3300017239: Metatranscriptome of coastal eukaryotic communities from Pacific Ocean in f/2 medium, 18 C, 35 psu salinity and 96 ?mol photons light - Thalassiosira rotula CCMP 3096 (MMETSP0403)

Overview

Basic Information

• IMG/M Taxon OID: 3300017239
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128947 | Gp0212370 | Ga0186658
• Sample Name: Metatranscriptome of coastal eukaryotic communities from Pacific Ocean in f/2 medium, 18 C, 35 psu salinity and 96 ?mol photons light - Thalassiosira rotula CCMP 3096 (MMETSP0403)
• Sequencing Status: Permanent Draft
• Sequencing Center: National Center for Genome Resources
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 36505283
• Sequencing Scaffolds: 2
• Novel Protein Genes: 2
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema → Skeletonema marinoi-dohrnii complex → Skeletonema marinoi	1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → coastal water body → coastal sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.65
  • Long. (^o): -127.4338
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051162	Metagenome / Metatranscriptome	144	Y
F099352	Metatranscriptome	103	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0186658_116422	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema → Skeletonema marinoi-dohrnii complex → Skeletonema marinoi	806
Ga0186658_119968	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	503

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0186658_116422	Ga0186658_1164222	F099352	MVTSPFNGEEAFKGAGAPSLSSEVSVTSNSNRVFLDSQELNAASGPFNLCCSQAYARFTELKRLKLHPGNMTKERDDVESCSANVYKGIQSSCVDQFEAVKACLSNNPDEWAQCASVRRELEVCSVRNNLGELKK
Ga0186658_119968	Ga0186658_1199682	F051162	FPFLLVYFAMPLVKIFARVGMNKAIPLKTLQSQMCKIWSTKPETTKLVLSRVEDWTSESYYEDCYIDIRAYGKTERTREFVLDGMTQIQQAFAEHDLIANVRLETYEGERYFHVPPKK