3300017653: Enriched backyard soil microbial communities from Emeryville, California, USA - eDNA 3rd pass 37_C BE-Lig BY (version 2)

Overview

Basic Information

• IMG/M Taxon OID: 3300017653
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127392 | Gp0191725 | Ga0180215
• Sample Name: Enriched backyard soil microbial communities from Emeryville, California, USA - eDNA 3rd pass 37_C BE-Lig BY (version 2)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 765389497
• Sequencing Scaffolds: 14
• Novel Protein Genes: 14
• Associated Families: 13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria	2
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1
Not Available	5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Lignin-Adapted Enriched Soil Microbial Communities From Emeryville, California, Usa
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Lignin-Adapted Enriched Soil Microbial Communities From Emeryville, California, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: USA: Emeryville, California
• Coordinates
  • Lat. (^o): 37.83
  • Long. (^o): -122.29
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001784	Metagenome / Metatranscriptome	635	Y
F006745	Metagenome	365	Y
F007999	Metagenome	341	Y
F010587	Metagenome / Metatranscriptome	302	Y
F012845	Metagenome / Metatranscriptome	276	Y
F026032	Metagenome / Metatranscriptome	199	Y
F037930	Metagenome / Metatranscriptome	167	Y
F047414	Metagenome / Metatranscriptome	149	Y
F052044	Metagenome / Metatranscriptome	143	N
F054879	Metagenome / Metatranscriptome	139	Y
F061999	Metagenome / Metatranscriptome	131	Y
F072063	Metagenome / Metatranscriptome	121	N
F098955	Metagenome / Metatranscriptome	103	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0180215_1025689	All Organisms → cellular organisms → Bacteria → Proteobacteria	3694
Ga0180215_1028668	All Organisms → cellular organisms → Bacteria	3404
Ga0180215_1054182	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2125
Ga0180215_1084097	All Organisms → cellular organisms → Bacteria → Proteobacteria	1526
Ga0180215_1086137	Not Available	1498
Ga0180215_1098656	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1353
Ga0180215_1120964	Not Available	1162
Ga0180215_1162053	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	936
Ga0180215_1187613	All Organisms → cellular organisms → Bacteria	842
Ga0180215_1248991	Not Available	684
Ga0180215_1253060	Not Available	675
Ga0180215_1272982	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	639
Ga0180215_1275174	Not Available	635
Ga0180215_1303996	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	591

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0180215_1025689	Ga0180215_10256895	F010587	MSKLFSRAPTFEHIQAFLDDTRGQITIGEIPPIRRAALAAVGKKARVALVCRDQESVLDLLKRLDVSLGQAMADDTVIDEVLPEIKRQRVR
Ga0180215_1028668	Ga0180215_10286683	F026032	MIEFPMPDQSTPRVAVAFAMFCQGYDPAHPTDLRQMTTGIGGWTADAPPTVELTLAIGLWNTASAGRVACRIGVCRPDDDVVYIGEGDTQIEAAGEMALMPLKFTLTLDRPGLYWAIGEFDGQVLVEVPFSVSEAPPPAAAGAPA
Ga0180215_1054182	Ga0180215_10541823	F052044	MADADRLGKIATIGQDLITTQLTMAMQTPSQALEGTWVLGYCFGIFDALAQQADLDDGAEGFSLVTLGFLGLFPDPADPEAAAFIRRSLDRQDNPRFQEGAAAGGTDVFVWVADRTKAPNALFEHLSR
Ga0180215_1084097	Ga0180215_10840972	F001784	MGTELAANLPSNLNEAIMGEVIHASFGTEREWEQTHEKTVDGLLTIGNLFGDDEALMRAKAECVYHILREIVEDIPSVQITTRMPDNLTDEQMTMLTESIRQAALKGIEVAMTHSVQVLMSSIYDLCTSKLKVRPC
Ga0180215_1086137	Ga0180215_10861371	F012845	FIAFCYEKGIGTRKNLAKAAQLYKKDIDQMPRVLYSRYRKVLVVKEKRAHGLQLSQEEENINVDEQAEDLKLKIEERLEDTTRMDCYLFYVYGKIYEKIDEDNDRAIEWYQKGVDVDTDSCLKNHLLCNEAWRLKCKKRLLKLQARKGLQVSIVNKNRED
Ga0180215_1098656	Ga0180215_10986563	F061999	GILRSLEPKKVDPQMLHRNAPRLGEMLGEDDWFDKMHGIGRDHARFGHMQRLHAFTNQQKAKLLAEAAAPIG
Ga0180215_1120964	Ga0180215_11209642	F047414	MHRDSLILSPLFSTNNHNGGFFGNFTPRYFSNVPHMPDNNKGFGPDDFLRPSPTHMDIDVNSRFDKAVDNLKMELRNNPAPLMNDHHGMDQQGLNLDIDLIDDSYLHAPLTKSPHIQFPGSQPNSKCSFKKFGEWTLSPNASFLPRKKF
Ga0180215_1162053	Ga0180215_11620532	F037930	MTPATTGRPAKPRLSREARQIERQYRNVITLFLAGRLGNFSHQRHVHIANILHHLPYGRELMHLGLQVMAYRNFVPDKYSADITDRYWDQLDGTLPDPSVFDDVPGGADGRRQERGAHVSGLTD
Ga0180215_1187613	Ga0180215_11876132	F098955	MDSAIPVFLAGPFPVIHTARVLEFEQEVELDVALLINGLPNMLASTAFPLDDSWERIQAALDSGDARLAVAGMPYETTSASGRAETFPSAYVGMECANGERLVLAHIKGVDAEQQAEAYAREVINAILDGNSPVDLGETIED
Ga0180215_1248991	Ga0180215_12489912	F054879	MSLDLSPSDTRVFLFHSPGAARDASGAMDSVNTWLGKDRSGSPYANLRVREVSVQPDGDGGVYTM
Ga0180215_1253060	Ga0180215_12530601	F072063	MLDDIVELLRARYGAEWGKDTDANIRFAIEAERLVSDTADAHLIGEPELDDHHLTLQFWVDRPVKDLMTADQVAFEIFARISTEIFYSERKFVEGAVVYSFVTGTSRHGHCGSVVLAGPHAAEFSERFRQRTLGGPRFHA
Ga0180215_1272982	Ga0180215_12729821	F037930	LSRPQVPTGVSANGKPKRTIASLRVEREYRNVIDRFLAGTMPNFTHERHVDVANILHHLPYGRELMHLGLQTMAHRHGIPEKYRADITDMWWDRLDGTLPDPARFADLPGGADGSGSIEPAQAVVTTATRSVVGP
Ga0180215_1275174	Ga0180215_12751742	F006745	VNRRLAERAPEQRTVASHRHGRTSSAVLVYVIVLVALQLFLVTVAAEAFLSDDEGLAWATATISVVMFGAAALFLRYLRP
Ga0180215_1303996	Ga0180215_13039962	F007999	VDRMRIDTAAARGDQARKNLVAALRECGELADAVEHFEGDELLEVLAHIDGLRFVMAESSQLLQGVVRGFER