea
• Coordinates
  • Lat. (^o): 54.570232
  • Long. (^o): 11.332183
  • Alt. (m): N/A
  • Depth (m): .3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001145	Metagenome / Metatranscriptome	765	Y
F001219	Metagenome / Metatranscriptome	744	Y
F003424	Metagenome / Metatranscriptome	487	Y
F019482	Metagenome / Metatranscriptome	229	Y
F027881	Metagenome / Metatranscriptome	193	Y
F027998	Metagenome / Metatranscriptome	193	Y
F028188	Metagenome / Metatranscriptome	192	N
F039667	Metagenome / Metatranscriptome	163	Y
F044306	Metagenome / Metatranscriptome	154	N
F054537	Metatranscriptome	139	Y
F060049	Metagenome / Metatranscriptome	133	Y
F062806	Metagenome / Metatranscriptome	130	N
F067545	Metagenome / Metatranscriptome	125	Y
F084268	Metagenome / Metatranscriptome	112	Y
F092118	Metagenome / Metatranscriptome	107	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0188872_1000233	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	4378
Ga0188872_1001841	All Organisms → cellular organisms → Eukaryota → Eukaryota incertae sedis → Picozoa → unclassified Picozoa → Picobiliphyte sp. MS584-11	1538
Ga0188872_1003839	Not Available	1026
Ga0188872_1004285	Not Available	971
Ga0188872_1006354	All Organisms → cellular organisms → Bacteria	776
Ga0188872_1006835	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Chrysophyceae → Chromulinales → Chromulinaceae → Ochromonas → unclassified Ochromonas → Ochromonas sp. CCMP1393	744
Ga0188872_1009480	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	620
Ga0188872_1011125	Not Available	566
Ga0188872_1011673	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea	551
Ga0188872_1012030	All Organisms → cellular organisms → Eukaryota → Haptista	542
Ga0188872_1012229	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	537
Ga0188872_1013161	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Chrysophyceae → Chromulinales → Chromulinaceae → Ochromonas → unclassified Ochromonas → Ochromonas sp. CCMP1393	516
Ga0188872_1013552	All Organisms → cellular organisms → Eukaryota → Sar	508
Ga0188872_1013707	All Organisms → cellular organisms → Eukaryota → Sar	506

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0188872_1000233	Ga0188872_10002335	F001219	MNFPITFFINASGLFDFDFTFPTEALLFLILAGVTTTVFISPVSQQMDERAEFINYTLRKSTILLTFGYEKLTTCVGLLTAEIDEMNRQIKLVKNYTNSKFEEEIEVVQKENMTILSQLKGDLSVKSAYLFSNVTNDLISLTDKFFSKKFQSAS
