NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300017258

3300017258: Metatranscriptome of marine eukaryotic communities from North Pacific Ocean in marine media K with soil extract, 18 C, 36 psu salinity and 435 ?mol photons light - Haptolina ericina CCMP 281 (MMETSP1096)



Overview

Basic Information
IMG/M Taxon OID3300017258 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0128947 | Gp0212068 | Ga0186356
Sample NameMetatranscriptome of marine eukaryotic communities from North Pacific Ocean in marine media K with soil extract, 18 C, 36 psu salinity and 435 ?mol photons light - Haptolina ericina CCMP 281 (MMETSP1096)
Sequencing StatusPermanent Draft
Sequencing CenterNational Center for Genome Resources
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size47580456
Sequencing Scaffolds17
Novel Protein Genes18
Associated Families18

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii2
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila3
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Phaeocystales → Phaeocystaceae → Phaeocystis → Phaeocystis antarctica1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina ericina2
Not Available2
All Organisms → cellular organisms → Eukaryota → Haptista3
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Isochrysidaceae → Chrysotila → Chrysotila carterae1
All Organisms → cellular organisms → Eukaryota → Discoba → Heterolobosea → Tetramitia → Eutetramitia → Vahlkampfiidae → Naegleria → Naegleria gruberi1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameThe Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biomemarine water bodysea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationNorth Pacific Ocean
CoordinatesLat. (o)49.6Long. (o)-140.6166Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005228Metagenome / Metatranscriptome407Y
F006207Metagenome / Metatranscriptome378Y
F008291Metagenome / Metatranscriptome335Y
F008555Metatranscriptome331Y
F012945Metagenome / Metatranscriptome275Y
F015173Metatranscriptome256Y
F015559Metagenome / Metatranscriptome253Y
F016912Metagenome / Metatranscriptome243Y
F024700Metagenome / Metatranscriptome204Y
F043734Metagenome / Metatranscriptome155Y
F057823Metatranscriptome135N
F067275Metatranscriptome125N
F071920Metagenome / Metatranscriptome121Y
F079481Metatranscriptome115N
F080828Metatranscriptome114Y
F080844Metagenome / Metatranscriptome114N
F088199Metatranscriptome109N
F094737Metatranscriptome105N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0186356_107978All Organisms → cellular organisms → Eukaryota1472Open in IMG/M
Ga0186356_111472All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii1260Open in IMG/M
