3300018510: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_122 - TARA_N000001941 (ERX1782292-ERR1712069)

Overview

Basic Information

• IMG/M Taxon OID: 3300018510
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117946 | Gp0217092 | Ga0193370
• Sample Name: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_122 - TARA_N000001941 (ERX1782292-ERR1712069)
• Sequencing Status: Permanent Draft
• Sequencing Center: Canada's Michael Smith Genome Sciences Centre
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 3710141
• Sequencing Scaffolds: 13
• Novel Protein Genes: 13
• Associated Families: 13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	8
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda	3
All Organisms → cellular organisms → Eukaryota → Opisthokonta	1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: South Pacific Ocean: TARA_122
• Coordinates
  • Lat. (^o): -9.006
  • Long. (^o): -139.206
  • Alt. (m): N/A
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000276	Metatranscriptome	1390	Y
F000481	Metagenome / Metatranscriptome	1089	Y
F007564	Metatranscriptome	348	N
F008557	Metagenome / Metatranscriptome	331	Y
F012568	Metatranscriptome	279	Y
F022575	Metatranscriptome	213	Y
F033816	Metatranscriptome	176	N
F071634	Metagenome / Metatranscriptome	122	Y
F073585	Metatranscriptome	120	N
F076493	Metagenome / Metatranscriptome	118	Y
F076846	Metatranscriptome	117	N
F086821	Metagenome / Metatranscriptome	110	Y
F088204	Metatranscriptome	109	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0193370_100113	Not Available	1261
Ga0193370_100125	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda	1224
Ga0193370_100175	Not Available	1062
Ga0193370_100373	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda	786
Ga0193370_100393	Not Available	770
Ga0193370_100401	All Organisms → cellular organisms → Eukaryota → Opisthokonta	764
Ga0193370_100472	Not Available	723
Ga0193370_100487	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana	718
Ga0193370_100634	Not Available	655
Ga0193370_100871	Not Available	577
Ga0193370_100884	Not Available	572
Ga0193370_101128	Not Available	519
Ga0193370_101194	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda	505

