3300018553: Metatranscriptome of marine microbial communities from Baltic Sea - GS677_0p8

Overview

Basic Information

• IMG/M Taxon OID: 3300018553
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0129055 | Gp0214168 | Ga0188840
• Sample Name: Metatranscriptome of marine microbial communities from Baltic Sea - GS677_0p8
• Sequencing Status: Permanent Draft
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 7063253
• Sequencing Scaffolds: 2
• Novel Protein Genes: 2
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Metatranscriptome Of Marine Microbial Communities From Baltic Sea
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Metatranscriptome Of Marine Microbial Communities From Baltic Sea

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Baltic Sea
• Coordinates
  • Lat. (^o): 58.581234
  • Long. (^o): 18.232801
  • Alt. (m): N/A
  • Depth (m): 9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034583	Metagenome / Metatranscriptome	174	N
F088946	Metagenome / Metatranscriptome	109	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0188840_100276	Not Available	1587
Ga0188840_101102	All Organisms → cellular organisms → Bacteria	799

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0188840_100276	Ga0188840_1002761	F088946	KESFYPKFFIKKFLQWPLKKGNKNLPVKKLLEFNHKLVYTPQSCRRLDLLFVILIYTSLFKFRSTNLTFIKRRLSKTTKKKVYENVPYNHLEKNSIKLFSSMFNKEIAKKGSIFFFLVQKYLKKKLIKNYRKKCYLSLMSVPLTKK
Ga0188840_101102	Ga0188840_1011023	F034583	MPQLDPFVVCESSVSLLLFFWTLIFLFVYILVPLVKLRFVIVSEKNALHQVEETCKPFYGNTFKFNDTFF