Ga0188872_1000233	Ga0188872_10002336	F001145	MNWNLFSFFLNSEGSFIEFNTNILETNIINIFLLFGLLFYANKVSFSGTLEERQKEIIQTIENAQKDVLNASNYYYLAEKGFTQSLFWLHSWKTLYAKDKVEIVNSKYKTVKTGLTETFSTTENLITNFENKAFVALQRYIIFITASKILRKFFFLSEKEQSKLIEVTISNLGGS
Ga0188872_1001841	Ga0188872_10018411	F028188	NLHSVLLNDSFALDFICATPLEQFQILPLSAQVYPASASISSLEQCNLFPQVSTDSEFVYISGAGLAAKLTS
Ga0188872_1003839	Ga0188872_10038391	F027881	LARSERVRGVLTHASRTEIKLNLSGARVSNTLRTFRRFM
Ga0188872_1004285	Ga0188872_10042852	F067545	MSNGPSDDHEDEHFGSALLKNLAATAFLGLFSWHLLTLHNIAKSVEVLIEKVSAGNTRIERLENEVFFKEYPNGTSQSRNP
Ga0188872_1005682	Ga0188872_10056821	F044306	ETMKNLYQVTLLSLFMFLLSFSSMAQSTYEIKAGEQITMSLEWLSSTTTTADFQVRLTNTGTLPVQFNSIIVRGTHAENLMTAGGTLSWVALNNNTNSSWNNWPNFTNALPYKVDKRMLNYSSNVKFFNSETAPLIPAGDGLVVGSFRLTVTGGTWSPNADFSFDFEPTAAVIGYVDGLKTVSTLKIHGNNIICLVSGPSQLGVSENSKPEFSVHPNPTNGKFNITLPSNVKANVSVVDAEGKVILEKNNLSNGALMNLGNVATGVYFLNISHES
Ga0188872_1006354	Ga0188872_10063543	F027998	PVFFFYDRTILSDELTNTSAAEIGITTIRTAKMMLLKNAPKEGVIIEISYFA
Ga0188872_1006835	Ga0188872_10068352	F084268	MQFLLATPEYNNVQSNTTKVRVHLRSGVAEILEQHQDLMGKVDNNIVEVETNFENKIEKLWFVLQDAVFIVSNEQKEEAGETGVYIYAKRVQEISKDLTLETITKQYEE
Ga0188872_1009480	Ga0188872_10094802	F039667	GVNMDTMVRELNLKFKLAIQQKGGVGLRSLKLIFKRMDFNGNNTLDIGEFE
Ga0188872_1011125	Ga0188872_10111251	F003424	KAIEMEMFSITGGIAANQSVFGASAKQDEYNAVGTTIDASNKQSGVFTEGFGSQFVELGIGRWISLGFEHVPDSISTPQNINDSNTTATPTSKVSVDFNDMNTTYLKLNTPMGIYFKYGTVSTDLDIKETQASGNTYKNTSVDGTSMGAGYQKTFGERGFGFRIEGNYVELDNVTVNNGVTKVGVVGR
Ga0188872_1011673	Ga0188872_10116731	F062806	QXQYWWXFXFAFLXVLYYLLVARVFRYRTLKFNPRIASTLRPHGKXGDLLTCIIPVTWCLNILLNSNFILKLIEWQSESSLFTLRVRAKQXYXIYKLDLRNIADIFSAPRNVGRNKXQFATFGDLQTAEDYLHIMQMRAFNAXSKEFXTELGKKFSRKNSFNLSSSVDVYKTEFLLNSKYTIY
Ga0188872_1012030	Ga0188872_10120301	F054537	SHNLSPQMSVVASLVAAAAVAFSGPATFVPQTQVQRASTIDMNTKYTVAAGVAKKKKAGTGTATSLKGYKVGMRAPDIAKSSGTTQGEQSLWDKVFGGKK
Ga0188872_1012229	Ga0188872_10122291	F019482	VCSLLAHSSDINDLLEGLDGVLEDWLDGLHDTESSLHIVDLWLHALDGLHLSGDLNEWLSIIESLEDSSGEGFLDVLDGSGLGNGGISISSGLGSLSGDEGAGELGEELILVEGVVLVGRGGSNKGNSGE
Ga0188872_1013161	Ga0188872_10131611	F060049	MLFLLATPEYNNVQSNTTKVRVHLRSGIAEIFEQHQDLMGKVDNNIVEIETNFENKLEKIWFVLQDAVFIVSNQKGDSAASAFANEGTGVYIYAKRVKEINSSVSMEELSKQYDEKVSLFEAEKQKLVDENIDVSDETSNSKLMV
Ga0188872_1013552	Ga0188872_10135521	F001219	CSGLFDFDLTFPSEALLFLILATVITNVFLSPISNQLDERAEFINYTLRKSTILLTFGYEKLTTCVGLLTEEIDEMNRQVKLVRNYTNSKFEEELTVIQNENLNILSQLKGDLAIKSAYLFSNVTNDLTALTDKFFENKFQSV
Ga0188872_1013707	Ga0188872_10137071	F092118	MDWNTLSFFINEEPLVQLNPNILETNVQNIVILLGILLYANNVSFSVSLEDRQKDIIQTIENAQKDVVNASNYYYLAEKGFTQSLFWLQSWKILYEKDKVDLVNSKYQIVKTGLEQTFITTEN