Ga0186356_111562All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila1256Open in IMG/M
Ga0186356_113496All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Phaeocystales → Phaeocystaceae → Phaeocystis → Phaeocystis antarctica1173Open in IMG/M
Ga0186356_114052All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila1149Open in IMG/M
Ga0186356_114903All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina ericina1114Open in IMG/M
Ga0186356_115314Not Available1097Open in IMG/M
Ga0186356_115578All Organisms → cellular organisms → Eukaryota → Haptista1087Open in IMG/M
Ga0186356_116822All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales1043Open in IMG/M
Ga0186356_119057All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Isochrysidaceae → Chrysotila → Chrysotila carterae968Open in IMG/M
Ga0186356_119171All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila964Open in IMG/M
Ga0186356_119397All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii957Open in IMG/M
Ga0186356_119874All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina ericina942Open in IMG/M
Ga0186356_121126All Organisms → cellular organisms → Eukaryota → Haptista904Open in IMG/M
Ga0186356_122174All Organisms → cellular organisms → Eukaryota → Haptista872Open in IMG/M
Ga0186356_126549All Organisms → cellular organisms → Eukaryota → Discoba → Heterolobosea → Tetramitia → Eutetramitia → Vahlkampfiidae → Naegleria → Naegleria gruberi749Open in IMG/M
Ga0186356_129209Not Available674Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0186356_107978Ga0186356_1079782F015559TISEETRVAMSHKWGTSTKVGDTFPDVEVDIGFLGLSPDNQKKTGALNAGKKVLWVSLPGAFTPT
Ga0186356_111472Ga0186356_1114722F079481MGTAAGFFGITYQGAVNGLASNTLSIFNMDHPDDRAWLKLTFDFVAPSGELGYGQVVELLQYFYRQRSEGATLSGTYLSSYPDSEAEFISNLFEGPSATLSFDALLVALMEAQANFAEPTAPLEYNSNMVLRTDKVKHTRKMLDPQQQFRKPLTTAQEVGWELTKDSAPGRPFHLRTSATTQFADASEKQAWGRSIGGEFSEYATRKLLEYGGFGMGV
Ga0186356_111562Ga0186356_1115621F005228SCLRSHSGSKMGDNPKQIVAAKYQQTTSRATPDAVARELRKLPASSGPLDSRKRALHDLAHALAYVQEQHKTKVVETCTKEDAANLLLSLLADIDAAPPVPASEDVIRVGRRVLGMGPMDARLYVLSCFVNLSYLGGAGMLRLPPAGQPHSAMEVLIDTLLNTADSESVLFYSVAGLYNLSNDGSFAELAGRKPGLLAKLEALSASPNPDTVKYSSGTVEYWKKHAGSNWPPA
Ga0186356_113496Ga0186356_1134961F057823MDYSRTGSSRGVYKRNGEIMAIPHAGIEASWALNEKTAARGQTQSTMKDSFKDPNLKQALTAYHPNAQRSRMPVQFKNEAKPFKRFCQVRNQHTYNFFDKGTGAGYVRFRTTSQNYYDYDTKALSVGESNQGIVSEKSKWIHQKQTM
Ga0186356_114052Ga0186356_1140521F012945VDSVICYKELIAKEDAARRDWQTRYGKGWGASAAAWRGLEPFETTGMSNSKMELPAGIPKPALRHPELYRDTVGDEGLTGGTPKRFGGQWDVTARGSTVDTEEKPPRVVKSGPHDCYCDIGYNCWKMAGRARTHNFGLMGTFEREFWTNTPGELAMVWNSKPKASAAEKSMAELDKKVAA
Ga0186356_114903Ga0186356_1149031F094737VGFRLPMAPFQPSESLLSLCTEKSPLGWHWDEHPAPSIRTFEAGPNGPPGLDRQLEGFGAPTPTARANEVPLIDGRMKTFPDQHPSLGSVKVAVASGCPALIHKQMDSDQWKSTYQATIDEQQPTFRKGREGKRMVQPLFGAQDLYNPPRETFVEPRGAMPTVVRDMRVFKHMGTLTKDGQW
Ga0186356_115314Ga0186356_1153141F015173PLWPWEPFIAMPFIFEFLKAKGKLPEVVLFLTVFAALFCGAHGGGLIQAIDTFFLGGPGICVPALPGAPDDIDTNLMCKMMAVHIFMMLAMGGFFAYLAIDPAKRVPKVNLEAVYYSRATLFFIVGGISQDIPYWAVCLQYPERFGEFMTSTGFYSQRWFTPGLTEFVEPFLWIAYGIYSYTKAKAAWGAAKFAMV
Ga0186356_115578Ga0186356_1155781F008555SSLFALESQNLLPEFLNTYSTMLHVAALIPAVLSNTVEVSTSDIRKGAAFDNLKASWGKALNVGDFKTNLKCNYDYNDNKDFLKEASLSGDLMDDGDMKVSYDVSHNFKSKNTEVSLSAVTQGTTLSADYDTDSSLKEVSLQRDVELGDQKVNLKPSWLVQAKTARVKMMSAMGGGNVQAQVDYNTDGGSTAYEVGYSKQLEDGKDVSATFTPDSKELEVEYVDNNFEGGATWTAKATVPLEDVGNTLDAAKLTLKRSWAW
Ga0186356_116822Ga0186356_1168221F016912DNGTDMEGKPLPGMCHMPEEINRLVYEGVLYFFEQETDLRVDKPDPFLRIRQWRREFISNVHISTDVFFTKRVVTQEARYIFDQYTPGFEAGDSFMLLHDYQETYTDFDEVAAQYAAFYFRLSSEFIRQRRSYTSLFALFEQWGAMGAFLYFVFGMTAHQFNSWNFHRQVRGLDIRKLDKGQFTPFGRLIDKSFQMPRELQCMQAD
Ga0186356_119057Ga0186356_1190571F071920GVFFMLSLRRWLGATPPVFNNSKCPAFWELQAPHVATDFDFDRDVPGYYYELAFHDLTQRPLCPSAPRCITSEKAVQTHTDGVRYVNDTWDLQCFGHPYPQTLLFNRTEHNGYLRGYVPTTLIPFLPKGIVSSLVFPDTIVDFKSGPGGWLLELQCVEAFGGVKFVGINFYSKLKTEVAFNEMYAAAMARGLGLWMNSKPWGLSRVNHTDCPNEPHVQSGETLRTVLS
Ga0186356_119171Ga0186356_1191711F067275ATRVAQDLKGTMPAAETGTGAAAQGSSFWAKVGSDWKADGGTVTSSGMLAEERFAVSGVVVSAGVHFFMWKINASALPDGHMFLGVAAASGVTDGEAKCKTWGFSPPTGNLYIGEKLNEHGAEQMKKHFFVDDKESLLGKAVGSSVLMKVDMGAKALSYSINGNEFIEAGIALPEGGVRPWCFLYHEGDSVTIEEVNDEGVGTGGASRPSTAGTDSGIC
Ga0186356_119397Ga0186356_1193971F008291EQLKSMDIADLRATRIASNSLKNDVLNLQRVVSNAPSAEPESKMWAFAGHQGRRVLVDRREPAKPVLDNPIYTSSSWKIGMRATEVHPVSGQHSYDTGNLYRTVHWKDTGFGLDGRFTDRLADAGMWRHDGLNTNKTRSKAVADPSQWGTPKETLTFGM
Ga0186356_119874Ga0186356_1198741F006207MLSRVPRKFKDAGAPKLLSFSLKYPPFVAVCIGDNYMLVFGTSGQHVNEDVGLTFPDDYGPITGFQWLEDDVVLVALANGYVTSVDFGAMVRMRQQHGLPECVKATGTTKVFNEYLKCLTYSTASQKIACVGDRGFKVITRVKDELEVLADISLDYELTLGNCLEVIRWDQEGKAVTITATNGYLWSYEIANK
Ga0186356_121126Ga0186356_1211261F080828MVVLFVTTALLSKLPWDARTKHIDHDCWAPDYCEPSQFRYKLCKLRLRGRRKANDTYACSEGEFCEEVDCEGKCWLPAECRCEKDGKLQGRMLCTEDCFAHPSTQWGLCVPLAEDGELPDEDEPVKTHFHFYTPSELLYNAKLHIDEDSPMRRTPDPVSHDEL
Ga0186356_122174Ga0186356_1221741F088199LARRYQDTPMKLLLLTIALSCASALLVSPVASPTLAMGRATAPTMACNGGKGGQGGKNPPKDKRVYRPKLHKIIQQSDSEETVKSILLSKTTEAMLLKMNWKYRRSAGHQVRKRAAQFGVEVPKGFAAFDVRPRNTKKHLLVPSIQ
Ga0186356_124305Ga0186356_1243051F080844FSMAAPGDKTYVVGAVTTRLTVTVPHGIVGGELVRVAAPDGSYHSIMVPAGLAAGQQFSVELLAGSNAVDLAKLKMELDAERALRRETQQEALRCRTALEDLQQKRMADHAFFRDMIKRQRRSVEHLSQQIEI
Ga0186356_126549Ga0186356_1265491F024700FKMVKGRSTHNQGAYATMDLTGIVSTLESHWVVLDAELSEIRKDFGTLRALTRKHGEFWNRPMAHLKKLRTEKENLLKEIKFQMELFNLHIGQGRDLCAKLSAVGSVIKTPPAQLHSQLAIEVVSPILANSQNPVSVSHYSS
Ga0186356_129209Ga0186356_1292091F043734MFRMKQLGVPAMRWGGAFGAIGFFLLFEDLPQLILQTQYGNFPGWHGVAVAFGVIKDKSAEDA

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