3300017261: Metatranscriptome of marine eukaryotic communities from English Channel in enriched f/2 medium with filtered seawater, 15 C, 35 psu salinity and 328 ?mol photons light - Coccolithus braarudii PLY182g (MMETSP0164_2)

Overview

Basic Information

• IMG/M Taxon OID: 3300017261
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128947 | Gp0212175 | Ga0186463
• Sample Name: Metatranscriptome of marine eukaryotic communities from English Channel in enriched f/2 medium with filtered seawater, 15 C, 35 psu salinity and 328 ?mol photons light - Coccolithus braarudii PLY182g (MMETSP0164_2)
• Sequencing Status: Permanent Draft
• Sequencing Center: National Center for Genome Resources
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 28146103
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Coccolithales → Calcidiscaceae → Calcidiscus → Calcidiscus leptoporus	1
All Organisms → cellular organisms → Eukaryota → Haptista	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: English Channel
• Coordinates
  • Lat. (^o): 50.033
  • Long. (^o): 4.366
  • Alt. (m): N/A
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024007	Metagenome / Metatranscriptome	207	Y
F049399	Metagenome / Metatranscriptome	146	Y
F050105	Metagenome / Metatranscriptome	145	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0186463_103563	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi	1500
Ga0186463_110164	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Coccolithales → Calcidiscaceae → Calcidiscus → Calcidiscus leptoporus	968
Ga0186463_111317	All Organisms → cellular organisms → Eukaryota → Haptista	901

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0186463_103563	Ga0186463_1035631	F049399	VLSFSEIPAEFAGFVKAKQKELAFNMLSSSAVGVVFANIAALVAGDASVELLVQTCQLQIPLLILTLIASVLSGKVENKPW
Ga0186463_110164	Ga0186463_1101641	F050105	GGGASDAFLGAHLVTDRGRKKLRADRYVELRRLLPRRLLKLLQAWYSSLRKTPSETAAFQEKTRRHEYFPEVLSTFLNLALEPLASAMSQTTVAPTYPFPITYVPGGGIHPHLDVSDNELSLTFQVQLEGEIPQWPLVFLDPRGQELSNLNASKAKQVVLKDNDGVLYYGPDIVHWRENQLSTLTQIVFAFREEDVTHCNNQ
Ga0186463_111317	Ga0186463_1113172	F024007	LKIMAKAAPHAQPTNDGGIVVALVLLVAALASIFFGAVALYASADIVLTSEQKQKSVRARRLARLLSGWANVGNAAVHGLLIIMLVTDSERYKQFFPDEAEMPLGTAFMLVLNLLVGRCTLKGGGIVLALIWNSFVAVAGSLIPVVWPKFLDVGMITWPYLAVFLWLSIFAFESFAFFFSVVAFALKDAHAVKED