Sample 3300017273

Overview

Basic Information
IMG/M Taxon OID	3300017273 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0128947 \| Gp0212177 \| Ga0186465
Sample Name	Metatranscriptome of marine eukaryotic communities from English Channel grown at 18 C, 40 psu salinity and 447 ?mol photons light - Elphidium margaritaceum (MMETSP1385)
Sequencing Status	Permanent Draft
Sequencing Center	National Center for Genome Resources
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	40222744
Sequencing Scaffolds	11
Novel Protein Genes	11
Associated Families	11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	6
All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Retaria → Foraminifera → Rotaliida → Elphidiidae → Elphidium → Elphidium margaritaceum	1
All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Retaria → Foraminifera	1
All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Retaria → Foraminifera → Monothalamids → Reticulomyxidae → Reticulomyxa → Reticulomyxa filosa	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	English Channel
Coordinates	Lat. (^o)	N/A	Long. (^o)	N/A	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F010522	Metatranscriptome	302	N
F015563	Metagenome / Metatranscriptome	253	Y
F015960	Metatranscriptome	250	N
F054572	Metatranscriptome	139	N
F057102	Metatranscriptome	136	N
F058691	Metatranscriptome	134	Y
F059642	Metatranscriptome	133	N
F070865	Metatranscriptome	122	Y
F075672	Metatranscriptome	118	N
F086594	Metatranscriptome	110	N
F091322	Metagenome / Metatranscriptome	107	N

Family

Category

Number of Sequences

3D Structure?

F010522

Metatranscriptome

302

F015563

Metagenome / Metatranscriptome

253

F015960

Metatranscriptome

250

F054572

Metatranscriptome

139

F057102

Metatranscriptome

136

F058691

Metatranscriptome

134

F059642

Metatranscriptome

133

F070865

Metatranscriptome

122

F075672

Metatranscriptome

118

F086594

Metatranscriptome

110

F091322

Metagenome / Metatranscriptome

107

Scaffold	Taxonomy	Length	IMG/M Link
Ga0186465_113095	Not Available	1083	Open in IMG/M
Ga0186465_114018	All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Retaria → Foraminifera → Rotaliida → Elphidiidae → Elphidium → Elphidium margaritaceum	1017	Open in IMG/M
Ga0186465_115435	All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Retaria → Foraminifera	924	Open in IMG/M
Ga0186465_115905	All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Retaria → Foraminifera → Monothalamids → Reticulomyxidae → Reticulomyxa → Reticulomyxa filosa	894	Open in IMG/M
Ga0186465_116276	All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Retaria → Foraminifera → Monothalamids → Reticulomyxidae → Reticulomyxa → Reticulomyxa filosa	871	Open in IMG/M
Ga0186465_116490	Not Available	860	Open in IMG/M
Ga0186465_117546	Not Available	802	Open in IMG/M
Ga0186465_118470	All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Retaria → Foraminifera → Monothalamids → Reticulomyxidae → Reticulomyxa → Reticulomyxa filosa	755	Open in IMG/M
Ga0186465_118833	Not Available	737	Open in IMG/M
Ga0186465_118950	Not Available	732	Open in IMG/M
Ga0186465_119197	Not Available	719	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0186465_113095

Not Available

1083

Open in IMG/M

Ga0186465_114018

All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Retaria → Foraminifera → Rotaliida → Elphidiidae → Elphidium → Elphidium margaritaceum

1017

Open in IMG/M

Ga0186465_115435

All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Retaria → Foraminifera

924

Open in IMG/M

Ga0186465_115905

All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Retaria → Foraminifera → Monothalamids → Reticulomyxidae → Reticulomyxa → Reticulomyxa filosa

894

Open in IMG/M

Ga0186465_116276

All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Retaria → Foraminifera → Monothalamids → Reticulomyxidae → Reticulomyxa → Reticulomyxa filosa

871

Open in IMG/M

Ga0186465_116490

Not Available

860

Open in IMG/M

Ga0186465_117546

Not Available

802

Open in IMG/M

Ga0186465_118470

All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Retaria → Foraminifera → Monothalamids → Reticulomyxidae → Reticulomyxa → Reticulomyxa filosa

