3300017302: Metatranscriptome of marine eukaryotic communities from Pacific Ocean in 21 psu salinity and 373 ?mol photons light - Thalassiosira punctigera Tpunct2005C2 (MMETSP1067)

Overview

Basic Information

• IMG/M Taxon OID: 3300017302
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128947 | Gp0212048 | Ga0186336
• Sample Name: Metatranscriptome of marine eukaryotic communities from Pacific Ocean in 21 psu salinity and 373 ?mol photons light - Thalassiosira punctigera Tpunct2005C2 (MMETSP1067)
• Sequencing Status: Permanent Draft
• Sequencing Center: National Center for Genome Resources
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 41382367
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema → Skeletonema marinoi-dohrnii complex → Skeletonema marinoi	3
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Pacific Ocean
• Coordinates
  • Lat. (^o): 47.6901
  • Long. (^o): -122.40041
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051162	Metagenome / Metatranscriptome	144	Y
F067805	Metagenome / Metatranscriptome	125	Y
F099352	Metatranscriptome	103	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0186336_116428	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema → Skeletonema marinoi-dohrnii complex → Skeletonema marinoi	895
Ga0186336_118081	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	801
Ga0186336_121219	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema → Skeletonema marinoi-dohrnii complex → Skeletonema marinoi	643
Ga0186336_121565	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema → Skeletonema marinoi-dohrnii complex → Skeletonema marinoi	628

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0186336_116428	Ga0186336_1164281	F099352	VFSGGEAFKGAGAPSLKSEVSVTSNSNRVILDSQELNAASGPFNLCCAQAYSRFTELKRVKLHPGNMTKERDDVESCSANVYKGVQSSCLDQFEAVKACLSDNPDEWAKCASARRELEVCSVRNNLGELKKA
Ga0186336_118081	Ga0186336_1180811	F051162	MNKAIPLQSLQSQLCKIWSTKPETTKLILSRVEDWTSDSYDEDCYIDIRAYGKPERTREFVLDGMTQIQQAFAEHDLIANVRLETYDGERFFHVPPKEK
Ga0186336_121219	Ga0186336_1212191	F067805	MGRKQKKEEELTLSKKDQKKVDKLTAQLPYHEGRGNMEEVTKIKGQIESIWEKAREAQYA
Ga0186336_121565	Ga0186336_1215652	F067805	MGRKQKKEEELTLSKKDQKKVDKLTAQLPYHEGRGNMEEVTKINGQIESIWEKAREAQYA