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0193370_100113	Ga0193370_1001131	F076846	MGVKQQSVRPALRMKKSLSLLISLQLLVLSSAAQNEECPVGTSKFSGQSDVCVSLLDFCLGQGRVVRNDWCGERCVPPKIPDPNGEACRDDSEILRPVLMMTELKEMMETQLIDLRERLSSRGLSGAIRDIEQIPSLAGLTNSRDQGITSELMTDALAKLYTVQDSDILLTTNFRFLKDQVKKRVGNIEEALHDTQSGKNRIRSALRNIRRLYRDFLSKIKDINDDIKVKQDTVTAALTKVAVFNEMLAGVKQNRRNLNKVQLTKDLFSKIKTTFVEVDNEWKKKGTQQAVDKTLDSLPGLINIGVSLFSSSTAHNEREIKDRIERSLKAVGAVTSRLSSANWELIQFSGSFLSALTRNNELKKQEFQGISADLIADALSRCREMVELAERL
Ga0193370_100125	Ga0193370_1001251	F033816	LEEGEGRFLYFNSSSTATSLTLLGALILLGVIFYLVYVGGLLAPAAGSYSNYQRYGQDYGQYYGQARSSDMGYDFNAVNILQWISMLQEVYEKFDYNDVDCQKLLICEVLRDEESFGDVSRRLQGGFELAKYLEVLNMPDEFRELLDEYMDASERSLGQKECAEFFQCPYSLKESVKRNFSGNSL
Ga0193370_100175	Ga0193370_1001751	F071634	MATKAELTTGSASAATEHTEEPQLAELVTQEAGLSTEIELKVVRNDLVHYTYLYKGNQVSTQKVQIVLQSKQAEQYCLGVARLQKKDETEFKKVRDRWQIGTTWRFKAITLLNEKPAYIHTSCRIAIDLRKSQAQALLQSTSFPQTPVPTVTIADVMQLTQMQRFDLMAIVAKVLDERKGGAGMNIADVRLVDGSKDNDSNTTEYASLPLTLFFKDAAEFASFKQYVGKTPLLFMCLTGSSKDGKVSVATLKDQSWMQEAVGPKAVVMAEEAARMCGDDAALRDVAALQTFTAAAA
Ga0193370_100373	Ga0193370_1003731	F000481	ILEILMAERAKDQRNTEMGKLDTLIKKHEELIPNVQKTAVMVDLYWKCYAYGDELKPHVEFLDGIMLSSTRDIAPSCLENVDELIERQEKSLSQLDSKRNIVTDLIAKGKVILQNPDKPKFLEANVKRIQDGWEDTKQKAQDRLQLLNETKSAFIGYAENSETIANEFDSAEEEIKKVKKIFNLDAANADLKKRQDLLKRSDETIHGLFDSINNNYKTMCITIPEDKKKILAKEIKAVEEKLEVVGRFKATVSKIEELVAA
Ga0193370_100393	Ga0193370_1003931	F000276	MKTAVITLALVAAAAAKFCPGEKNKNRCVAGDTAYKCAVFFGNLTESRPLTWIGALPDALSKASSPEEAKAILGADVTEESFEDLPNCDDVTANARCYAILDGQKDIKLDSCDRNLINTRGPQTIGNFLCGQVRRWLRRSASFKTSGIRDLRLPFYYSACNRDWTPITDGENDLYFDEALCCNPDGSYYNCDGSETNDQC
Ga0193370_100401	Ga0193370_1004011	F022575	FFYFKIFLLKLILINSFKYNELKIVKTYDXIQATATSNINSKINLIIKIIIIIIDTLGPXEPNNVNSKXPATILAANRIDKVIGRIIFLTVSIITIIGIRNEGVPKGTRXANNLLYXKIIENNIVPNQIGKARTNVIDKCLVLVKI
Ga0193370_100472	Ga0193370_1004721	F007564	YPSYGYPMVQSPMVSAYPLAGYPSVGQRIAPYPMAGTRNLITLGNFLQLNGVFEQVATATTTVPATTVKGNFNIQQNGILDVFSGNEAKFTMYLMSSTDLTGKNVKIMFATGASCVAAIAATTTHKELAMVNVPPSINGFYISGTTKGFNIDGMNSKTALMGASNWLVLTESGSVIGCSKTALQ
Ga0193370_100487	Ga0193370_1004872	F086821	THHTVLGTTPGAAVFGRDMLFDIPYLADWHKIGRRRQKLVDRDSKRENSKRREHDYTVGDKCTLRKDGILRKAEDKNIGPWTITQVHCNGTVRIQRGTVSERLNIRRIDPYFE
Ga0193370_100634	Ga0193370_1006341	F073585	ALPKSRSEAEKFFLKNNFKISATGSKRNFDIDLSWKATKPDWDFSTPESLKIDINAKGESPRWGNWMLSRDASFKVENKVIQADVSGKAHFKGGLLATSTPIVTEVHMKYLIPQRDLQGKFSKMINGKEYSINFPDGFGVMPQIKMGQ
Ga0193370_100871	Ga0193370_1008712	F088204	FETYYYNGGKCWRWDTEACKKQWKYGPWGEDLFMQKTMDDAEVLKKEDFTLTDTGTCPGMRPKADKKNMSYVPSCRDSGVYKFVAVHPMRNLAAWKDCYSAISR
Ga0193370_100884	Ga0193370_1008841	F076493	RVQRRQLPMTIKTASTIHTLQGVTTDPGLIFHWKFPRFFSEELRWLATYVALSRPPSLAQLISVGLPDELRKIIEAGPPEGILSRFNDMFEEKEKATHIRAAEVMRELGWDATD
Ga0193370_101128	Ga0193370_1011281	F012568	AQYTTDVWNKIDLSQTMAGEDPEWRNMLTTHYKDCYDIARSFPQSALNRNPLTKVFGRHMVFFKCAKKVEHKCCAMACANDMLETLYGTNDNYDWTQHNMPQNKYKRAALTLKIMYGTASDEEMAINDFFFGMDM
Ga0193370_101194	Ga0193370_1011941	F008557	AFTDKVTPITLAVKEVVDNDYCFDRVLTVCEETSTIVEREICTYVYEQETVTPPCTTTQVTYEDKSETMKVTTCGAAGYGYGHHGYAPAGEHQVCHEEYQTQAYKVPLVTAPLEVTCSLAYPAPKKVCVTYSIDIDEVKCEDKIENRCFNVAKFVDATNVVDQVETVI