755

Open in IMG/M

Ga0186465_118833

Not Available

737

Open in IMG/M

Ga0186465_118950

Not Available

732

Open in IMG/M

Ga0186465_119197

Not Available

719

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0186465_113095	Ga0186465_1130952	F070865	SHLRCNIMAVPFFSDFTKRTKDYFKRDKYDLGQGIEIAAKCGGDIGLKGKFSSVGGPQVRSKFVATMKRDNGREIEVTEDLNKGLGLKVTLPKLYRNIDLQSEHSNADVEVTAKYQPSAEAKNSFYSAKVAGYFNPSKNGKRVCSTKAEFAVGDDQLNLSVGGDITIVDEAKNDGASQSPDPKIKSYTLGFLYTPSKSTQYSVIYTPDAQSNGMEYEFTCFRRMSEKCALSAKAFGKVDTKLTGYPPVISLAGGWTLGANYLQAFVNSRKEWGLAYKVRVSDTASLNLGVSSFLSADQRSDTKFGYKLSV
Ga0186465_114018	Ga0186465_1140181	F075672	MALPEKTATIDPDREWALGNPDYKAISWYSSADGRFEEKLARESPLDSFSGLNYNKIARGDNEYYGSTTAPLYAYEFDEDAYYREFQPVKSDEQVQTELNEPVEKFEAKLKEFVDKGEELVWTPAMEEMARGCPIAPARAIQYEISPYFQLNTDGYRKHWANTRLVEFRPMLRMQQKWMNTSSDFFFRFQIMRWNLSSKIRMRYWKMVASGVYFGLLIDHFWARQYKRKFKWH
Ga0186465_115435	Ga0186465_1154352	F015563	VNLLPHSFETYYSSEKTLQQPEACQCSCCMSAPKVSRAISARPAFWGKWGIYNPNVAKEYLKQAYNRGYGQPLISGRENGWGTTSLHAYMARRWNYDWLKMIAMRVDAERVPLLVLRRQIWMARVEYWLRRWNTRKAINRAAKVEWAYIKERLHQPMTWTGRDAQHALLWLINVAGLWCIGEVVSRKSLYGYDVATPEWTPSKPKFVPGFYHTYDPFENYPFENQPNYITKQFQRSSWWHNSKEVYWAPHRIPGGYPHG
Ga0186465_115905	Ga0186465_1159051	F010522	KKHLLLLCVAKNPSLSAKHLAEYIIMLSRLSYRTVLCTKSPFISVLSARSFSTLDEKGADRIEDRLAGLMKTDAEIDAELKTHFDDEGSYKPPHMSSFPSMTRRDVMMNVRIPPLGIEPPPFGEDQIREITEKTTLTRENIEWTRKHWLDQEIKPDQKEHAKLAYDMLEMYKKGVSYATINLWIDYYSGADIPGNKDAIYNRSWARIDS
Ga0186465_116276	Ga0186465_1162761	F054572	MVRPEIFLTNTGIPNPLAKLDPRYHPLGQPGPRHRGPVWICKVPWGLRLPAFVLTYCFLAWNGRHFMFPHRARTVHNVELPIFTEREVRGEWWDRFCKHSDPFRFGHIYAKIQEDRIRKAKREGLLPENYPENEEQLNQMDPAVFEAMIPEIKKLKFVPGKDRCDGMVGYRGTMPKYHGIAEE
Ga0186465_116490	Ga0186465_1164901	F015960	MFRLNKPITNLARRGCTLYKARSMTPALVLASTRSAGTKGAPPISIDDLYGLYFLSEPKICPPVERAPQDMFDTDMRLQEVVVYLNGGLHAAKDKITEDFVRHMFESRVVFFPRDASSKPQEFRDILREKGGTEELPQLWIQGKLVASGSELGDKEHVYDLCTPARRPWPREGPYRMGFYNREGVTQSDKIIGLPQ
Ga0186465_117546	Ga0186465_1175461	F086594	MTAKRSVLQFLQKRCFQARPQKIPFPPPVPMKTQFNLSHIEPIKNYELAVSDSGDNFEKHNSLYQHYQVGECYVTHSFVDFERFFGGCYGEYWPSHFGGGYHKFLRRRSDEPAQYNAKYPWRNWIRRKCDERGIHWDFPRGQDYHIIARWLLSIYMIVFVARQYGNYKAHRANAKPLEPEDDYPLRFNLPFYVYIIHEQSAPNFE
Ga0186465_118470	Ga0186465_1184702	F091322	MAAAATSTAFPRIISHNLLTGSAFLSYSRLVAFGFGYLYANAKLAYLSGYVESENEKKFAQIREAEISANTLRGVTFHAPQVWDPEYTELQMRFRDCYPDFYLHPNDEFVYQLTRGKQKDQKVKEELHAEAVAFLKEWKSSEGK
Ga0186465_118833	Ga0186465_1188331	F057102	MPVVSHRTDFCLAHRLKWKIVPPPAVIPPKPERIIRYGAYRLKLKPFPTAGIAFGIPLIGSIILSQAFYYFVAKPHRERFREYYFSNIATDEPDSYFLRAWKAQLPVFPTTKEEYDDLSFRRDWEIFRAPPLVPYDVKGYNKKKGKNMDFEKEIFYQKAIYDLNWIFPHN
Ga0186465_118950	Ga0186465_1189501	F059642	MYALRLGSKRFVAASKVLQPHSARAPAALSLVSRRNNGHVYDKRNYIPEKDDYNVSPTARPWDHFTLRLNQNRHRRWGQYMLWFFTLYLFWGWFKFMVPRQALNKVEKWDYQAKYWRDGYWIREFPEGLVIKEWANGKVSVEPGQSSRDSLPVRILNKIFFVRDCKG
Ga0186465_119197	Ga0186465_1191971	F058691	MIRYSPWDLVDFVTLKHPLIGLGGAVYGYCYFYKWPIQDAEANRTQRWRDNWRAEVHYQEAIDWDTKKSRDDMHKFIEGQKEKYGSLKKAIAAYEKRTGKTAPAFLLNDPVYDHTLKRVGVPIKGDEEPHFLWDGTAYMKQSERPPTFADGKVRVPEHPRFYLQ

