Sample 3300017236

Basic Information
IMG/M Taxon OID	3300017236 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0128947 \| Gp0211930 \| Ga0186218
Sample Name	Metatranscriptome of marine eukaryotic communities from unknown location in 1/8 Erdschreiber medium with filtered sea water, at 22 C, 35 psu salinity and 247 ?mol photons light - Rosalina sp. (MMETSP0190_2)
Sequencing Status	Permanent Draft
Sequencing Center	National Center for Genome Resources
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0128947 | Gp0211930 | Ga0186218

Sample Name

Metatranscriptome of marine eukaryotic communities from unknown location in 1/8 Erdschreiber medium with filtered sea water, at 22 C, 35 psu salinity and 247 ?mol photons light - Rosalina sp. (MMETSP0190_2)

Sequencing Status

Permanent Draft

Sequencing Center

National Center for Genome Resources

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	35869245
Sequencing Scaffolds	22
Novel Protein Genes	24
Associated Families	16

Dataset Contents

Total Genome Size

35869245

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Retaria → Foraminifera → Monothalamids → Reticulomyxidae → Reticulomyxa → Reticulomyxa filosa	7
Not Available	12
All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Retaria → Foraminifera → Rotaliida → Elphidiidae → Elphidium → Elphidium margaritaceum	2
All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Retaria → Foraminifera	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Retaria → Foraminifera → Monothalamids → Reticulomyxidae → Reticulomyxa → Reticulomyxa filosa

Not Available

All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Retaria → Foraminifera → Rotaliida → Elphidiidae → Elphidium → Elphidium margaritaceum

All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Retaria → Foraminifera

Ecosystem Assignment (GOLD)
Name	The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Ecosystem Assignment (GOLD)

Name

The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Type

Host-Associated

Taxonomy

Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

marine biome → marine water body → sea water

Earth Microbiome Project Ontology (EMPO)

Free-living → Saline → Water (saline)

Location Information
Location
Coordinates	Lat. (^o)	N/A	Long. (^o)	N/A	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

Coordinates

Lat. (^o)

N/A

Long. (^o)

