3300017292: Metatranscriptome of marine eukaryotic communities from Pacific Ocean in f/2 medium, 13 C, 21 psu salinity and 616 ?mol photons light - Odontella aurita 1302-5 (MMETSP0015_2)

Overview

Basic Information

• IMG/M Taxon OID: 3300017292
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128947 | Gp0212014 | Ga0186302
• Sample Name: Metatranscriptome of marine eukaryotic communities from Pacific Ocean in f/2 medium, 13 C, 21 psu salinity and 616 ?mol photons light - Odontella aurita 1302-5 (MMETSP0015_2)
• Sequencing Status: Permanent Draft
• Sequencing Center: National Center for Genome Resources
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 45438440
• Sequencing Scaffolds: 2
• Novel Protein Genes: 2
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102	1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Pacific Ocean
• Coordinates
  • Lat. (^o): 44.65
  • Long. (^o): -124.53
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051162	Metagenome / Metatranscriptome	144	Y
F068121	Metagenome / Metatranscriptome	125	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0186302_120872	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102	787
Ga0186302_125259	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	556

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0186302_120872	Ga0186302_1208721	F068121	TTTHLLHLSHTLSPAYLSVIHITMGGCRPRTDEEIEKETGVCREKHENRNASNELPDGVLNPSPDDPTVWTDKLGREWKLNAEPNAAYHQPMSVPVAWIRAHLGTFIPALKVPNLKFISPNADGRYSEVCANRYTGELVIKQDILGTFNFCKDAPDAMIDGKLPTTGEHHLLDVVPHEEYGSEYKHIAKDIPMGSLEKGPVILGTLEKM
Ga0186302_125259	Ga0186302_1252592	F051162	MPLVKIFALRSLTKPIPLSSLQSKMCGIWGTKPATTKILLSRIDDWTGDTFDEDCYVDIRAYGKPERTREVVLEGIKRVQEAFKEEGLIANVRLETYEGERYFHVPPLAPEEGS