Scaffold ID

Protein ID

Family

Sequence

Ga0186465_113095

Ga0186465_1130952

F070865

SHLRCNIMAVPFFSDFTKRTKDYFKRDKYDLGQGIEIAAKCGGDIGLKGKFSSVGGPQVRSKFVATMKRDNGREIEVTEDLNKGLGLKVTLPKLYRNIDLQSEHSNADVEVTAKYQPSAEAKNSFYSAKVAGYFNPSKNGKRVCSTKAEFAVGDDQLNLSVGGDITIVDEAKNDGASQSPDPKIKSYTLGFLYTPSKSTQYSVIYTPDAQSNGMEYEFTCFRRMSEKCALSAKAFGKVDTKLTGYPPVISLAGGWTLGANYLQAFVNSRKEWGLAYKVRVSDTASLNLGVSSFLSADQRSDTKFGYKLSV

Ga0186465_114018

Ga0186465_1140181

F075672

MALPEKTATIDPDREWALGNPDYKAISWYSSADGRFEEKLARESPLDSFSGLNYNKIARGDNEYYGSTTAPLYAYEFDEDAYYREFQPVKSDEQVQTELNEPVEKFEAKLKEFVDKGEELVWTPAMEEMARGCPIAPARAIQYEISPYFQLNTDGYRKHWANTRLVEFRPMLRMQQKWMNTSSDFFFRFQIMRWNLSSKIRMRYWKMVASGVYFGLLIDHFWARQYKRKFKWH

Ga0186465_115435

Ga0186465_1154352

F015563

VNLLPHSFETYYSSEKTLQQPEACQCSCCMSAPKVSRAISARPAFWGKWGIYNPNVAKEYLKQAYNRGYGQPLISGRENGWGTTSLHAYMARRWNYDWLKMIAMRVDAERVPLLVLRRQIWMARVEYWLRRWNTRKAINRAAKVEWAYIKERLHQPMTWTGRDAQHALLWLINVAGLWCIGEVVSRKSLYGYDVATPEWTPSKPKFVPGFYHTYDPFENYPFENQPNYITKQFQRSSWWHNSKEVYWAPHRIPGGYPHG