N/A

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F015563	Metagenome / Metatranscriptome	253	Y
F015960	Metatranscriptome	250	N
F054572	Metatranscriptome	139	N
F057102	Metatranscriptome	136	N
F057884	Metagenome / Metatranscriptome	135	N
F058691	Metatranscriptome	134	Y
F059642	Metatranscriptome	133	N
F070864	Metatranscriptome	122	Y
F073071	Metatranscriptome	120	N
F075672	Metatranscriptome	118	N
F086594	Metatranscriptome	110	N
F088210	Metatranscriptome	109	N
F088255	Metatranscriptome	109	Y
F091100	Metagenome / Metatranscriptome	107	Y
F094899	Metatranscriptome	105	N
F096613	Metatranscriptome	104	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0186218_1005916	All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Retaria → Foraminifera → Monothalamids → Reticulomyxidae → Reticulomyxa → Reticulomyxa filosa	1361	Open in IMG/M
Ga0186218_1006533	All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Retaria → Foraminifera → Monothalamids → Reticulomyxidae → Reticulomyxa → Reticulomyxa filosa	1295	Open in IMG/M
Ga0186218_1007378	Not Available	1214	Open in IMG/M
Ga0186218_1007922	Not Available	1170	Open in IMG/M
Ga0186218_1009018	Not Available	1086	Open in IMG/M
Ga0186218_1010938	All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Retaria → Foraminifera → Rotaliida → Elphidiidae → Elphidium → Elphidium margaritaceum	970	Open in IMG/M
Ga0186218_1012299	Not Available	894	Open in IMG/M
Ga0186218_1012788	All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Retaria → Foraminifera → Monothalamids → Reticulomyxidae → Reticulomyxa → Reticulomyxa filosa	870	Open in IMG/M
Ga0186218_1013564	Not Available	834	Open in IMG/M
Ga0186218_1014107	Not Available	811	Open in IMG/M
Ga0186218_1014243	All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Retaria → Foraminifera → Monothalamids → Reticulomyxidae → Reticulomyxa → Reticulomyxa filosa	804	Open in IMG/M
Ga0186218_1014314	All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Retaria → Foraminifera → Monothalamids → Reticulomyxidae → Reticulomyxa → Reticulomyxa filosa	801	Open in IMG/M
Ga0186218_1015132	All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Retaria → Foraminifera → Monothalamids → Reticulomyxidae → Reticulomyxa → Reticulomyxa filosa	768	Open in IMG/M
Ga0186218_1015149	All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Retaria → Foraminifera → Rotaliida → Elphidiidae → Elphidium → Elphidium margaritaceum	767	Open in IMG/M
Ga0186218_1015626	Not Available	748	Open in IMG/M
Ga0186218_1015901	All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Retaria → Foraminifera → Monothalamids → Reticulomyxidae → Reticulomyxa → Reticulomyxa filosa	737	Open in IMG/M
Ga0186218_1015982	Not Available	734	Open in IMG/M
Ga0186218_1016252	Not Available	723	Open in IMG/M
Ga0186218_1016513	Not Available	714	Open in IMG/M
Ga0186218_1018850	All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Retaria → Foraminifera	634	Open in IMG/M
Ga0186218_1019371	Not Available	619	Open in IMG/M
Ga0186218_1021707	Not Available	556	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0186218_1005916	Ga0186218_10059161	F073071	MWQYVQKRHAGGGTVPPSPHPFLAKPDELPPIAPENVGRTGYGEIKGELKNIMGGPVDELNDFPADMGKLERGRWFPWSNRDDYPPMITTSAEQNQRIWNEMAMEQLLDHHPPHEVHASELPDYHYFSSINNELDHKLPADKAVTEVSAQYTRDKTDIPRFFRSGVPKLPLNEQDWYVPRSPDGRFDWKRNIKENGYSASLFDKRGWDRRYMLKLNVVNPPMHTTGLRQFAQMPTFFRTSEQPLPKRFARQFWASQFDKHVIFMGLYFGSLIYISSWGGHWRQLVWDNDPFNYDITFCAENRKKGGFHGII
Ga0186218_1006533	Ga0186218_10065331	F073071	MWQYVQKRHAGGSTMPPNPHPFLQKIDELPPISPENIGRTGYGEIKGELRNIMGGPVEELNDFPADMGKLERGRWFPWSNRDDYPPMITTSAEQNQRIWNEMAMEQLLDHHPPHEVHASELPDYHYFSPINNELDHKLAKENAVTAVSEQYTRDKTDIPRFFRSGVPKLPLNEQDWYIPRLPDGRFDWKRNIKENGYSASLFDKRGWDRRYMLKLNVVNPPMHTTGLRQFAQMPTFFRTSEQPLPKRFARQFWASQFDKHVIFMGLYFGSLIYISSWGGHWRQLVWDNDPFNYDITFCAENRKKGGFHGII
Ga0186218_1007378	Ga0186218_10073781	F015960	MFKSITRLARGAVSSSQCKVNSMMMGPALVLTSMRTATGGTKGAPPISIDDLYGLCFLAEPSIRPPVERQPRPMFDTDIGLNEVVIYLNGGLHSCNDKVSEDFVLHMFEASVIFFPRDATSKPQEFRDILKSEGGTDELPQLWVQGKLVGSGSELKDFDRVWELCSPARRSWPRDGPYQLGFYNRPGVTRSDQVIGPQ
Ga0186218_1007922	Ga0186218_10079221	F015960	MFKSITRLARGAVSSPQCKVNSMMMGPALVLTSMRTATGGTKGAPPISIDDLYGLCFLAEPSIRPPVERQPRPMFDTDIGLNEVVIYLNGGLHSCKDKVSEDFVLHMFESSVIFFPRDASNKPQEFRDILKSEGGTEELPQLWVQGKLVGSGSELKDFDRVWDLCSPARRAWPRDGPYQLGFYNRQGVTRSDQVIGTQ
Ga0186218_1009018	Ga0186218_10090182	F094899	MLSRASSKLTHSHNTASITVITRSFFDYLRVANDVDSGKTIKEIESELTKEDDTKESQSFGWQWLSWFENNAPEKYAEYASVRSQFQRWEQYLGERGIKSSKQIDFADYRNKISDPSFVDELEINYFVEKDTISSISNMDTLNGWSTNSVNSFKKECEDRGDLIVTPLTNEDKQREKENLENAELYDEKMKLMSQEILKDFEQIDAERMMLGQESFYMQLSEHPQYAETVEDIYTAKQAYLDYVMLPIHRDYVKRERLVTMQDESRRKAFLERFELGSKMINGMDCTVPQ
Ga0186218_1010938	Ga0186218_10109381	F075672	MATANPGETATIDPDQAWNVGSNAEYKSISWYSSSDGSFERKVATESPLDSFSGLNYQKIANGPNEYYGFNEAPLFKYEFDEDAYYRNLVPTKTDEEVQAELNEPVEKMEAKLQEFLDKGEEVVWTPTLAAMAQNCPIKPARVIEYEISPYFQLNKNGYRKNWANTAICEYRPLLRLQSNWYNVSGDFLFRFQMMRWNLTSKAKMRYWKMVMTGGFAGLCIDHIYARQYKRKLKWH
Ga0186218_1011817	Ga0186218_10118171	F096613	MVLALKHIVVIAMTLTFLFFGILGTCCQDGACGGETEGWKYVGYFGWGLGLASTCVGIITSQGGSSSDFNKLEAEREEAGKK
Ga0186218_1012299	Ga0186218_10122991	F058691	MFSFPPIVQRFLRGKTWWHVIRYSPGDLGKFLTHKHPLIGIGVVTYGYFYFWSNPLKQAEEDRFSRFRDNWRAEVHYQEALDWESKKNRDDMRSFVEAQTEKYGSLDKAVQAYESRSGKTAPPLVLNDPVYDYTLKRIGVPVKGDEEPHFLWDGTAYLSEKDKPPTFSDGKIRLPESPRLYLE
Ga0186218_1012788	Ga0186218_10127881	F088210	KFFFWFRLLSRLWGRAWFYLFVSILCYAPVGNDSGSIFAPIAGTALIIISLLSFIFSRMAGKKFARMREYIAAGAEGDELEGRFMRKFDELDMGGKPGTIGSAEIVKLAEQASRSLSNSERHAIQTFLDESCNGFVSKEDFMRQFVTQYEEKGFKQRFL
Ga0186218_1013564	Ga0186218_10135642	F059642	MYALRIGSRRFVAASKVYQQAQPNAVAXXXXQVSRLRTSQLIMYAMRMGTRRFMQASKVYQQASPNTVALLSRRNHVYDKRNYVPEIDDYNAFPTARPWDHFTLRANQNRQRRFGQYFLWICTVYCFWAWFRFMVHRQRLNKIEKWDYQAKYWRDGYWVREFPEGLVMKEFSNGKVSLEPGQSERPGLAKRVLNKIFLVGVSY
Ga0186218_1014107	Ga0186218_10141072	F057102	MPVVSHRTDFCLVHRLKWKIIPPPAVIPPKPTRIIRFGTYRQRLERFPRPGIVFPIAMVGAFIISNGVYFLYAKEHRERYRLFYFSNMASDEPDSYFMRAWQQQLPDFPTTKETWDDMSFRRDFEVFRPPPLIPYDVKGINKKKLKNLDLAKEQLKERVIFDWNFLCPH
Ga0186218_1014243	Ga0186218_10142431	F058691	MFSFPPIVQRFLRGKTWWHVIRYSPGDLGKFLTHKHPLIGIGVVTYGYFYFWSNPLKQAEEDRFSRFRDNWRAEVHYQEALDWESKKNRDDMRSFVEAQTEKYGSLDKAVQAYESRSGKTAPPLVLNDPVYDYTLKRIGVPVKGDEEPHFLWDGTAYLSEKDRPPTFSDGKIRLPEAPRLYVE
