3300017252: Metatranscriptome of marine eukaryotic communities from Northern Baffin Bay in L1 medium with seawater and antibiotics, 6 C, 36 psu salinity and 388 ?mol photons light - unclassified eukaryote CCMP 2098 (MMETSP0990)

Overview

Basic Information

• IMG/M Taxon OID: 3300017252
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128947 | Gp0212053 | Ga0186341
• Sample Name: Metatranscriptome of marine eukaryotic communities from Northern Baffin Bay in L1 medium with seawater and antibiotics, 6 C, 36 psu salinity and 388 ?mol photons light - unclassified eukaryote CCMP 2098 (MMETSP0990)
• Sequencing Status: Permanent Draft
• Sequencing Center: National Center for Genome Resources
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 40531344
• Sequencing Scaffolds: 7
• Novel Protein Genes: 7
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	5
All Organisms → cellular organisms → Eukaryota	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Northern Baffin Bay
• Coordinates
  • Lat. (^o): 76.285
  • Long. (^o): -73.0575
  • Alt. (m): N/A
  • Depth (m): 75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021038	Metagenome / Metatranscriptome	220	Y
F051149	Metagenome / Metatranscriptome	144	Y
F073111	Metagenome / Metatranscriptome	120	Y
F078398	Metagenome / Metatranscriptome	116	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0186341_106074	Not Available	1406
Ga0186341_108216	Not Available	1259
Ga0186341_108330	Not Available	1253
Ga0186341_110588	Not Available	1131
Ga0186341_115768	All Organisms → cellular organisms → Eukaryota	921
Ga0186341_115791	Not Available	920
Ga0186341_123896	All Organisms → cellular organisms → Eukaryota → Opisthokonta	662

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0186341_106074	Ga0186341_1060742	F051149	MIVFFGYFFLHQNLFSIMGAAASAPGAFERLPETVDEPTAMALLGNCFDRADWETITGGTGKCPKDTFTTTISVRNHAVSLRAWLEFWRLDELLDTLESLDVMSPTDLMLLEEKEVSKIDLKVVQQKHWAKALAHSKYLQAIDFDKPPSPLYLWLESWRLERIAPGLFNLGCDVKEDIIDVSEQDSASLGLKLLEERRWKQATSQLVKVIRNYDFNDNTRNSAPSLTTWLASLKLEELDEPLKLLGVVELCDLGDMDDRELHSLNLNKLQRKHWDMGMLQVLKARKEAGLDSKNDDPTFRGFLESWRLGRLGPVMQELGAYVQQDLLDLEPTEYSLLKMRPLEAKRFEQAMIALEEEFQQWS
Ga0186341_108216	Ga0186341_1082161	F051149	LKNLQLQRTSQRAPTPLIMGAGASAPGAFDRLPDPVDEATALALLGNCFDRADWETITAGTGKCIRSTFITTIEVRNHALSLRSWLEFWRIDELLEVLESLDVMSPTDLTLLEEKEVSKIGLKAVQKKHWQKALAHSKYLEAIHFDKPPSPLNLWLESWRLDRLGEGLFNLGCDVKEDIIDLMESDAAALGMKLLEERRWKQATAQLLTVIRHYDFNDNTRNSAPSLVTWLASLKLQELDEPLKLLGVVELCDLGDMDDRELASLGLNKLQRKHWDMGMLQVLKAKSEARLDGKNDDPTFRAFLESWRLGRLGPVMGDLGAYVQQDLLDLEPNEYSLLKMRPLEAKRFEQAMIALEEEFQQWT
Ga0186341_108330	Ga0186341_1083301	F051149	NNFALTFRLSSPQQYTMGAGASAPGAFERLPDPVDEPTAMALLGHCFDRADWETITGGTGKVPKDTFITTITVRNHAPSLRAWLEFWRIDELLEILESLDVMSPTDLMLLEEKDISKIHLKAVQKKHWQKAVAHSKYLEAIHFDKPPSPLNLWLESWRLDRLGEGLFNLGCDVKEDIIDLMESDAAALGMKLLEERRWKQATAQLLTVIRHYDFNDNTRNSAPSLVTWLASLKLQELDEPLKLLGVVELCDLGDMDDRELASLGLNKLQRKHWDMGMLQVLKAKSEARLDGKNDDPTFRAFLESWRLGRLGPVMGDLGAYVQQDLLDLEPNEYSLLKMRPLEAKRFEQAMIALEEEFQQW
Ga0186341_110588	Ga0186341_1105881	F051149	ADWETITGGTGSVQKDTFITTITVRNHAPSLRAWLEFWRIDELLEVLESLDVMTPTDLMLLEEKEVLKIELKAVQKKHWQKAVTHSKYLEAINFDKPPSPLHLWLESWRLDRLKSGLYELGCDVKEDIIDLTESDAALLGMRLLEERRWKQACSQLVKVIRNYDFNDNTRNSAPSLTTWLASLKLEELDEPLKLLGVVELCDLGDMDDRELHSLNLNKLQRKHWDMGMLQVLKARKEAGLDSKNDDPTFRGFLESWRLGRLGPVMQELGAYVQQDLLDLEPTEYSLLKMRPLEAKRFEQAMIALEEEFQQWS
Ga0186341_115768	Ga0186341_1157681	F021038	MKVLSAPADKPKIVFHVAMMSLQNFGFFIMYYSLWIATPDAEICADTRFAEGFMALTCFLVAFLCVGMGFGGYTDDAAVFAVYWIAHAVPAVGGYTTCTFLIPMARFSDSGMACASLSPVIGTIVQSVYVVHAGLYWCYVGNMVSVTYFSFLKPSFDFTVKPVVALSALALAEALVFGKLVDIGAFEPLSLPSPKAKLFGLF
Ga0186341_115791	Ga0186341_1157911	F073111	WRLHRLKKGLFDLGCDVKEDIIDLDDTNAALLGMKLLEERRWKQATAQLVKVIRNFNFNDNTRNSAPSLITWLESLKLEELDEPLKLLGVVELCDLGDMDDRELHSLGLNKLQRKHWDMGMLQVLKAKGEAGLDGKNDDPTFRGFLESWRLGRLAPVMDDLGAYVQQDLLDLEPSEYSLLKMRPLEAKRFEQAMIALEEEFQQWA
Ga0186341_123896	Ga0186341_1238961	F078398	GKVHHCLQQRTGVFDLLHYVVSCTLLWAGHVARMSKNNPPKRLMLSWVHEPRLSGGQDMTFSRSLSRHLQNFDLPLAFTEWATIAQDRAKWHRIVTKPPFAIGKPFLRQPRGDTRATPEDQRMAIARHTAEIQEHRTIIAVSANINATTPTNDL