Ga0186465_115905

Ga0186465_1159051

F010522

KKHLLLLCVAKNPSLSAKHLAEYIIMLSRLSYRTVLCTKSPFISVLSARSFSTLDEKGADRIEDRLAGLMKTDAEIDAELKTHFDDEGSYKPPHMSSFPSMTRRDVMMNVRIPPLGIEPPPFGEDQIREITEKTTLTRENIEWTRKHWLDQEIKPDQKEHAKLAYDMLEMYKKGVSYATINLWIDYYSGADIPGNKDAIYNRSWARIDS

Ga0186465_116276

Ga0186465_1162761

F054572

MVRPEIFLTNTGIPNPLAKLDPRYHPLGQPGPRHRGPVWICKVPWGLRLPAFVLTYCFLAWNGRHFMFPHRARTVHNVELPIFTEREVRGEWWDRFCKHSDPFRFGHIYAKIQEDRIRKAKREGLLPENYPENEEQLNQMDPAVFEAMIPEIKKLKFVPGKDRCDGMVGYRGTMPKYHGIAEE

Ga0186465_116490

Ga0186465_1164901

F015960

MFRLNKPITNLARRGCTLYKARSMTPALVLASTRSAGTKGAPPISIDDLYGLYFLSEPKICPPVERAPQDMFDTDMRLQEVVVYLNGGLHAAKDKITEDFVRHMFESRVVFFPRDASSKPQEFRDILREKGGTEELPQLWIQGKLVASGSELGDKEHVYDLCTPARRPWPREGPYRMGFYNREGVTQSDKIIGLPQ

Ga0186465_117546

Ga0186465_1175461

F086594

MTAKRSVLQFLQKRCFQARPQKIPFPPPVPMKTQFNLSHIEPIKNYELAVSDSGDNFEKHNSLYQHYQVGECYVTHSFVDFERFFGGCYGEYWPSHFGGGYHKFLRRRSDEPAQYNAKYPWRNWIRRKCDERGIHWDFPRGQDYHIIARWLLSIYMIVFVARQYGNYKAHRANAKPLEPEDDYPLRFNLPFYVYIIHEQSAPNFE

Ga0186465_118470

Ga0186465_1184702

F091322

MAAAATSTAFPRIISHNLLTGSAFLSYSRLVAFGFGYLYANAKLAYLSGYVESENEKKFAQIREAEISANTLRGVTFHAPQVWDPEYTELQMRFRDCYPDFYLHPNDEFVYQLTRGKQKDQKVKEELHAEAVAFLKEWKSSEGK

Ga0186465_118833

Ga0186465_1188331

F057102

MPVVSHRTDFCLAHRLKWKIVPPPAVIPPKPERIIRYGAYRLKLKPFPTAGIAFGIPLIGSIILSQAFYYFVAKPHRERFREYYFSNIATDEPDSYFLRAWKAQLPVFPTTKEEYDDLSFRRDWEIFRAPPLVPYDVKGYNKKKGKNMDFEKEIFYQKAIYDLNWIFPHN

Ga0186465_118950

Ga0186465_1189501

F059642

MYALRLGSKRFVAASKVLQPHSARAPAALSLVSRRNNGHVYDKRNYIPEKDDYNVSPTARPWDHFTLRLNQNRHRRWGQYMLWFFTLYLFWGWFKFMVPRQALNKVEKWDYQAKYWRDGYWIREFPEGLVIKEWANGKVSVEPGQSSRDSLPVRILNKIFFVRDCKG

Ga0186465_119197

Ga0186465_1191971

F058691

MIRYSPWDLVDFVTLKHPLIGLGGAVYGYCYFYKWPIQDAEANRTQRWRDNWRAEVHYQEAIDWDTKKSRDDMHKFIEGQKEKYGSLKKAIAAYEKRTGKTAPAFLLNDPVYDHTLKRVGVPIKGDEEPHFLWDGTAYMKQSERPPTFADGKVRVPEHPRFYLQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300017273: Metatranscriptome of marine eukaryotic communities from English Channel grown at 18 C, 40 psu salinity and 447 ?mol photons light - Elphidium margaritaceum (MMETSP1385)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences