3300018548: Metatranscriptome of marine microbial communities from Baltic Sea - GS695_3p0

Overview

Basic Information

• IMG/M Taxon OID: 3300018548
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0129055 | Gp0214197 | Ga0188869
• Sample Name: Metatranscriptome of marine microbial communities from Baltic Sea - GS695_3p0
• Sequencing Status: Permanent Draft
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 4643463
• Sequencing Scaffolds: 5
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	1
Not Available	4

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Metatranscriptome Of Marine Microbial Communities From Baltic Sea
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Metatranscriptome Of Marine Microbial Communities From Baltic Sea

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Baltic Sea
• Coordinates
  • Lat. (^o): 54.570232
  • Long. (^o): 11.332183
  • Alt. (m): N/A
  • Depth (m): 19

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000256	Metagenome / Metatranscriptome	1448	Y
F008810	Metagenome / Metatranscriptome	327	Y
F020385	Metagenome / Metatranscriptome	224	Y
F046471	Metagenome / Metatranscriptome	151	N
F063160	Metagenome / Metatranscriptome	130	Y
F078928	Metagenome / Metatranscriptome	116	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0188869_100270	All Organisms → Viruses → Predicted Viral	1026
Ga0188869_100739	Not Available	666
Ga0188869_100798	Not Available	640
Ga0188869_100835	Not Available	628
Ga0188869_101023	Not Available	571

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0188869_100270	Ga0188869_1002701	F078928	TIGRHRGAKRMIREAQKGKDEQMEDVYWDRLDVANRLADEYKDKIQQIFSDTFGT
Ga0188869_100739	Ga0188869_1007391	F063160	MREYIAILCDELGDDFRVVIEIPDLVENVTEYVREEYPESSIVYIMPKGF
Ga0188869_100739	Ga0188869_1007392	F020385	MRKPSFKEILAERQEYLDALKSKGDLYALGFLESSFLYHMGDNGLEPLNPAQKETLAKWKATTQ
Ga0188869_100798	Ga0188869_1007981	F046471	MMMTEECQECQGEGVCEYERWERYGDTYEPYAEYSVCEWCLGTGQVESDE
Ga0188869_100835	Ga0188869_1008352	F000256	MADGVSGIGSAPFNVGSDIHQQTQTRERIETHLVEQRVAKQHRANHAHLDALREQKLDLGKGYDRFGTSMSPYSESYYN
Ga0188869_101023	Ga0188869_1010232	F008810	MADGVSGIGSAPFNVQSDIHQQSQSRERIEAHLVEQRVAKEYRANHTHLEALREQKLDLG