Basic Information | |
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IMG/M Taxon OID | 3300017258 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0128947 | Gp0212068 | Ga0186356 |
Sample Name | Metatranscriptome of marine eukaryotic communities from North Pacific Ocean in marine media K with soil extract, 18 C, 36 psu salinity and 435 ?mol photons light - Haptolina ericina CCMP 281 (MMETSP1096) |
Sequencing Status | Permanent Draft |
Sequencing Center | National Center for Genome Resources |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 47580456 |
Sequencing Scaffolds | 17 |
Novel Protein Genes | 18 |
Associated Families | 18 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
All Organisms → cellular organisms → Eukaryota | 1 |
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 2 |
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila | 3 |
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Phaeocystales → Phaeocystaceae → Phaeocystis → Phaeocystis antarctica | 1 |
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina ericina | 2 |
Not Available | 2 |
All Organisms → cellular organisms → Eukaryota → Haptista | 3 |
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales | 1 |
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Isochrysidaceae → Chrysotila → Chrysotila carterae | 1 |
All Organisms → cellular organisms → Eukaryota → Discoba → Heterolobosea → Tetramitia → Eutetramitia → Vahlkampfiidae → Naegleria → Naegleria gruberi | 1 |
Ecosystem Assignment (GOLD) | |
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Name | The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp) |
Type | Host-Associated |
Taxonomy | Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp) |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | marine biome → marine water body → sea water |
Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
Location Information | ||||||||
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Location | North Pacific Ocean | |||||||
Coordinates | Lat. (o) | 49.6 | Long. (o) | -140.6166 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F005228 | Metagenome / Metatranscriptome | 407 | Y |
F006207 | Metagenome / Metatranscriptome | 378 | Y |
F008291 | Metagenome / Metatranscriptome | 335 | Y |
F008555 | Metatranscriptome | 331 | Y |
F012945 | Metagenome / Metatranscriptome | 275 | Y |
F015173 | Metatranscriptome | 256 | Y |
F015559 | Metagenome / Metatranscriptome | 253 | Y |
F016912 | Metagenome / Metatranscriptome | 243 | Y |
F024700 | Metagenome / Metatranscriptome | 204 | Y |
F043734 | Metagenome / Metatranscriptome | 155 | Y |
F057823 | Metatranscriptome | 135 | N |
F067275 | Metatranscriptome | 125 | N |
F071920 | Metagenome / Metatranscriptome | 121 | Y |
F079481 | Metatranscriptome | 115 | N |
F080828 | Metatranscriptome | 114 | Y |
F080844 | Metagenome / Metatranscriptome | 114 | N |
F088199 | Metatranscriptome | 109 | N |
F094737 | Metatranscriptome | 105 | N |
Scaffold | Taxonomy | Length | IMG/M Link |
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Ga0186356_107978 | All Organisms → cellular organisms → Eukaryota | 1472 | Open in IMG/M |
Ga0186356_111472 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 1260 | Open in IMG/M |
Ga0186356_111562 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila | 1256 | Open in IMG/M |
Ga0186356_113496 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Phaeocystales → Phaeocystaceae → Phaeocystis → Phaeocystis antarctica | 1173 | Open in IMG/M |
Ga0186356_114052 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila | 1149 | Open in IMG/M |
Ga0186356_114903 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina ericina | 1114 | Open in IMG/M |
Ga0186356_115314 | Not Available | 1097 | Open in IMG/M |
Ga0186356_115578 | All Organisms → cellular organisms → Eukaryota → Haptista | 1087 | Open in IMG/M |
Ga0186356_116822 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales | 1043 | Open in IMG/M |
Ga0186356_119057 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Isochrysidaceae → Chrysotila → Chrysotila carterae | 968 | Open in IMG/M |
Ga0186356_119171 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila | 964 | Open in IMG/M |
Ga0186356_119397 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 957 | Open in IMG/M |
Ga0186356_119874 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina ericina | 942 | Open in IMG/M |
Ga0186356_121126 | All Organisms → cellular organisms → Eukaryota → Haptista | 904 | Open in IMG/M |
Ga0186356_122174 | All Organisms → cellular organisms → Eukaryota → Haptista | 872 | Open in IMG/M |
Ga0186356_126549 | All Organisms → cellular organisms → Eukaryota → Discoba → Heterolobosea → Tetramitia → Eutetramitia → Vahlkampfiidae → Naegleria → Naegleria gruberi | 749 | Open in IMG/M |
Ga0186356_129209 | Not Available | 674 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
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Ga0186356_107978 | Ga0186356_1079782 | F015559 | TISEETRVAMSHKWGTSTKVGDTFPDVEVDIGFLGLSPDNQKKTGALNAGKKVLWVSLPGAFTPT |
Ga0186356_111472 | Ga0186356_1114722 | F079481 | MGTAAGFFGITYQGAVNGLASNTLSIFNMDHPDDRAWLKLTFDFVAPSGELGYGQVVELLQYFYRQRSEGATLSGTYLSSYPDSEAEFISNLFEGPSATLSFDALLVALMEAQANFAEPTAPLEYNSNMVLRTDKVKHTRKMLDPQQQFRKPLTTAQEVGWELTKDSAPGRPFHLRTSATTQFADASEKQAWGRSIGGEFSEYATRKLLEYGGFGMGV |
Ga0186356_111562 | Ga0186356_1115621 | F005228 | SCLRSHSGSKMGDNPKQIVAAKYQQTTSRATPDAVARELRKLPASSGPLDSRKRALHDLAHALAYVQEQHKTKVVETCTKEDAANLLLSLLADIDAAPPVPASEDVIRVGRRVLGMGPMDARLYVLSCFVNLSYLGGAGMLRLPPAGQPHSAMEVLIDTLLNTADSESVLFYSVAGLYNLSNDGSFAELAGRKPGLLAKLEALSASPNPDTVKYSSGTVEYWKKHAGSNWPPA |
Ga0186356_113496 | Ga0186356_1134961 | F057823 | MDYSRTGSSRGVYKRNGEIMAIPHAGIEASWALNEKTAARGQTQSTMKDSFKDPNLKQALTAYHPNAQRSRMPVQFKNEAKPFKRFCQVRNQHTYNFFDKGTGAGYVRFRTTSQNYYDYDTKALSVGESNQGIVSEKSKWIHQKQTM |
Ga0186356_114052 | Ga0186356_1140521 | F012945 | VDSVICYKELIAKEDAARRDWQTRYGKGWGASAAAWRGLEPFETTGMSNSKMELPAGIPKPALRHPELYRDTVGDEGLTGGTPKRFGGQWDVTARGSTVDTEEKPPRVVKSGPHDCYCDIGYNCWKMAGRARTHNFGLMGTFEREFWTNTPGELAMVWNSKPKASAAEKSMAELDKKVAA |
Ga0186356_114903 | Ga0186356_1149031 | F094737 | VGFRLPMAPFQPSESLLSLCTEKSPLGWHWDEHPAPSIRTFEAGPNGPPGLDRQLEGFGAPTPTARANEVPLIDGRMKTFPDQHPSLGSVKVAVASGCPALIHKQMDSDQWKSTYQATIDEQQPTFRKGREGKRMVQPLFGAQDLYNPPRETFVEPRGAMPTVVRDMRVFKHMGTLTKDGQW |
Ga0186356_115314 | Ga0186356_1153141 | F015173 | PLWPWEPFIAMPFIFEFLKAKGKLPEVVLFLTVFAALFCGAHGGGLIQAIDTFFLGGPGICVPALPGAPDDIDTNLMCKMMAVHIFMMLAMGGFFAYLAIDPAKRVPKVNLEAVYYSRATLFFIVGGISQDIPYWAVCLQYPERFGEFMTSTGFYSQRWFTPGLTEFVEPFLWIAYGIYSYTKAKAAWGAAKFAMV |
Ga0186356_115578 | Ga0186356_1155781 | F008555 | SSLFALESQNLLPEFLNTYSTMLHVAALIPAVLSNTVEVSTSDIRKGAAFDNLKASWGKALNVGDFKTNLKCNYDYNDNKDFLKEASLSGDLMDDGDMKVSYDVSHNFKSKNTEVSLSAVTQGTTLSADYDTDSSLKEVSLQRDVELGDQKVNLKPSWLVQAKTARVKMMSAMGGGNVQAQVDYNTDGGSTAYEVGYSKQLEDGKDVSATFTPDSKELEVEYVDNNFEGGATWTAKATVPLEDVGNTLDAAKLTLKRSWAW |
Ga0186356_116822 | Ga0186356_1168221 | F016912 | DNGTDMEGKPLPGMCHMPEEINRLVYEGVLYFFEQETDLRVDKPDPFLRIRQWRREFISNVHISTDVFFTKRVVTQEARYIFDQYTPGFEAGDSFMLLHDYQETYTDFDEVAAQYAAFYFRLSSEFIRQRRSYTSLFALFEQWGAMGAFLYFVFGMTAHQFNSWNFHRQVRGLDIRKLDKGQFTPFGRLIDKSFQMPRELQCMQAD |
Ga0186356_119057 | Ga0186356_1190571 | F071920 | GVFFMLSLRRWLGATPPVFNNSKCPAFWELQAPHVATDFDFDRDVPGYYYELAFHDLTQRPLCPSAPRCITSEKAVQTHTDGVRYVNDTWDLQCFGHPYPQTLLFNRTEHNGYLRGYVPTTLIPFLPKGIVSSLVFPDTIVDFKSGPGGWLLELQCVEAFGGVKFVGINFYSKLKTEVAFNEMYAAAMARGLGLWMNSKPWGLSRVNHTDCPNEPHVQSGETLRTVLS |
Ga0186356_119171 | Ga0186356_1191711 | F067275 | ATRVAQDLKGTMPAAETGTGAAAQGSSFWAKVGSDWKADGGTVTSSGMLAEERFAVSGVVVSAGVHFFMWKINASALPDGHMFLGVAAASGVTDGEAKCKTWGFSPPTGNLYIGEKLNEHGAEQMKKHFFVDDKESLLGKAVGSSVLMKVDMGAKALSYSINGNEFIEAGIALPEGGVRPWCFLYHEGDSVTIEEVNDEGVGTGGASRPSTAGTDSGIC |
Ga0186356_119397 | Ga0186356_1193971 | F008291 | EQLKSMDIADLRATRIASNSLKNDVLNLQRVVSNAPSAEPESKMWAFAGHQGRRVLVDRREPAKPVLDNPIYTSSSWKIGMRATEVHPVSGQHSYDTGNLYRTVHWKDTGFGLDGRFTDRLADAGMWRHDGLNTNKTRSKAVADPSQWGTPKETLTFGM |
Ga0186356_119874 | Ga0186356_1198741 | F006207 | MLSRVPRKFKDAGAPKLLSFSLKYPPFVAVCIGDNYMLVFGTSGQHVNEDVGLTFPDDYGPITGFQWLEDDVVLVALANGYVTSVDFGAMVRMRQQHGLPECVKATGTTKVFNEYLKCLTYSTASQKIACVGDRGFKVITRVKDELEVLADISLDYELTLGNCLEVIRWDQEGKAVTITATNGYLWSYEIANK |
Ga0186356_121126 | Ga0186356_1211261 | F080828 | MVVLFVTTALLSKLPWDARTKHIDHDCWAPDYCEPSQFRYKLCKLRLRGRRKANDTYACSEGEFCEEVDCEGKCWLPAECRCEKDGKLQGRMLCTEDCFAHPSTQWGLCVPLAEDGELPDEDEPVKTHFHFYTPSELLYNAKLHIDEDSPMRRTPDPVSHDEL |
Ga0186356_122174 | Ga0186356_1221741 | F088199 | LARRYQDTPMKLLLLTIALSCASALLVSPVASPTLAMGRATAPTMACNGGKGGQGGKNPPKDKRVYRPKLHKIIQQSDSEETVKSILLSKTTEAMLLKMNWKYRRSAGHQVRKRAAQFGVEVPKGFAAFDVRPRNTKKHLLVPSIQ |
Ga0186356_124305 | Ga0186356_1243051 | F080844 | FSMAAPGDKTYVVGAVTTRLTVTVPHGIVGGELVRVAAPDGSYHSIMVPAGLAAGQQFSVELLAGSNAVDLAKLKMELDAERALRRETQQEALRCRTALEDLQQKRMADHAFFRDMIKRQRRSVEHLSQQIEI |
Ga0186356_126549 | Ga0186356_1265491 | F024700 | FKMVKGRSTHNQGAYATMDLTGIVSTLESHWVVLDAELSEIRKDFGTLRALTRKHGEFWNRPMAHLKKLRTEKENLLKEIKFQMELFNLHIGQGRDLCAKLSAVGSVIKTPPAQLHSQLAIEVVSPILANSQNPVSVSHYSS |
Ga0186356_129209 | Ga0186356_1292091 | F043734 | MFRMKQLGVPAMRWGGAFGAIGFFLLFEDLPQLILQTQYGNFPGWHGVAVAFGVIKDKSAEDA |
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