Ga0186218_1014314	Ga0186218_10143141	F070864	MSYENALKTVDFLLEVLNEADKPAPADDKPATKAAPKTTESDVKEEYFTSVEDDGVTEGKTVQVTKVLKKLEAEWLEAELGLNDDKGMYLGAVGKIVEIEEDDDTVQLRWENYDTCWIPVKACVDAKGAKETLPVFLSHLGRK
Ga0186218_1015132	Ga0186218_10151321	F070864	MSYENALKTVDFLLEVLNEADKPAPADDKTTKAAPTKQAEASDVKEEYFTSVEDDGCEEGKTVKVTMVIDRLEEQWKEAELGANDDKSMYLGAVGKIVEIEEDDDTVQLRWANYDTCWIPIKACVDAKGAKETLPVFLSHLGAK
Ga0186218_1015149	Ga0186218_10151491	F075672	MATANPGETATIDPDQAWNVGSNAEYKSISWYSSSDGSFERKVATESPLDSFSGLNYQKIANGPNEYYGFNEAPLFKYEFDEDAYYRNLVPTKTDEEVQAELNEPVEKMEAKLQEFLDKGEEVVWTPTLAAMAQNCPIKPARVIEYEISPYFQLNKNGYRKNWANTAICEYRPLLRLQSNWYNVSGDFLFRFQMMRWNLTSKMRMRYWKMVMSGGFVGLCIDHVYARQYKRKLKWH
Ga0186218_1015626	Ga0186218_10156261	F086594	PPYTIKTKFDYSKTEPLKNYELAVSDAGDNWEKHNALYQHYQDGEYFVTHSVPDFEKFYGGYYGEYWPSHFGGGYHKFLRRRSDISGTYSHKYPWVNFIRRKCDERGIHWDFPRGQDYQIIMRWLLTLYMIVFIAKQYNNFSTHRKTLKPLEPDADYPLRFNLPFYVYIIHQQSAPNFE
Ga0186218_1015901	Ga0186218_10159011	F054572	MPRPHILLTNTGYPLPGDKLDPRYHPLGQPGPRHRGPVWICKIPLGLRLPAMVVSYCFITWNLRHFMFPHRCRTIQNVELPIFTDTEVKGIWQMRLAKHEDPFRWGHIYAKMQEERIREAKKRGELPDNYPENEEQLNRMDPQTFEAMMPKVEKIRFDVDVDRMDGVCGLRNPLPSDHGHAK
Ga0186218_1015982	Ga0186218_10159821	F088255	PAKDAKNSFYSTKLTGYYAPNKDGSRVCKTKAEFAVGDDQLNLSVGGDITIEDKSKNDSPLQQMEAKVKTYTLGFLYTPTKDSQYSVIYTPDPQSNGMEYSFTCFKKMSDKCSLAAKADGKVDTKLTGFPPVITIAGGWTLGANYLQGFVNSRKEYGFAYKVKVSNSATLNLGLATYLNDEQRANTQFGYKLQV
Ga0186218_1016252	Ga0186218_10162521	F057884	MNRLRMFGVIKVIKDETVTCSTWPKATLMRKVGFIDRATGGFYPTEGIIQSVDQQDLKICLLNDCTEPLRVGDLVVMKSGTDLGTASGDKRMPPWGFSEQSR
Ga0186218_1016513	Ga0186218_10165131	F059642	MYALRIGSRRFVAASKVYQQAQPNAVAXXXXQVSRLRTSQLIMYAMRMGTRRFMQASKVYQQASPNTVALLSRRNHVYDKRNYVPEIDDYNAFPTARPWDHFTLRANQNRQRRFGQYFLWICTVYCFWAWFRFMVHRQRLNKIEKWDYQAKYWRDGYWVREFPEGLVMKEFSNGKVSLEPGQSERPGLAKRVLNKIFAVGVSY
Ga0186218_1016760	Ga0186218_10167601	F096613	MVLALKHIVVIAMTLTFLFFGILGTCCQDGACGGETEGWKYVGYFGWGLGLASTCVGIITSQGGSSSTDLNKLEAEREQARAK
Ga0186218_1018850	Ga0186218_10188501	F015563	FWGKWGIYNPNAAKEYLRQAYNRGYGQPLISGRENGYGTTPFLTYLARRWNYDWLKLIAMRIDAERTPLMVLKRQIWMARFEYWVRRWYARKAINRAAKVEWAYIKERLYQPMTWTGRDAQHASLWLLNVFAFFAIGETCSRQYIYGYPVATPEWTPSKPKFVPGFWHTYDAFENYPFDNQPNYITKQFQRSGWWHNSGETYWAPHRILAG
Ga0186218_1019371	Ga0186218_10193711	F088255	PAKDAKNSFYSSKLVGFYAPNKDGSRICKTKLEFAVGDDQLNLSVGGDITIQDKSKNDQPFQSMDAKVKTYTLGFLYTPTKDSQYSVIYTPDPQSNGMEYSFTCFKQASDKCSLAARAEGKVDTKLTGFPPVVSIAGGWTLGANYLQGFVNSRKEYGLAYKVKVSDSATLNLGLSSYLNDEQRANTTFGYKLQV
Ga0186218_1021707	Ga0186218_10217071	F091100	IGEIWRYATTGLTKGRVDGGSVTCIQAVSTALGECGHPAQSPWMKITDPVCSFAASGPGGIWQVTSQDSNDVLLAGCSDGEDPCCNARLAYAHAYNQGGATVVPSDYCQHQEDCTQIYSNCGGSSGPKWNDVSVDQKKPGAMIPDCDYKTNPWYPNGGSSLAYVTIDQEPCYWGPFSVAAGGVG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300017236: Metatranscriptome of marine eukaryotic communities from unknown location in 1/8 Erdschreiber medium with filtered sea water, at 22 C, 35 psu salinity and 247 ?mol photons light - Rosalina sp. (MMETSP0190_2)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences